RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 CDK8P49336 464 aa7.29□□□□□ -1.24
CD44-215ENST00000525241 FAM160A1Q05DH4 1040 aa7.29□□□□□ -1.24
CD44-215ENST00000525241 INPP5AQ14642 412 aa7.29□□□□□ -1.24
CD44-215ENST00000525241 ZNF394Q53GI3 561 aa7.29□□□□□ -1.24
CD44-215ENST00000525241 BNC2Q6ZN30 1099 aaPredicted RBP7.29□□□□□ -1.24
CD44-215ENST00000525241 IGSF5Q9NSI5 407 aa7.29□□□□□ -1.24
CD44-215ENST00000525241 FAM105AQ9NUU6 356 aa7.29□□□□□ -1.24
CD44-215ENST00000525241 ADAMTS1Q9UHI8 967 aa7.29□□□□□ -1.24
CD44-215ENST00000525241 FAM221AA4D161 298 aa7.28□□□□□ -1.24
CD44-215ENST00000525241 DCDC2CA8MYV0 355 aa7.28□□□□□ -1.24
CD44-215ENST00000525241 GAS2O43903 313 aaKnown RBP7.28□□□□□ -1.24
CD44-215ENST00000525241 BMP3P12645 472 aa7.28□□□□□ -1.24
CD44-215ENST00000525241 EIF4A3P38919 411 aaKnown RBP7.28□□□□□ -1.24
CD44-215ENST00000525241 ASPAP45381 313 aa7.28□□□□□ -1.24
CD44-215ENST00000525241 ERVK-24P63145 666 aa7.28□□□□□ -1.24
CD44-215ENST00000525241 RACK1P63244 317 aaKnown RBP7.28□□□□□ -1.24
CD44-215ENST00000525241 RING1Q06587 406 aa7.28□□□□□ -1.24
CD44-215ENST00000525241 SGO2Q562F6 1265 aa7.28□□□□□ -1.24
CD44-215ENST00000525241 NKAPLQ5M9Q1 402 aa7.28□□□□□ -1.24
CD44-215ENST00000525241 CDPF1Q6NVV7 123 aa7.28□□□□□ -1.24
CD44-215ENST00000525241 FBXL19Q6PCT2 694 aa7.28□□□□□ -1.24
CD44-215ENST00000525241 LRFN4Q6PJG9 635 aa7.28□□□□□ -1.24
CD44-215ENST00000525241 USP48Q86UV5 1035 aa7.28□□□□□ -1.24
CD44-215ENST00000525241 NT5DC4Q86YG4 428 aa7.28□□□□□ -1.24
CD44-215ENST00000525241 FAM20CQ8IXL6 584 aa7.28□□□□□ -1.24
CD44-215ENST00000525241 JARID2Q92833 1246 aaPredicted RBP7.28□□□□□ -1.24
CD44-215ENST00000525241 DDX41Q9UJV9 622 aaKnown RBP7.28□□□□□ -1.24
CD44-215ENST00000525241 HIF3AQ9Y2N7 669 aa7.28□□□□□ -1.24
CD44-215ENST00000525241 PCDHGB7Q9Y5F8 929 aa7.28□□□□□ -1.24
CD44-215ENST00000525241 CSADQ9Y600 493 aa7.28□□□□□ -1.24
CD44-215ENST00000525241 DHX15O43143 795 aaKnown RBP7.27□□□□□ -1.25
CD44-215ENST00000525241 GREM1O60565 184 aa7.27□□□□□ -1.25
CD44-215ENST00000525241 F13A1P00488 732 aa7.27□□□□□ -1.25
CD44-215ENST00000525241 TCF3P15923 654 aa7.27□□□□□ -1.25
CD44-215ENST00000525241 USP11P51784 963 aa7.27□□□□□ -1.25
CD44-215ENST00000525241 RSPO4Q2I0M5 234 aaPredicted RBP7.27□□□□□ -1.25
CD44-215ENST00000525241 C12orf40Q86WS4 652 aa7.27□□□□□ -1.25
CD44-215ENST00000525241 GOLM1Q8NBJ4 401 aa7.27□□□□□ -1.25
CD44-215ENST00000525241 FBLIM1Q8WUP2 373 aa7.27□□□□□ -1.25
CD44-215ENST00000525241 ZNF296Q8WUU4 475 aaPredicted RBP7.27□□□□□ -1.25
CD44-215ENST00000525241 GATAD2BQ8WXI9 593 aa7.27□□□□□ -1.25
CD44-215ENST00000525241 PLPPR2Q96GM1 343 aa7.27□□□□□ -1.25
CD44-215ENST00000525241 ATXN3LQ9H3M9 355 aa7.27□□□□□ -1.25
CD44-215ENST00000525241 SNCAIPQ9Y6H5 919 aa7.27□□□□□ -1.25
CD44-215ENST00000525241 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.26□□□□□ -1.25
CD44-215ENST00000525241 GFRA2O00451 464 aa7.26□□□□□ -1.25
CD44-215ENST00000525241 CILPO75339 1184 aa7.26□□□□□ -1.25
CD44-215ENST00000525241 MAP4P27816 1152 aaKnown RBP7.26□□□□□ -1.25
CD44-215ENST00000525241 PPM1JQ5JR12 505 aa7.26□□□□□ -1.25
CD44-215ENST00000525241 WIPI1Q5MNZ9 446 aaPredicted RBP7.26□□□□□ -1.25
CD44-215ENST00000525241 SNAP47Q5SQN1 464 aa7.26□□□□□ -1.25
CD44-215ENST00000525241 PRR23CQ6ZRP0 262 aa7.26□□□□□ -1.25
CD44-215ENST00000525241 CYFIP1Q7L576 1253 aa7.26□□□□□ -1.25
CD44-215ENST00000525241 HDXQ7Z353 690 aa7.26□□□□□ -1.25
CD44-215ENST00000525241 EZH1Q92800 747 aaPredicted RBP7.26□□□□□ -1.25
CD44-215ENST00000525241 ACSS3Q9H6R3 686 aa7.26□□□□□ -1.25
CD44-215ENST00000525241 NEFMP07197 916 aa7.25□□□□□ -1.25
CD44-215ENST00000525241 H2AFB1P0C5Y9 115 aa7.25□□□□□ -1.25
CD44-215ENST00000525241 H2AFB2P0C5Z0 115 aa7.25□□□□□ -1.25
CD44-215ENST00000525241 NTF4P34130 210 aa7.25□□□□□ -1.25
CD44-215ENST00000525241 RPL6Q02878 288 aaKnown RBP7.25□□□□□ -1.25
CD44-215ENST00000525241 RAD51AP2Q09MP3 1159 aa7.25□□□□□ -1.25
CD44-215ENST00000525241 TTLL4Q14679 1199 aa7.25□□□□□ -1.25
CD44-215ENST00000525241 FAM196AQ6ZSG2 479 aa7.25□□□□□ -1.25
CD44-215ENST00000525241 BEND4Q6ZU67 534 aa7.25□□□□□ -1.25
CD44-215ENST00000525241 RNF214Q8ND24 703 aa7.25□□□□□ -1.25
CD44-215ENST00000525241 ELMO3Q96BJ8 720 aa7.25□□□□□ -1.25
CD44-215ENST00000525241 RAXQ9Y2V3 346 aa7.25□□□□□ -1.25
CD44-215ENST00000525241 SUPT16HQ9Y5B9 1047 aaKnown RBP7.25□□□□□ -1.25
CD44-215ENST00000525241 NFICP08651 508 aa7.24□□□□□ -1.25
CD44-215ENST00000525241 HCLS1P14317 486 aaPredicted RBP7.24□□□□□ -1.25
CD44-215ENST00000525241 RAB6AP20340 208 aa7.24□□□□□ -1.25
CD44-215ENST00000525241 ZBTB37Q5TC79 503 aa7.24□□□□□ -1.25
CD44-215ENST00000525241 CLEC10AQ8IUN9 316 aa7.24□□□□□ -1.25
CD44-215ENST00000525241 ZNF654Q8IZM8 581 aa7.24□□□□□ -1.25
CD44-215ENST00000525241 FBXO27Q8NI29 283 aa7.24□□□□□ -1.25
CD44-215ENST00000525241 FAM83CQ9BQN1 747 aa7.24□□□□□ -1.25
CD44-215ENST00000525241 KCNF1Q9H3M0 494 aa7.24□□□□□ -1.25
CD44-215ENST00000525241 SEMA6CQ9H3T2 930 aa7.24□□□□□ -1.25
CD44-215ENST00000525241 STOML1Q9UBI4 398 aa7.24□□□□□ -1.25
CD44-215ENST00000525241 HMX2A2RU54 273 aa7.23□□□□□ -1.25
CD44-215ENST00000525241 FANCGO15287 622 aa7.23□□□□□ -1.25
CD44-215ENST00000525241 FURINP09958 794 aa7.23□□□□□ -1.25
CD44-215ENST00000525241 RXRBP28702 533 aa7.23□□□□□ -1.25
CD44-215ENST00000525241 CRKP46108 304 aa7.23□□□□□ -1.25
CD44-215ENST00000525241 SMYD4Q8IYR2 804 aaPredicted RBP7.23□□□□□ -1.25
CD44-215ENST00000525241 ISL2Q96A47 359 aa7.23□□□□□ -1.25
CD44-215ENST00000525241 EAF1Q96JC9 268 aaPredicted RBP7.23□□□□□ -1.25
CD44-215ENST00000525241 SPON2Q9BUD6 331 aa7.23□□□□□ -1.25
CD44-215ENST00000525241 YIPF2Q9BWQ6 316 aa7.23□□□□□ -1.25
CD44-215ENST00000525241 C7orf69Q9H7B7 122 aa7.23□□□□□ -1.25
CD44-215ENST00000525241 PIDD1Q9HB75 910 aa7.23□□□□□ -1.25
CD44-215ENST00000525241 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.23□□□□□ -1.25
CD44-215ENST00000525241 ROBO2Q9HCK4 1378 aa7.22□□□□□ -1.25
CD44-215ENST00000525241 FAM95CA0A1B0GW59 222 aa7.22□□□□□ -1.25
CD44-215ENST00000525241 PRAMEF27A3QJZ7 478 aa7.22□□□□□ -1.25
CD44-215ENST00000525241 DYRK3O43781 588 aa7.22□□□□□ -1.25
CD44-215ENST00000525241 MPP2Q14168 576 aa7.22□□□□□ -1.25
CD44-215ENST00000525241 SEZ6L2Q6UXD5 910 aa7.22□□□□□ -1.25
CD44-215ENST00000525241 KIAA0825Q8IV33 1275 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms