RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 V9GYV3 84 aa2.91□□□□□ -1.94
USH2A-202ENST00000366942 GREB1Q4ZG55 1949 aa2.91□□□□□ -1.94
USH2A-202ENST00000366942 IGHV3OR16-9A0A0B4J2B5 98 aa2.91□□□□□ -1.94
USH2A-202ENST00000366942 Q6ZPA2 131 aa2.91□□□□□ -1.94
USH2A-202ENST00000366942 Q8N6K4 173 aa2.91□□□□□ -1.94
USH2A-202ENST00000366942 HIST1H2BLQ99880 126 aa2.91□□□□□ -1.94
USH2A-202ENST00000366942 UBE2V1Q13404 147 aa2.91□□□□□ -1.94
USH2A-202ENST00000366942 LINC01561Q8N1V8 128 aa2.91□□□□□ -1.94
USH2A-202ENST00000366942 Q9BRP9 147 aa2.91□□□□□ -1.94
USH2A-202ENST00000366942 LOC100131303A0A0U1RQF7 123 aa2.9□□□□□ -1.94
USH2A-202ENST00000366942 SMKR1H3BMG3 65 aa2.9□□□□□ -1.94
USH2A-202ENST00000366942 ATOH7Q8N100 152 aa2.9□□□□□ -1.94
USH2A-202ENST00000366942 PYGO1Q9Y3Y4 419 aa2.9□□□□□ -1.94
USH2A-202ENST00000366942 C10orf99Q6UWK7 81 aa2.9□□□□□ -1.94
USH2A-202ENST00000366942 ANKRD17O75179 2603 aaKnown RBP2.9□□□□□ -1.94
USH2A-202ENST00000366942 BAHCC1Q9P281 2608 aa2.9□□□□□ -1.95
USH2A-202ENST00000366942 A0A087WTM6 91 aa2.9□□□□□ -1.95
USH2A-202ENST00000366942 C9orf62Q8N4C0 152 aa2.9□□□□□ -1.95
USH2A-202ENST00000366942 FXYD5Q96DB9 178 aa2.9□□□□□ -1.95
USH2A-202ENST00000366942 SCN8AQ9UQD0 1980 aa2.9□□□□□ -1.95
USH2A-202ENST00000366942 ATOX1O00244 68 aa2.9□□□□□ -1.95
USH2A-202ENST00000366942 COL4A1P02462 1669 aa2.9□□□□□ -1.95
USH2A-202ENST00000366942 A0A1B0GUV1 79 aa2.89□□□□□ -1.95
USH2A-202ENST00000366942 PPDPFLQ8WWR9 84 aa2.89□□□□□ -1.95
USH2A-202ENST00000366942 USP24Q9UPU5 2620 aa2.89□□□□□ -1.95
USH2A-202ENST00000366942 C8orf87E5RJ46 101 aa2.89□□□□□ -1.95
USH2A-202ENST00000366942 WFDC10BQ8IUB3 73 aa2.89□□□□□ -1.95
USH2A-202ENST00000366942 NEXN-AS1Q8NBZ9 246 aa2.89□□□□□ -1.95
USH2A-202ENST00000366942 CLEC2BQ92478 149 aa2.89□□□□□ -1.95
USH2A-202ENST00000366942 IGHV6-1A0A0B4J1U7 121 aa2.89□□□□□ -1.95
USH2A-202ENST00000366942 FOCADQ5VW36 1801 aa2.89□□□□□ -1.95
USH2A-202ENST00000366942 ANK1P16157 1881 aa2.89□□□□□ -1.95
USH2A-202ENST00000366942 CCKP06307 115 aa2.89□□□□□ -1.95
USH2A-202ENST00000366942 COL11A1P12107 1806 aaPredicted RBP2.89□□□□□ -1.95
USH2A-202ENST00000366942 PRB4P10163 310 aaPredicted RBP2.88□□□□□ -1.95
USH2A-202ENST00000366942 HRES1P13985 223 aa2.88□□□□□ -1.95
USH2A-202ENST00000366942 ESRGQ1W209 222 aa2.88□□□□□ -1.95
USH2A-202ENST00000366942 C18orf65Q6ZTR6 163 aa2.88□□□□□ -1.95
USH2A-202ENST00000366942 WDR81Q562E7 1941 aa2.88□□□□□ -1.95
USH2A-202ENST00000366942 SNAI2O43623 268 aa2.88□□□□□ -1.95
USH2A-202ENST00000366942 LINC00575Q6W349 94 aa2.88□□□□□ -1.95
USH2A-202ENST00000366942 WFDC1Q9HC57 220 aa2.88□□□□□ -1.95
USH2A-202ENST00000366942 UTRNP46939 3433 aa2.88□□□□□ -1.95
USH2A-202ENST00000366942 FLG2Q5D862 2391 aaPredicted RBP2.88□□□□□ -1.95
USH2A-202ENST00000366942 TSHBP01222 138 aa2.88□□□□□ -1.95
USH2A-202ENST00000366942 CDSNQ15517 529 aa2.88□□□□□ -1.95
USH2A-202ENST00000366942 LINC00167Q96N53 147 aa2.88□□□□□ -1.95
USH2A-202ENST00000366942 PTPRDP23468 1912 aa2.87□□□□□ -1.95
USH2A-202ENST00000366942 K7EN84 100 aa2.87□□□□□ -1.95
USH2A-202ENST00000366942 SPINK1P00995 79 aa2.87□□□□□ -1.95
USH2A-202ENST00000366942 LINC00313P59037 77 aa2.87□□□□□ -1.95
USH2A-202ENST00000366942 MRPS36P82909 103 aaKnown RBP2.87□□□□□ -1.95
USH2A-202ENST00000366942 NUP210Q8TEM1 1887 aaPredicted RBP2.87□□□□□ -1.95
USH2A-202ENST00000366942 PSME4Q14997 1843 aa2.87□□□□□ -1.95
USH2A-202ENST00000366942 WIPF1O43516 503 aa2.87□□□□□ -1.95
USH2A-202ENST00000366942 BCE1O60756 84 aa2.87□□□□□ -1.95
USH2A-202ENST00000366942 LINC00205P59089 165 aa2.87□□□□□ -1.95
USH2A-202ENST00000366942 MOBPQ13875 183 aa2.87□□□□□ -1.95
USH2A-202ENST00000366942 DOCK4Q8N1I0 1966 aa2.87□□□□□ -1.95
USH2A-202ENST00000366942 CFC1BP0CG36 223 aa2.87□□□□□ -1.95
USH2A-202ENST00000366942 CFC1P0CG37 223 aa2.87□□□□□ -1.95
USH2A-202ENST00000366942 C19orf73Q9NVV2 129 aa2.87□□□□□ -1.95
USH2A-202ENST00000366942 IGKV2D-30A0A075B6S6 120 aa2.87□□□□□ -1.95
USH2A-202ENST00000366942 IGKV2-30P06310 120 aa2.87□□□□□ -1.95
USH2A-202ENST00000366942 DNAH10OSP0CZ25 163 aa2.87□□□□□ -1.95
USH2A-202ENST00000366942 LINC00588Q9Y4M8 146 aa2.87□□□□□ -1.95
USH2A-202ENST00000366942 PTPRFP10586 1907 aa2.87□□□□□ -1.95
USH2A-202ENST00000366942 Q5VSD8 79 aa2.86□□□□□ -1.95
USH2A-202ENST00000366942 SMCR5Q8TEV8 140 aa2.86□□□□□ -1.95
USH2A-202ENST00000366942 PTH2Q96A98 100 aa2.86□□□□□ -1.95
USH2A-202ENST00000366942 C11orf86A6NJI1 115 aa2.86□□□□□ -1.95
USH2A-202ENST00000366942 NPYP01303 97 aa2.86□□□□□ -1.95
USH2A-202ENST00000366942 KRTAP27-1Q3LI81 207 aa2.86□□□□□ -1.95
USH2A-202ENST00000366942 SDIM1Q6ZPB5 146 aa2.86□□□□□ -1.95
USH2A-202ENST00000366942 NLRC5Q86WI3 1866 aa2.86□□□□□ -1.95
USH2A-202ENST00000366942 ZFAND3Q9H8U3 227 aa2.86□□□□□ -1.95
USH2A-202ENST00000366942 TAX1BP3O14907 124 aa2.85□□□□□ -1.95
USH2A-202ENST00000366942 C11orf1Q9H5F2 150 aa2.85□□□□□ -1.95
USH2A-202ENST00000366942 A0A087WYN8 130 aa2.85□□□□□ -1.95
USH2A-202ENST00000366942 TRBV6-5A0A0K0K1A5 114 aa2.85□□□□□ -1.95
USH2A-202ENST00000366942 ATP5EP2Q5VTU8 51 aa2.85□□□□□ -1.95
USH2A-202ENST00000366942 C22orf24Q9Y442 160 aa2.85□□□□□ -1.95
USH2A-202ENST00000366942 RPL39LQ96EH5 51 aaKnown RBP2.85□□□□□ -1.95
USH2A-202ENST00000366942 V9GYY9 64 aa2.85□□□□□ -1.95
USH2A-202ENST00000366942 EML6Q6ZMW3 1958 aa2.85□□□□□ -1.95
USH2A-202ENST00000366942 H3BUT2 72 aa2.85□□□□□ -1.95
USH2A-202ENST00000366942 RNASE3P12724 160 aaKnown RBP2.85□□□□□ -1.95
USH2A-202ENST00000366942 COL5A1P20908 1838 aaPredicted RBP2.85□□□□□ -1.95
USH2A-202ENST00000366942 KLLNB2CW77 178 aa2.85□□□□□ -1.95
USH2A-202ENST00000366942 NDUFC1O43677 76 aa2.85□□□□□ -1.95
USH2A-202ENST00000366942 SRSF3P84103 164 aaKnown RBP2.85□□□□□ -1.95
USH2A-202ENST00000366942 Q8N814 137 aa2.85□□□□□ -1.95
USH2A-202ENST00000366942 PLAC4Q8WY50 150 aa2.85□□□□□ -1.95
USH2A-202ENST00000366942 Q96NJ1 140 aa2.85□□□□□ -1.95
USH2A-202ENST00000366942 DENND4AQ7Z401 1863 aa2.85□□□□□ -1.95
USH2A-202ENST00000366942 ANKRD36A6QL64 1941 aa2.85□□□□□ -1.95
USH2A-202ENST00000366942 IGLC2P0DOY2 106 aa2.84□□□□□ -1.95
USH2A-202ENST00000366942 MYO5AQ9Y4I1 1855 aaKnown RBP2.84□□□□□ -1.95
USH2A-202ENST00000366942 A0A1W2PPR1 153 aa2.84□□□□□ -1.95
USH2A-202ENST00000366942 NCKAP5O14513 1909 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms