RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	SMAGP	Q0VAQ4	97 aa		5.94	□□□□□ -1.46
USP4-213	ENST00000488520	CHCHD5	Q9BSY4	110 aa		5.94	□□□□□ -1.46
USP4-213	ENST00000488520	MAP1LC3A	Q9H492	121 aa		5.94	□□□□□ -1.46
USP4-213	ENST00000488520		Q9UF83	564 aa		5.94	□□□□□ -1.46
USP4-213	ENST00000488520	SRRM2	Q9UQ35	2752 aa	Known RBP	5.93	□□□□□ -1.46
USP4-213	ENST00000488520	TRBV6-8	A0A0A6YYG3	113 aa		5.93	□□□□□ -1.46
USP4-213	ENST00000488520	LOC389332	A0A1B0GUA5	103 aa		5.93	□□□□□ -1.46
USP4-213	ENST00000488520	RPS10	P46783	165 aa	Known RBP	5.93	□□□□□ -1.46
USP4-213	ENST00000488520	AMT	P48728	403 aa		5.93	□□□□□ -1.46
USP4-213	ENST00000488520	KIAA1644	Q3SXP7	199 aa		5.93	□□□□□ -1.46
USP4-213	ENST00000488520	TTC32	Q5I0X7	151 aa		5.93	□□□□□ -1.46
USP4-213	ENST00000488520	CBLN2	Q8IUK8	224 aa		5.93	□□□□□ -1.46
USP4-213	ENST00000488520	PRSS3P2	Q8NHM4	247 aa		5.93	□□□□□ -1.46
USP4-213	ENST00000488520	TMEM18	Q96B42	140 aa		5.93	□□□□□ -1.46
USP4-213	ENST00000488520	FAT1	Q14517	4588 aa		5.93	□□□□□ -1.46
USP4-213	ENST00000488520	ATP6V1G1	O75348	118 aa		5.92	□□□□□ -1.46
USP4-213	ENST00000488520	BTF3	P20290	206 aa	Known RBP	5.92	□□□□□ -1.46
USP4-213	ENST00000488520	G0S2	P27469	103 aa		5.92	□□□□□ -1.46
USP4-213	ENST00000488520		Q5VSD8	79 aa		5.92	□□□□□ -1.46
USP4-213	ENST00000488520	AMMECR1L	Q6DCA0	310 aa		5.92	□□□□□ -1.46
USP4-213	ENST00000488520	UPK3B	Q9BT76	320 aa		5.92	□□□□□ -1.46
USP4-213	ENST00000488520	TMEM243	Q9BU79	118 aa		5.92	□□□□□ -1.46
USP4-213	ENST00000488520	TMEM70	Q9BUB7	260 aa		5.92	□□□□□ -1.46
USP4-213	ENST00000488520	VPS13B	Q7Z7G8	4022 aa		5.92	□□□□□ -1.46
USP4-213	ENST00000488520		K7EP13	123 aa		5.91	□□□□□ -1.46
USP4-213	ENST00000488520	GAS8-AS1	O95177	125 aa		5.91	□□□□□ -1.46
USP4-213	ENST00000488520	SMR3B	P02814	79 aa	Predicted RBP	5.91	□□□□□ -1.46
USP4-213	ENST00000488520	LINC00694	P0DN24	101 aa		5.91	□□□□□ -1.46
USP4-213	ENST00000488520	POLR2K	P53803	58 aa	Known RBP	5.91	□□□□□ -1.46
USP4-213	ENST00000488520	XG	P55808	180 aa		5.91	□□□□□ -1.46
USP4-213	ENST00000488520	DGAT2L7P	Q6IED9	249 aa		5.91	□□□□□ -1.46
USP4-213	ENST00000488520	C10orf126	Q8N4M7	172 aa		5.91	□□□□□ -1.46
USP4-213	ENST00000488520	NRAC	Q8N912	160 aa		5.91	□□□□□ -1.46
USP4-213	ENST00000488520	DEFB104A	Q8WTQ1	72 aa		5.91	□□□□□ -1.46
USP4-213	ENST00000488520	TMEM101	Q96IK0	257 aa		5.91	□□□□□ -1.46
USP4-213	ENST00000488520	MYCBP2	O75592	4640 aa		5.9	□□□□□ -1.46
USP4-213	ENST00000488520	TRBV27	A0A0K0K1C4	114 aa		5.9	□□□□□ -1.46
USP4-213	ENST00000488520		H7C423	109 aa		5.9	□□□□□ -1.46
USP4-213	ENST00000488520	SCO1	O75880	301 aa		5.9	□□□□□ -1.46
USP4-213	ENST00000488520	NPY	P01303	97 aa		5.9	□□□□□ -1.46
USP4-213	ENST00000488520	IGHV3-30	P01768	117 aa		5.9	□□□□□ -1.46
USP4-213	ENST00000488520	IGHV3-33	P01772	117 aa		5.9	□□□□□ -1.46
USP4-213	ENST00000488520	IGHV3-30-3	P0DP02	117 aa		5.9	□□□□□ -1.46
USP4-213	ENST00000488520	IGHV3-30-5	P0DP03	117 aa		5.9	□□□□□ -1.46
USP4-213	ENST00000488520	RAB5B	P61020	215 aa		5.9	□□□□□ -1.46
USP4-213	ENST00000488520	RPL32	P62910	135 aa	Known RBP	5.9	□□□□□ -1.46
USP4-213	ENST00000488520	GAGE6	Q13070	117 aa		5.9	□□□□□ -1.46
USP4-213	ENST00000488520	NXT2	Q9NPJ8	142 aa	Known RBP	5.9	□□□□□ -1.46
USP4-213	ENST00000488520	FAM30A	Q9NZY2	134 aa		5.9	□□□□□ -1.46
USP4-213	ENST00000488520	PRSS47	A8MTI9	375 aa		5.89	□□□□□ -1.47
USP4-213	ENST00000488520	IQCJ	Q1A5X6	159 aa		5.89	□□□□□ -1.47
USP4-213	ENST00000488520	ORMDL2	Q53FV1	153 aa		5.89	□□□□□ -1.47
USP4-213	ENST00000488520	RNASEK	Q6P5S7	137 aa	Known RBP	5.89	□□□□□ -1.47
USP4-213	ENST00000488520	FA2H	Q7L5A8	372 aa		5.89	□□□□□ -1.47
USP4-213	ENST00000488520	WFDC10B	Q8IUB3	73 aa		5.89	□□□□□ -1.47
USP4-213	ENST00000488520		Q8N8P6	123 aa		5.89	□□□□□ -1.47
USP4-213	ENST00000488520	ALKBH7	Q9BT30	221 aa	Predicted RBP	5.89	□□□□□ -1.47
USP4-213	ENST00000488520	CHCHD7	Q9BUK0	85 aa		5.89	□□□□□ -1.47
USP4-213	ENST00000488520	SMIM2	Q9BVW6	85 aa		5.89	□□□□□ -1.47
USP4-213	ENST00000488520	COLCA2	A8K830	154 aa		5.88	□□□□□ -1.47
USP4-213	ENST00000488520		K7EMI3	77 aa		5.88	□□□□□ -1.47
USP4-213	ENST00000488520	ANG	P03950	147 aa	Known RBP	5.88	□□□□□ -1.47
USP4-213	ENST00000488520	DNAH10OS	P0CZ25	163 aa		5.88	□□□□□ -1.47
USP4-213	ENST00000488520	GCSH	P23434	173 aa		5.88	□□□□□ -1.47
USP4-213	ENST00000488520	KRTAP10-1	P60331	282 aa		5.88	□□□□□ -1.47
USP4-213	ENST00000488520	HAMP	P81172	84 aa		5.88	□□□□□ -1.47
USP4-213	ENST00000488520	LAGE3	Q14657	143 aa		5.88	□□□□□ -1.47
USP4-213	ENST00000488520	LINC01556	Q5JQF7	62 aa		5.88	□□□□□ -1.47
USP4-213	ENST00000488520		Q6ZRN7	208 aa	Predicted RBP	5.88	□□□□□ -1.47
USP4-213	ENST00000488520	NTM-AS1	Q6ZSK4	140 aa		5.88	□□□□□ -1.47
USP4-213	ENST00000488520	NIT1	Q86X76	327 aa		5.88	□□□□□ -1.47
USP4-213	ENST00000488520	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	5.87	□□□□□ -1.47
USP4-213	ENST00000488520	IGKV2-29	A2NJV5	120 aa	Predicted RBP	5.87	□□□□□ -1.47
USP4-213	ENST00000488520	TSHB	P01222	138 aa		5.87	□□□□□ -1.47
USP4-213	ENST00000488520	CRP	P02741	224 aa		5.87	□□□□□ -1.47
USP4-213	ENST00000488520	TRGC2	P03986	189 aa		5.87	□□□□□ -1.47
USP4-213	ENST00000488520	IFI27	P40305	119 aa	Predicted RBP	5.87	□□□□□ -1.47
USP4-213	ENST00000488520	NFE4	Q86UQ8	179 aa		5.87	□□□□□ -1.47
USP4-213	ENST00000488520	BAGE3	Q86Y29	109 aa		5.87	□□□□□ -1.47
USP4-213	ENST00000488520	RMI2	Q96E14	147 aa		5.87	□□□□□ -1.47
USP4-213	ENST00000488520	YPEL4	Q96NS1	127 aa		5.87	□□□□□ -1.47
USP4-213	ENST00000488520	TRAV8-3	A0A0A6YYJ7	113 aa		5.86	□□□□□ -1.47
USP4-213	ENST00000488520		A0A1B0GUV1	79 aa		5.86	□□□□□ -1.47
USP4-213	ENST00000488520	LINC01549	A6NIU2	74 aa		5.86	□□□□□ -1.47
USP4-213	ENST00000488520	LINC00614	P0C842	121 aa		5.86	□□□□□ -1.47
USP4-213	ENST00000488520	ZNF25	P17030	456 aa	Predicted RBP	5.86	□□□□□ -1.47
USP4-213	ENST00000488520		Q0VG73	95 aa		5.86	□□□□□ -1.47
USP4-213	ENST00000488520	OR5A1	Q8NGJ0	315 aa		5.86	□□□□□ -1.47
USP4-213	ENST00000488520	KLK12	Q9UKR0	248 aa		5.86	□□□□□ -1.47
USP4-213	ENST00000488520	IBA57-AS1	B1ANH7	110 aa		5.85	□□□□□ -1.47
USP4-213	ENST00000488520	PSCA	O43653	123 aa		5.85	□□□□□ -1.47
USP4-213	ENST00000488520	FGF6	P10767	208 aa		5.85	□□□□□ -1.47
USP4-213	ENST00000488520	ESD	P10768	282 aa		5.85	□□□□□ -1.47
USP4-213	ENST00000488520	RBX1	P62877	108 aa		5.85	□□□□□ -1.47
USP4-213	ENST00000488520	UBE2W	Q96B02	151 aa		5.85	□□□□□ -1.47
USP4-213	ENST00000488520	TM2D2	Q9BX73	214 aa		5.85	□□□□□ -1.47
USP4-213	ENST00000488520	CYSLTR1	Q9Y271	337 aa		5.85	□□□□□ -1.47
USP4-213	ENST00000488520	COX11	Q9Y6N1	276 aa		5.85	□□□□□ -1.47
USP4-213	ENST00000488520		A0A087WTM6	91 aa		5.84	□□□□□ -1.47
USP4-213	ENST00000488520	MPV17L2	Q567V2	206 aa		5.84	□□□□□ -1.47

Retrieved 100 of 20,778 RNA–protein pairs in 153.8 ms