RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 RAB5BP61020 215 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 RANP62826 216 aaKnown RBP1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 CCL20P78556 96 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 FAM19A1Q7Z5A9 133 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 RPP21Q9H633 154 aaKnown RBP1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 OSTCQ9NRP0 149 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 TMEM242Q9NWH2 141 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 KLK12Q9UKR0 248 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 IGHV3-72A0A0B4J1Y9 119 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 TRAV3A0A0B4J244 114 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 IGHV3-64DA0A0J9YX35 117 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 A0A1B0GV72 72 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 SIX6O95475 246 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 TLX1NBP0CAT3 122 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 SMIM17P0DL12 118 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 BCL2P10415 239 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 HERVK_113P63121 156 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 AMTNQ6UX39 209 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 DEFB125Q8N687 156 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 OR2T35Q8NGX2 323 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 COPS9Q8WXC6 57 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 LEAP2Q969E1 77 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 CHAC1Q9BUX1 264 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 ZNF471Q9BX82 626 aaPredicted RBP1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 IL36BQ9NZH7 164 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 EPDR1Q9UM22 224 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 PRR14LQ5THK1 2151 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 IGKV1D-37A0A075B6S9 117 aa1.28□□□□□ -2.21
SMCHD1-211ENST00000584897 A0A096LNJ9 63 aa1.28□□□□□ -2.21
SMCHD1-211ENST00000584897 GRIFINA4D1Z8 144 aa1.28□□□□□ -2.21
SMCHD1-211ENST00000584897 KNCNA6PVL3 124 aa1.28□□□□□ -2.21
SMCHD1-211ENST00000584897 G3V318 75 aa1.28□□□□□ -2.21
SMCHD1-211ENST00000584897 S100PP25815 95 aa1.28□□□□□ -2.21
SMCHD1-211ENST00000584897 FOXA3P55318 350 aaPredicted RBP1.28□□□□□ -2.21
SMCHD1-211ENST00000584897 FLI1Q01543 452 aaPredicted RBP1.28□□□□□ -2.21
SMCHD1-211ENST00000584897 INSL4Q14641 139 aa1.28□□□□□ -2.21
SMCHD1-211ENST00000584897 RNASE13Q5GAN3 156 aaKnown RBP1.28□□□□□ -2.21
SMCHD1-211ENST00000584897 LHFPL5Q8TAF8 219 aa1.28□□□□□ -2.21
SMCHD1-211ENST00000584897 AP1S3Q96PC3 154 aa1.28□□□□□ -2.21
SMCHD1-211ENST00000584897 MGST2Q99735 147 aa1.28□□□□□ -2.21
SMCHD1-211ENST00000584897 TIMM21Q9BVV7 248 aa1.28□□□□□ -2.21
SMCHD1-211ENST00000584897 PRO0255Q9UI72 69 aa1.28□□□□□ -2.21
SMCHD1-211ENST00000584897 MRPS16Q9Y3D3 137 aaKnown RBP1.28□□□□□ -2.21
SMCHD1-211ENST00000584897 USF3Q68DE3 2245 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 UBE2L5PA0A1B0GUS4 154 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 MAP1LC3B2A6NCE7 125 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 SLC25A20O43772 301 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 SPINK4O60575 86 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 NDUFC2O95298 119 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 OXTP01178 125 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 PRH1P02810 166 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 S100A4P26447 101 aaKnown RBP1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 LYRM7Q5U5X0 104 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 MIEN1Q9BRT3 115 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 MAP1LC3BQ9GZQ8 125 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 STARD9Q9P2P6 4700 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 A0A1B0GVX0 72 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 A0A1B0GXF2 115 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 IGLL5B9A064 214 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 TSTD3H0UI37 97 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 MT-ND4LP03901 98 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 TCRAP04437 139 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 GPX1P07203 203 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 GIG44P09565 113 aaPredicted RBP1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 IAPPP10997 89 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 RHEBQ15382 184 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 MAFIPQ8WZ33 124 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 C20orf78Q9BR46 151 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 CNFNQ9BYD5 112 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 NAT8Q9UHE5 227 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 PAIP2BQ9ULR5 123 aaKnown RBP1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 DIDO1Q9BTC0 2240 aaKnown RBP1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 IGHV3-21A0A0B4J1V1 117 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 TRBV6-5A0A0K0K1A5 114 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 FAM24AA6NFZ4 105 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 K7EIL1 84 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 SH2D1AO60880 128 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 HINT1P49773 126 aaPredicted RBP1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 DEFB131AP59861 70 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 PMAIP1Q13794 54 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 DIAPH2-AS1Q14236 149 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 CLLU1Q5K131 121 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 SLC25A34Q6PIV7 304 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 SCXQ7RTU7 201 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 MIR7-3HGQ8N6C7 128 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 UBALD1Q8TB05 177 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 CYTL1Q9NRR1 136 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 LINC00474Q9P2X8 69 aa1.27□□□□□ -2.21
SMCHD1-211ENST00000584897 FXYD6-FXYD2A0A087WZ82 144 aa1.26□□□□□ -2.21
SMCHD1-211ENST00000584897 KRTAP9-6A8MVA2 160 aa1.26□□□□□ -2.21
SMCHD1-211ENST00000584897 H3BSH0 61 aa1.26□□□□□ -2.21
SMCHD1-211ENST00000584897 LTAP01374 205 aa1.26□□□□□ -2.21
SMCHD1-211ENST00000584897 GNG4P50150 75 aa1.26□□□□□ -2.21
SMCHD1-211ENST00000584897 KRTAP10-3P60369 221 aa1.26□□□□□ -2.21
SMCHD1-211ENST00000584897 MEF2BQ02080 365 aaPredicted RBP1.26□□□□□ -2.21
SMCHD1-211ENST00000584897 LINC00483Q53H64 154 aa1.26□□□□□ -2.21
SMCHD1-211ENST00000584897 RPL7L1Q6DKI1 246 aaKnown RBP1.26□□□□□ -2.21
SMCHD1-211ENST00000584897 FAM19A3Q7Z5A8 133 aa1.26□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 133.5 ms