RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 TGFBRAP1Q8WUH2 860 aa18.11■□□□□ 0.49
SS18-215ENST00000580642 STAG1Q8WVM7 1258 aa18.11■□□□□ 0.49
SS18-215ENST00000580642 KRT23Q9C075 422 aa18.11■□□□□ 0.49
SS18-215ENST00000580642 ZNF287Q9HBT7 754 aa18.11■□□□□ 0.49
SS18-215ENST00000580642 DICER1Q9UPY3 1922 aaKnown RBP18.1■□□□□ 0.49
SS18-215ENST00000580642 FLT1P17948 1338 aa18.1■□□□□ 0.49
SS18-215ENST00000580642 USP17L12C9JPN9 530 aa18.1■□□□□ 0.49
SS18-215ENST00000580642 USP17L21D6R901 530 aa18.1■□□□□ 0.49
SS18-215ENST00000580642 MYO1BO43795 1136 aa18.1■□□□□ 0.49
SS18-215ENST00000580642 ENTPD3O75355 529 aa18.1■□□□□ 0.49
SS18-215ENST00000580642 WDHD1O75717 1129 aaPredicted RBP18.1■□□□□ 0.49
SS18-215ENST00000580642 CASTP20810 708 aaKnown RBP18.1■□□□□ 0.49
SS18-215ENST00000580642 AKNAD1Q5T1N1 836 aa18.1■□□□□ 0.49
SS18-215ENST00000580642 C12orf60Q5U649 245 aa18.1■□□□□ 0.49
SS18-215ENST00000580642 DHX32Q7L7V1 743 aaKnown RBP18.1■□□□□ 0.49
SS18-215ENST00000580642 ZBED3Q96IU2 234 aaPredicted RBP18.1■□□□□ 0.49
SS18-215ENST00000580642 DHX36Q9H2U1 1008 aaKnown RBP18.1■□□□□ 0.49
SS18-215ENST00000580642 MCM9Q9NXL9 1143 aa18.1■□□□□ 0.49
SS18-215ENST00000580642 TMOD2Q9NZR1 351 aa18.1■□□□□ 0.49
SS18-215ENST00000580642 RNF181Q9P0P0 153 aa18.1■□□□□ 0.49
SS18-215ENST00000580642 ZBTB12Q9Y330 459 aaPredicted RBP18.1■□□□□ 0.49
SS18-215ENST00000580642 COL2A1P02458 1487 aaPredicted RBP18.09■□□□□ 0.49
SS18-215ENST00000580642 ROBO3Q96MS0 1386 aa18.09■□□□□ 0.49
SS18-215ENST00000580642 RPS6KB1P23443 525 aa18.09■□□□□ 0.49
SS18-215ENST00000580642 ADCK5Q3MIX3 580 aa18.09■□□□□ 0.49
SS18-215ENST00000580642 MFSD6Q6ZSS7 791 aa18.09■□□□□ 0.49
SS18-215ENST00000580642 RALYLQ86SE5 291 aaKnown RBP18.09■□□□□ 0.49
SS18-215ENST00000580642 TTC6Q86TZ1 520 aa18.09■□□□□ 0.49
SS18-215ENST00000580642 IPO9Q96P70 1041 aaKnown RBP18.09■□□□□ 0.49
SS18-215ENST00000580642 ORC4O43929 436 aa18.08■□□□□ 0.48
SS18-215ENST00000580642 MCM5P33992 734 aa18.08■□□□□ 0.48
SS18-215ENST00000580642 GMPSP49915 693 aaPredicted RBP18.08■□□□□ 0.48
SS18-215ENST00000580642 C9orf131Q5VYM1 1079 aa18.08■□□□□ 0.48
SS18-215ENST00000580642 HSCBQ8IWL3 235 aa18.08■□□□□ 0.48
SS18-215ENST00000580642 PRMT6Q96LA8 375 aaPredicted RBP18.08■□□□□ 0.48
SS18-215ENST00000580642 TTC14Q96N46 770 aa18.08■□□□□ 0.48
SS18-215ENST00000580642 MYOZ2Q9NPC6 264 aa18.08■□□□□ 0.48
SS18-215ENST00000580642 TIAM2Q8IVF5 1701 aa18.07■□□□□ 0.48
SS18-215ENST00000580642 ZNF541Q9H0D2 1346 aa18.07■□□□□ 0.48
SS18-215ENST00000580642 MINDY4BA8MYZ0 360 aa18.07■□□□□ 0.48
SS18-215ENST00000580642 H7C1D1 291 aa18.07■□□□□ 0.48
SS18-215ENST00000580642 POLR3DP05423 398 aaPredicted RBP18.07■□□□□ 0.48
SS18-215ENST00000580642 HAND2P61296 217 aa18.07■□□□□ 0.48
SS18-215ENST00000580642 PDE4BQ07343 736 aa18.07■□□□□ 0.48
SS18-215ENST00000580642 SPDYE2Q495Y8 402 aa18.07■□□□□ 0.48
SS18-215ENST00000580642 DPY19L2Q6NUT2 758 aa18.07■□□□□ 0.48
SS18-215ENST00000580642 STOX1Q6ZVD7 989 aa18.07■□□□□ 0.48
SS18-215ENST00000580642 MAPKAPK5Q8IW41 473 aa18.07■□□□□ 0.48
SS18-215ENST00000580642 NBPF3Q9H094 633 aa18.07■□□□□ 0.48
SS18-215ENST00000580642 OSBPL5Q9H0X9 879 aaPredicted RBP18.07■□□□□ 0.48
SS18-215ENST00000580642 PDRG1Q9NUG6 133 aa18.07■□□□□ 0.48
SS18-215ENST00000580642 CNOT7Q9UIV1 285 aaKnown RBP18.07■□□□□ 0.48
SS18-215ENST00000580642 GJA3Q9Y6H8 435 aa18.07■□□□□ 0.48
SS18-215ENST00000580642 LAMA4Q16363 1823 aa18.07■□□□□ 0.48
SS18-215ENST00000580642 SBF1O95248 1867 aa18.06■□□□□ 0.48
SS18-215ENST00000580642 EXOSC10Q01780 885 aaKnown RBP18.06■□□□□ 0.48
SS18-215ENST00000580642 FAM83AQ86UY5 434 aa18.06■□□□□ 0.48
SS18-215ENST00000580642 TBC1D10CQ8IV04 446 aa18.06■□□□□ 0.48
SS18-215ENST00000580642 MB21D2Q8IYB1 491 aaPredicted RBP18.06■□□□□ 0.48
SS18-215ENST00000580642 AGXT2Q9BYV1 514 aa18.06■□□□□ 0.48
SS18-215ENST00000580642 UPF3BQ9BZI7 483 aaKnown RBP18.06■□□□□ 0.48
SS18-215ENST00000580642 EHD4Q9H223 541 aa18.06■□□□□ 0.48
SS18-215ENST00000580642 GPRC5DQ9NZD1 345 aa18.06■□□□□ 0.48
SS18-215ENST00000580642 DAXXQ9UER7 740 aaPredicted RBP18.06■□□□□ 0.48
SS18-215ENST00000580642 TAF6LQ9Y6J9 622 aa18.06■□□□□ 0.48
SS18-215ENST00000580642 ATRNL1Q5VV63 1379 aa18.05■□□□□ 0.48
SS18-215ENST00000580642 HLA-DOAP06340 250 aa18.05■□□□□ 0.48
SS18-215ENST00000580642 MICALL2Q8IY33 904 aa18.05■□□□□ 0.48
SS18-215ENST00000580642 ESR2Q92731 530 aa18.05■□□□□ 0.48
SS18-215ENST00000580642 CHMP4CQ96CF2 233 aa18.05■□□□□ 0.48
SS18-215ENST00000580642 TMEM87BQ96K49 555 aa18.05■□□□□ 0.48
SS18-215ENST00000580642 ZSCAN31Q96LW9 406 aaPredicted RBP18.05■□□□□ 0.48
SS18-215ENST00000580642 TBC1D2Q9BYX2 928 aa18.05■□□□□ 0.48
SS18-215ENST00000580642 SWAP70Q9UH65 585 aa18.05■□□□□ 0.48
SS18-215ENST00000580642 K7ELQ4 463 aaPredicted RBP18.04■□□□□ 0.48
SS18-215ENST00000580642 WNT10BO00744 389 aa18.04■□□□□ 0.48
SS18-215ENST00000580642 TNFAIP1Q13829 316 aa18.04■□□□□ 0.48
SS18-215ENST00000580642 FAM151AQ8WW52 585 aa18.04■□□□□ 0.48
SS18-215ENST00000580642 L3MBTL3Q96JM7 780 aaPredicted RBP18.04■□□□□ 0.48
SS18-215ENST00000580642 TDRD3Q9H7E2 651 aaKnown RBP18.04■□□□□ 0.48
SS18-215ENST00000580642 ZNF70Q9UC06 446 aaPredicted RBP18.04■□□□□ 0.48
SS18-215ENST00000580642 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.04■□□□□ 0.48
SS18-215ENST00000580642 DCAF8L1A6NGE4 600 aa18.03■□□□□ 0.48
SS18-215ENST00000580642 TNNI2P48788 182 aa18.03■□□□□ 0.48
SS18-215ENST00000580642 SART3Q15020 963 aaKnown RBP18.03■□□□□ 0.48
SS18-215ENST00000580642 CCDC178Q5BJE1 867 aa18.03■□□□□ 0.48
SS18-215ENST00000580642 C16orf86Q6ZW13 317 aa18.03■□□□□ 0.48
SS18-215ENST00000580642 METTL16Q86W50 562 aaKnown RBP18.03■□□□□ 0.48
SS18-215ENST00000580642 FOXP4Q8IVH2 680 aaPredicted RBP18.03■□□□□ 0.48
SS18-215ENST00000580642 TMTC2Q8N394 836 aa18.03■□□□□ 0.48
SS18-215ENST00000580642 SH2B1Q9NRF2 756 aaPredicted RBP18.03■□□□□ 0.48
SS18-215ENST00000580642 PI4KBQ9UBF8 816 aa18.03■□□□□ 0.48
SS18-215ENST00000580642 FAM198AQ9UFP1 575 aa18.03■□□□□ 0.48
SS18-215ENST00000580642 LIMCH1Q9UPQ0 1083 aa18.03■□□□□ 0.48
SS18-215ENST00000580642 FOCADQ5VW36 1801 aa18.02■□□□□ 0.48
SS18-215ENST00000580642 LMOD1P29536 600 aaPredicted RBP18.02■□□□□ 0.48
SS18-215ENST00000580642 EVCP57679 992 aa18.02■□□□□ 0.48
SS18-215ENST00000580642 CTDSPL2Q05D32 466 aa18.02■□□□□ 0.48
SS18-215ENST00000580642 GABPAQ06546 454 aa18.02■□□□□ 0.48
SS18-215ENST00000580642 DDX4Q9NQI0 724 aaKnown RBP18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms