RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 SAMD5Q5TGI4 173 aa7.63□□□□□ -1.19
CUX1-221ENST00000622516 SFTA2Q6UW10 78 aa7.63□□□□□ -1.19
CUX1-221ENST00000622516 ANAPC13Q9BS18 74 aa7.63□□□□□ -1.19
CUX1-221ENST00000622516 GAGE7O76087 117 aa7.62□□□□□ -1.19
CUX1-221ENST00000622516 GAGE12FP0CL80 117 aa7.62□□□□□ -1.19
CUX1-221ENST00000622516 GAGE12GP0CL81 117 aa7.62□□□□□ -1.19
CUX1-221ENST00000622516 GAGE12IP0CL82 117 aa7.62□□□□□ -1.19
CUX1-221ENST00000622516 HERVK_113P61574 105 aa7.62□□□□□ -1.19
CUX1-221ENST00000622516 A8MZ25 164 aa7.62□□□□□ -1.19
CUX1-221ENST00000622516 C12orf74Q32Q52 190 aa7.62□□□□□ -1.19
CUX1-221ENST00000622516 TRAV8-3A0A0A6YYJ7 113 aa7.62□□□□□ -1.19
CUX1-221ENST00000622516 LINC01549A6NIU2 74 aa7.62□□□□□ -1.19
CUX1-221ENST00000622516 ZNF22P17026 224 aaPredicted RBP7.62□□□□□ -1.19
CUX1-221ENST00000622516 PAPPA-AS1Q5QFB9 102 aa7.62□□□□□ -1.19
CUX1-221ENST00000622516 J3QQQ9 107 aa7.61□□□□□ -1.19
CUX1-221ENST00000622516 RHODO00212 210 aa7.61□□□□□ -1.19
CUX1-221ENST00000622516 Q6ZUT4 128 aa7.61□□□□□ -1.19
CUX1-221ENST00000622516 C1QTNF4Q9BXJ3 329 aa7.61□□□□□ -1.19
CUX1-221ENST00000622516 GAGE12JA6NER3 117 aa7.61□□□□□ -1.19
CUX1-221ENST00000622516 NDUFA7O95182 113 aa7.61□□□□□ -1.19
CUX1-221ENST00000622516 GAGE4Q13068 117 aa7.61□□□□□ -1.19
CUX1-221ENST00000622516 GAGE13Q4V321 117 aa7.61□□□□□ -1.19
CUX1-221ENST00000622516 SLC25A29Q8N8R3 303 aa7.61□□□□□ -1.19
CUX1-221ENST00000622516 TMEM263Q8WUH6 116 aaKnown RBP7.61□□□□□ -1.19
CUX1-221ENST00000622516 UBE2D4Q9Y2X8 147 aa7.61□□□□□ -1.19
CUX1-221ENST00000622516 TRGV2A0A075B6R0 118 aa7.6□□□□□ -1.19
CUX1-221ENST00000622516 A0A0J9YY99 117 aa7.6□□□□□ -1.19
CUX1-221ENST00000622516 LOC100131303A0A0U1RQF7 123 aa7.6□□□□□ -1.19
CUX1-221ENST00000622516 TMEM223A0PJW6 202 aa7.6□□□□□ -1.19
CUX1-221ENST00000622516 LINC00694P0DN24 101 aa7.6□□□□□ -1.19
CUX1-221ENST00000622516 LGALS3P17931 250 aaKnown RBP7.6□□□□□ -1.19
CUX1-221ENST00000622516 NFE4Q86UQ8 179 aa7.6□□□□□ -1.19
CUX1-221ENST00000622516 EDA2RQ9HAV5 297 aa7.6□□□□□ -1.19
CUX1-221ENST00000622516 SPANXB1Q9NS25 103 aaPredicted RBP7.6□□□□□ -1.19
CUX1-221ENST00000622516 PLAC8L1A1L4L8 177 aa7.59□□□□□ -1.19
CUX1-221ENST00000622516 APOMO95445 188 aa7.59□□□□□ -1.19
CUX1-221ENST00000622516 IL17DQ8TAD2 202 aa7.59□□□□□ -1.19
CUX1-221ENST00000622516 IGLL5B9A064 214 aa7.59□□□□□ -1.19
CUX1-221ENST00000622516 PIK3CD-AS1Q5SR53 167 aa7.59□□□□□ -1.19
CUX1-221ENST00000622516 AMELXQ99217 191 aa7.59□□□□□ -1.19
CUX1-221ENST00000622516 SMIM9A6NGZ8 99 aa7.59□□□□□ -1.2
CUX1-221ENST00000622516 CSNK1G2-AS1Q8NCQ2 148 aa7.59□□□□□ -1.2
CUX1-221ENST00000622516 SPINK8P0C7L1 97 aa7.58□□□□□ -1.2
CUX1-221ENST00000622516 WFDC2Q14508 124 aa7.58□□□□□ -1.2
CUX1-221ENST00000622516 TAL2Q16559 108 aa7.58□□□□□ -1.2
CUX1-221ENST00000622516 DGAT2L7PQ6IED9 249 aa7.58□□□□□ -1.2
CUX1-221ENST00000622516 LINC00482Q8N8I6 264 aa7.58□□□□□ -1.2
CUX1-221ENST00000622516 F8W1H4 67 aa7.58□□□□□ -1.2
CUX1-221ENST00000622516 RRN3P1Q2M238 152 aa7.58□□□□□ -1.2
CUX1-221ENST00000622516 NTM-AS1Q6ZSK4 140 aa7.58□□□□□ -1.2
CUX1-221ENST00000622516 PYGO1Q9Y3Y4 419 aa7.58□□□□□ -1.2
CUX1-221ENST00000622516 STAB1Q9NY15 2570 aa7.57□□□□□ -1.2
CUX1-221ENST00000622516 K7EQD1 137 aa7.57□□□□□ -1.2
CUX1-221ENST00000622516 PKD1L1Q8TDX9 2849 aa7.57□□□□□ -1.2
CUX1-221ENST00000622516 IGHV3-30-3P0DP02 117 aa7.57□□□□□ -1.2
CUX1-221ENST00000622516 DEFB130BP0DP73 79 aa7.57□□□□□ -1.2
CUX1-221ENST00000622516 DEFB130AP0DP74 79 aa7.57□□□□□ -1.2
CUX1-221ENST00000622516 SH2D6Q7Z4S9 175 aa7.57□□□□□ -1.2
CUX1-221ENST00000622516 ETDBQ3ZM63 59 aa7.56□□□□□ -1.2
CUX1-221ENST00000622516 NDUFA11Q86Y39 141 aa7.56□□□□□ -1.2
CUX1-221ENST00000622516 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.56□□□□□ -1.2
CUX1-221ENST00000622516 DNAJC30Q96LL9 226 aa7.56□□□□□ -1.2
CUX1-221ENST00000622516 MRPS36P82909 103 aaKnown RBP7.56□□□□□ -1.2
CUX1-221ENST00000622516 RPL36AP83881 106 aaKnown RBP7.56□□□□□ -1.2
CUX1-221ENST00000622516 C10orf126Q8N4M7 172 aa7.56□□□□□ -1.2
CUX1-221ENST00000622516 RPL36ALQ969Q0 106 aaKnown RBP7.56□□□□□ -1.2
CUX1-221ENST00000622516 TIMM21Q9BVV7 248 aa7.56□□□□□ -1.2
CUX1-221ENST00000622516 TRAV4A0A0B4J268 109 aa7.56□□□□□ -1.2
CUX1-221ENST00000622516 H3BMG7 143 aa7.56□□□□□ -1.2
CUX1-221ENST00000622516 LEPROTO15243 131 aa7.56□□□□□ -1.2
CUX1-221ENST00000622516 C16orf74Q96GX8 76 aa7.56□□□□□ -1.2
CUX1-221ENST00000622516 TRAV13-1A0A0B4J241 112 aa7.55□□□□□ -1.2
CUX1-221ENST00000622516 DEFB4AO15263 64 aa7.55□□□□□ -1.2
CUX1-221ENST00000622516 CRLF1O75462 422 aa7.55□□□□□ -1.2
CUX1-221ENST00000622516 NPC2P61916 151 aa7.55□□□□□ -1.2
CUX1-221ENST00000622516 COX6A2Q02221 97 aa7.55□□□□□ -1.2
CUX1-221ENST00000622516 CDKN2A-AS1Q9UH64 79 aa7.55□□□□□ -1.2
CUX1-221ENST00000622516 TRGV4A0A0C4DH28 118 aa7.55□□□□□ -1.2
CUX1-221ENST00000622516 IGHV3-30P01768 117 aa7.55□□□□□ -1.2
CUX1-221ENST00000622516 IGHV3-30-5P0DP03 117 aa7.55□□□□□ -1.2
CUX1-221ENST00000622516 CMC4P56277 68 aaPredicted RBP7.55□□□□□ -1.2
CUX1-221ENST00000622516 DAZ2Q13117 558 aaKnown RBP7.55□□□□□ -1.2
CUX1-221ENST00000622516 SPANXA1Q9NS26 97 aa7.55□□□□□ -1.2
CUX1-221ENST00000622516 IGKV3OR2-268A0A0C4DH90 116 aa7.54□□□□□ -1.2
CUX1-221ENST00000622516 UBE2D3P61077 147 aa7.53□□□□□ -1.2
CUX1-221ENST00000622516 UBE2D2P62837 147 aa7.53□□□□□ -1.2
CUX1-221ENST00000622516 LOC107984156A0A0G2JMH3 177 aa7.53□□□□□ -1.2
CUX1-221ENST00000622516 H7C2G1 150 aa7.53□□□□□ -1.2
CUX1-221ENST00000622516 PRSS2P07478 247 aa7.53□□□□□ -1.2
CUX1-221ENST00000622516 INSL3P51460 131 aa7.53□□□□□ -1.2
CUX1-221ENST00000622516 UBE2D1P51668 147 aa7.53□□□□□ -1.2
CUX1-221ENST00000622516 ARL17AQ8IVW1 177 aa7.53□□□□□ -1.2
CUX1-221ENST00000622516 ANK2Q01484 3957 aa7.53□□□□□ -1.2
CUX1-221ENST00000622516 MAST4O15021 2626 aa7.53□□□□□ -1.2
CUX1-221ENST00000622516 A0A0J9YXY3 114 aa7.53□□□□□ -1.2
CUX1-221ENST00000622516 NHLRC4P0CG21 123 aaPredicted RBP7.53□□□□□ -1.2
CUX1-221ENST00000622516 CFC1BP0CG36 223 aa7.53□□□□□ -1.2
CUX1-221ENST00000622516 CFC1P0CG37 223 aa7.53□□□□□ -1.2
CUX1-221ENST00000622516 MUSTN1Q8IVN3 82 aa7.53□□□□□ -1.2
CUX1-221ENST00000622516 TINCRA0A1B0GVN0 87 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms