RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 MCCP23508 829 aa23.1■■□□□ 1.29
USP39-218ENST00000493829 EVX2Q03828 476 aa23.1■■□□□ 1.29
USP39-218ENST00000493829 CREB3L3Q68CJ9 461 aa23.1■■□□□ 1.29
USP39-218ENST00000493829 STK11IPQ8N1F8 1099 aa23.1■■□□□ 1.29
USP39-218ENST00000493829 HACL1Q9UJ83 578 aa23.1■■□□□ 1.29
USP39-218ENST00000493829 TAF6LQ9Y6J9 622 aa23.1■■□□□ 1.29
USP39-218ENST00000493829 WDR90Q96KV7 1748 aa23.1■■□□□ 1.29
USP39-218ENST00000493829 RPAP1Q9BWH6 1393 aaPredicted RBP23.09■■□□□ 1.29
USP39-218ENST00000493829 MINDY4BA8MYZ0 360 aa23.09■■□□□ 1.29
USP39-218ENST00000493829 SLC27A2O14975 620 aa23.09■■□□□ 1.29
USP39-218ENST00000493829 MMP14P50281 582 aa23.09■■□□□ 1.29
USP39-218ENST00000493829 ADARB2Q9NS39 739 aaKnown RBP23.09■■□□□ 1.29
USP39-218ENST00000493829 MYH1P12882 1939 aa23.09■■□□□ 1.29
USP39-218ENST00000493829 SMIM22K7EJ46 135 aa23.09■■□□□ 1.29
USP39-218ENST00000493829 HSPA4P34932 840 aa23.09■■□□□ 1.29
USP39-218ENST00000493829 NECTIN1Q15223 517 aa23.09■■□□□ 1.29
USP39-218ENST00000493829 TBC1D32Q96NH3 1257 aa23.09■■□□□ 1.29
USP39-218ENST00000493829 FAM198AQ9UFP1 575 aa23.09■■□□□ 1.29
USP39-218ENST00000493829 CTNNA3Q9UI47 895 aa23.09■■□□□ 1.29
USP39-218ENST00000493829 USP17L12C9JPN9 530 aa23.08■■□□□ 1.29
USP39-218ENST00000493829 USP17L21D6R901 530 aa23.08■■□□□ 1.29
USP39-218ENST00000493829 HIRAP54198 1017 aaPredicted RBP23.08■■□□□ 1.29
USP39-218ENST00000493829 CTR9Q6PD62 1173 aa23.08■■□□□ 1.29
USP39-218ENST00000493829 ZFPM1Q8IX07 1006 aa23.08■■□□□ 1.29
USP39-218ENST00000493829 MKRN1Q9UHC7 482 aaKnown RBP23.08■■□□□ 1.29
USP39-218ENST00000493829 SCN4AP35499 1836 aa23.07■■□□□ 1.28
USP39-218ENST00000493829 ZMYM6O95789 1325 aa23.07■■□□□ 1.28
USP39-218ENST00000493829 CYP21A2P08686 494 aa23.07■■□□□ 1.28
USP39-218ENST00000493829 EPHX2P34913 555 aa23.07■■□□□ 1.28
USP39-218ENST00000493829 CTDSPL2Q05D32 466 aa23.07■■□□□ 1.28
USP39-218ENST00000493829 ALX1Q15699 326 aa23.07■■□□□ 1.28
USP39-218ENST00000493829 IMMTQ16891 758 aaKnown RBP23.07■■□□□ 1.28
USP39-218ENST00000493829 RASEFQ8IZ41 740 aa23.07■■□□□ 1.28
USP39-218ENST00000493829 OSBPL5Q9H0X9 879 aaPredicted RBP23.07■■□□□ 1.28
USP39-218ENST00000493829 POLR3DP05423 398 aaPredicted RBP23.06■■□□□ 1.28
USP39-218ENST00000493829 ANGEL2Q5VTE6 544 aaKnown RBP23.06■■□□□ 1.28
USP39-218ENST00000493829 GIMAP6Q6P9H5 292 aa23.06■■□□□ 1.28
USP39-218ENST00000493829 IDI2Q9BXS1 227 aa23.06■■□□□ 1.28
USP39-218ENST00000493829 GGA3Q9NZ52 723 aa23.06■■□□□ 1.28
USP39-218ENST00000493829 ARPP21Q9UBL0 812 aaPredicted RBP23.06■■□□□ 1.28
USP39-218ENST00000493829 ZNF213O14771 459 aa23.06■■□□□ 1.28
USP39-218ENST00000493829 EPB41L2O43491 1005 aaKnown RBP23.06■■□□□ 1.28
USP39-218ENST00000493829 PPARAQ07869 468 aa23.06■■□□□ 1.28
USP39-218ENST00000493829 EAPPQ56P03 285 aaPredicted RBP23.06■■□□□ 1.28
USP39-218ENST00000493829 RNF20Q5VTR2 975 aa23.06■■□□□ 1.28
USP39-218ENST00000493829 ZSCAN29Q8IWY8 852 aaPredicted RBP23.06■■□□□ 1.28
USP39-218ENST00000493829 SNX14Q9Y5W7 946 aa23.06■■□□□ 1.28
USP39-218ENST00000493829 CNTNAP1P78357 1384 aa23.05■■□□□ 1.28
USP39-218ENST00000493829 IQCA1LA6NCM1 817 aa23.05■■□□□ 1.28
USP39-218ENST00000493829 TBC1D10CQ8IV04 446 aa23.05■■□□□ 1.28
USP39-218ENST00000493829 AMOTL1Q8IY63 956 aa23.05■■□□□ 1.28
USP39-218ENST00000493829 NBPF3Q9H094 633 aa23.05■■□□□ 1.28
USP39-218ENST00000493829 POTECB2RU33 542 aa23.04■■□□□ 1.28
USP39-218ENST00000493829 ZKSCAN1P17029 563 aaPredicted RBP23.03■■□□□ 1.28
USP39-218ENST00000493829 RBM25P49756 843 aaKnown RBP23.03■■□□□ 1.28
USP39-218ENST00000493829 TMEM39BQ9GZU3 492 aa23.03■■□□□ 1.28
USP39-218ENST00000493829 TAF1DQ9H5J8 278 aaPredicted RBP23.03■■□□□ 1.28
USP39-218ENST00000493829 PLCD1P51178 756 aa23.03■■□□□ 1.28
USP39-218ENST00000493829 RRAGCQ9HB90 399 aa23.03■■□□□ 1.28
USP39-218ENST00000493829 INCENPQ9NQS7 918 aa23.03■■□□□ 1.28
USP39-218ENST00000493829 DDTLA6NHG4 134 aaPredicted RBP23.02■■□□□ 1.28
USP39-218ENST00000493829 C12orf60Q5U649 245 aa23.02■■□□□ 1.28
USP39-218ENST00000493829 STOX1Q6ZVD7 989 aa23.02■■□□□ 1.28
USP39-218ENST00000493829 SH3BP5LQ7L8J4 393 aa23.02■■□□□ 1.28
USP39-218ENST00000493829 CDAN1Q8IWY9 1227 aa23.02■■□□□ 1.28
USP39-218ENST00000493829 DYNLL2Q96FJ2 89 aa23.02■■□□□ 1.28
USP39-218ENST00000493829 TSHZ2Q9NRE2 1034 aa23.02■■□□□ 1.28
USP39-218ENST00000493829 SIPA1L1O43166 1804 aa23.02■■□□□ 1.28
USP39-218ENST00000493829 ENTPD3O75355 529 aa23.01■■□□□ 1.27
USP39-218ENST00000493829 ADCK5Q3MIX3 580 aa23.01■■□□□ 1.27
USP39-218ENST00000493829 SBK1Q52WX2 424 aa23.01■■□□□ 1.27
USP39-218ENST00000493829 NMRK2Q9NPI5 230 aa23.01■■□□□ 1.27
USP39-218ENST00000493829 SLURP2P0DP57 97 aa23■■□□□ 1.27
USP39-218ENST00000493829 TNNI2P48788 182 aa23■■□□□ 1.27
USP39-218ENST00000493829 RASA3Q14644 834 aa23■■□□□ 1.27
USP39-218ENST00000493829 USP50Q70EL3 339 aaPredicted RBP23■■□□□ 1.27
USP39-218ENST00000493829 JAKMIP1Q96N16 626 aaKnown RBP23■■□□□ 1.27
USP39-218ENST00000493829 TOMM22Q9NS69 142 aa23■■□□□ 1.27
USP39-218ENST00000493829 TACC3Q9Y6A5 838 aa23■■□□□ 1.27
USP39-218ENST00000493829 NEDD4P46934 1319 aa23■■□□□ 1.27
USP39-218ENST00000493829 E7EWF7 191 aa23■■□□□ 1.27
USP39-218ENST00000493829 TNFAIP1Q13829 316 aa23■■□□□ 1.27
USP39-218ENST00000493829 APOBEC3FQ8IUX4 373 aaKnown RBP23■■□□□ 1.27
USP39-218ENST00000493829 SLC44A5Q8NCS7 719 aa23■■□□□ 1.27
USP39-218ENST00000493829 FAM151AQ8WW52 585 aa23■■□□□ 1.27
USP39-218ENST00000493829 KCNB2Q92953 911 aa23■■□□□ 1.27
USP39-218ENST00000493829 FAM196BA6NMK8 535 aa22.99■■□□□ 1.27
USP39-218ENST00000493829 NPM3O75607 178 aaKnown RBP22.99■■□□□ 1.27
USP39-218ENST00000493829 PRDM1O75626 825 aa22.99■■□□□ 1.27
USP39-218ENST00000493829 HLA-DOAP06340 250 aa22.99■■□□□ 1.27
USP39-218ENST00000493829 COL9A3Q14050 684 aaPredicted RBP22.99■■□□□ 1.27
USP39-218ENST00000493829 RRP12Q5JTH9 1297 aaKnown RBP22.99■■□□□ 1.27
USP39-218ENST00000493829 FKBP1CQ5VVH2 108 aa22.99■■□□□ 1.27
USP39-218ENST00000493829 CSRNP1Q96S65 589 aa22.99■■□□□ 1.27
USP39-218ENST00000493829 KIF2CQ99661 725 aa22.99■■□□□ 1.27
USP39-218ENST00000493829 POTEIP0CG38 1075 aa22.98■■□□□ 1.27
USP39-218ENST00000493829 POTEJP0CG39 1038 aa22.98■■□□□ 1.27
USP39-218ENST00000493829 CPA1P15085 419 aa22.98■■□□□ 1.27
USP39-218ENST00000493829 TTC6Q86TZ1 520 aa22.98■■□□□ 1.27
USP39-218ENST00000493829 FAM83AQ86UY5 434 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms