RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 ZAP70P43403 619 aa18.44■□□□□ 0.54
USP39-217ENST00000491659 DGKZQ13574 1117 aa18.44■□□□□ 0.54
USP39-217ENST00000491659 ERO1BQ86YB8 467 aa18.44■□□□□ 0.54
USP39-217ENST00000491659 CLASRPQ8N2M8 674 aaKnown RBP18.44■□□□□ 0.54
USP39-217ENST00000491659 ABHD8Q96I13 439 aa18.44■□□□□ 0.54
USP39-217ENST00000491659 CFHR5Q9BXR6 569 aa18.44■□□□□ 0.54
USP39-217ENST00000491659 DOCK1Q14185 1865 aa18.43■□□□□ 0.54
USP39-217ENST00000491659 RAB11FIP3O75154 756 aa18.43■□□□□ 0.54
USP39-217ENST00000491659 GTF2A2P52657 109 aa18.43■□□□□ 0.54
USP39-217ENST00000491659 RHBDL3P58872 404 aa18.43■□□□□ 0.54
USP39-217ENST00000491659 ZFPM1Q8IX07 1006 aa18.43■□□□□ 0.54
USP39-217ENST00000491659 CNKSR2Q8WXI2 1034 aa18.43■□□□□ 0.54
USP39-217ENST00000491659 ZKSCAN4Q969J2 545 aaPredicted RBP18.43■□□□□ 0.54
USP39-217ENST00000491659 MCOLN1Q9GZU1 580 aa18.43■□□□□ 0.54
USP39-217ENST00000491659 COL2A1P02458 1487 aaPredicted RBP18.42■□□□□ 0.54
USP39-217ENST00000491659 IGF2BP3O00425 579 aaKnown RBP eCLIP18.42■□□□□ 0.54
USP39-217ENST00000491659 BAG3O95817 575 aa18.42■□□□□ 0.54
USP39-217ENST00000491659 INPP5BP32019 993 aa18.42■□□□□ 0.54
USP39-217ENST00000491659 NOM1Q5C9Z4 860 aaKnown RBP18.42■□□□□ 0.54
USP39-217ENST00000491659 DDX4Q9NQI0 724 aaKnown RBP18.42■□□□□ 0.54
USP39-217ENST00000491659 ATRNL1Q5VV63 1379 aa18.42■□□□□ 0.54
USP39-217ENST00000491659 CCL15-CCL14A0A0B4J2E2 113 aa18.41■□□□□ 0.54
USP39-217ENST00000491659 TESPA1A2RU30 521 aaPredicted RBP18.41■□□□□ 0.54
USP39-217ENST00000491659 GPR25O00155 361 aa18.41■□□□□ 0.54
USP39-217ENST00000491659 NPM3O75607 178 aaKnown RBP18.41■□□□□ 0.54
USP39-217ENST00000491659 IFIT2P09913 472 aaKnown RBP18.41■□□□□ 0.54
USP39-217ENST00000491659 PLCG2P16885 1265 aa18.41■□□□□ 0.54
USP39-217ENST00000491659 PPIL2Q13356 520 aa18.41■□□□□ 0.54
USP39-217ENST00000491659 CCL15Q16663 113 aa18.41■□□□□ 0.54
USP39-217ENST00000491659 TEX11Q8IYF3 940 aa18.41■□□□□ 0.54
USP39-217ENST00000491659 PIH1D3Q9NQM4 214 aaKnown RBP18.41■□□□□ 0.54
USP39-217ENST00000491659 AATFQ9NY61 560 aaKnown RBP eCLIP18.41■□□□□ 0.54
USP39-217ENST00000491659 ZNF112Q9UJU3 913 aa18.41■□□□□ 0.54
USP39-217ENST00000491659 ATAD5Q96QE3 1844 aa18.4■□□□□ 0.54
USP39-217ENST00000491659 IDH1O75874 414 aaKnown RBP18.4■□□□□ 0.54
USP39-217ENST00000491659 SH3BP5LQ7L8J4 393 aa18.4■□□□□ 0.54
USP39-217ENST00000491659 CTU1Q7Z7A3 348 aaKnown RBP18.4■□□□□ 0.54
USP39-217ENST00000491659 ZNF296Q8WUU4 475 aaPredicted RBP18.4■□□□□ 0.54
USP39-217ENST00000491659 MS4A4AQ96JQ5 239 aa18.4■□□□□ 0.54
USP39-217ENST00000491659 BCL11AQ9H165 835 aa18.4■□□□□ 0.54
USP39-217ENST00000491659 DDTLA6NHG4 134 aaPredicted RBP18.39■□□□□ 0.53
USP39-217ENST00000491659 FKTNO75072 461 aa18.39■□□□□ 0.53
USP39-217ENST00000491659 RRP1P56182 461 aaKnown RBP18.39■□□□□ 0.53
USP39-217ENST00000491659 PPATQ06203 517 aa18.39■□□□□ 0.53
USP39-217ENST00000491659 SNAPC2Q13487 334 aa18.39■□□□□ 0.53
USP39-217ENST00000491659 NOL9Q5SY16 702 aaKnown RBP18.39■□□□□ 0.53
USP39-217ENST00000491659 SH3RF3Q8TEJ3 882 aaPredicted RBP18.39■□□□□ 0.53
USP39-217ENST00000491659 OSBPL5Q9H0X9 879 aaPredicted RBP18.39■□□□□ 0.53
USP39-217ENST00000491659 IRF6O14896 467 aa18.38■□□□□ 0.53
USP39-217ENST00000491659 CETPP11597 493 aa18.38■□□□□ 0.53
USP39-217ENST00000491659 MAP3K12Q12852 859 aa18.38■□□□□ 0.53
USP39-217ENST00000491659 BRI3BPQ8WY22 251 aa18.38■□□□□ 0.53
USP39-217ENST00000491659 PTPN18Q99952 460 aa18.38■□□□□ 0.53
USP39-217ENST00000491659 NDUFB9Q9Y6M9 179 aa18.38■□□□□ 0.53
USP39-217ENST00000491659 CYP7A1P22680 504 aa18.37■□□□□ 0.53
USP39-217ENST00000491659 PPP4CP60510 307 aa18.37■□□□□ 0.53
USP39-217ENST00000491659 CRHR2Q13324 411 aa18.37■□□□□ 0.53
USP39-217ENST00000491659 TTF1Q15361 905 aaPredicted RBP18.37■□□□□ 0.53
USP39-217ENST00000491659 TMED8Q6PL24 325 aaPredicted RBP18.37■□□□□ 0.53
USP39-217ENST00000491659 ADGRA1Q86SQ6 560 aa18.37■□□□□ 0.53
USP39-217ENST00000491659 CERS3Q8IU89 383 aa18.37■□□□□ 0.53
USP39-217ENST00000491659 SCYL3Q8IZE3 742 aa18.37■□□□□ 0.53
USP39-217ENST00000491659 MAGEB6Q8N7X4 407 aa18.37■□□□□ 0.53
USP39-217ENST00000491659 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.37■□□□□ 0.53
USP39-217ENST00000491659 LRRCC1Q9C099 1032 aa18.37■□□□□ 0.53
USP39-217ENST00000491659 R3HDMLQ9H3Y0 253 aa18.37■□□□□ 0.53
USP39-217ENST00000491659 PICK1Q9NRD5 415 aa18.37■□□□□ 0.53
USP39-217ENST00000491659 SIPA1L1O43166 1804 aa18.37■□□□□ 0.53
USP39-217ENST00000491659 MYH1P12882 1939 aa18.36■□□□□ 0.53
USP39-217ENST00000491659 MAP3K10Q02779 954 aa18.36■□□□□ 0.53
USP39-217ENST00000491659 TAF1CQ15572 869 aaPredicted RBP18.36■□□□□ 0.53
USP39-217ENST00000491659 ANTXR1Q9H6X2 564 aa18.36■□□□□ 0.53
USP39-217ENST00000491659 MYH7P12883 1935 aa18.35■□□□□ 0.53
USP39-217ENST00000491659 NAV1Q8NEY1 1877 aa18.35■□□□□ 0.53
USP39-217ENST00000491659 PHIPQ8WWQ0 1821 aa18.35■□□□□ 0.53
USP39-217ENST00000491659 FLT1P17948 1338 aa18.35■□□□□ 0.53
USP39-217ENST00000491659 PHF20L1A8MW92 1017 aa18.35■□□□□ 0.53
USP39-217ENST00000491659 DNAJC2Q99543 621 aaKnown RBP18.35■□□□□ 0.53
USP39-217ENST00000491659 DHX36Q9H2U1 1008 aaKnown RBP18.35■□□□□ 0.53
USP39-217ENST00000491659 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.35■□□□□ 0.53
USP39-217ENST00000491659 ZFYVE28Q9HCC9 887 aa18.35■□□□□ 0.53
USP39-217ENST00000491659 ZCCHC17Q9NP64 241 aaKnown RBP18.35■□□□□ 0.53
USP39-217ENST00000491659 PTPRFP10586 1907 aa18.35■□□□□ 0.53
USP39-217ENST00000491659 CCDC85CA6NKD9 419 aa18.34■□□□□ 0.53
USP39-217ENST00000491659 TBC1D12O60347 775 aa18.34■□□□□ 0.53
USP39-217ENST00000491659 CTNND1O60716 968 aaKnown RBP18.34■□□□□ 0.53
USP39-217ENST00000491659 MAPKAPK5Q8IW41 473 aa18.34■□□□□ 0.53
USP39-217ENST00000491659 FAM43AQ8N2R8 423 aa18.34■□□□□ 0.53
USP39-217ENST00000491659 TGFBRAP1Q8WUH2 860 aa18.34■□□□□ 0.53
USP39-217ENST00000491659 KCNH4Q9UQ05 1017 aa18.34■□□□□ 0.53
USP39-217ENST00000491659 DYNLL1P63167 89 aaKnown RBP18.33■□□□□ 0.52
USP39-217ENST00000491659 PKN2Q16513 984 aaKnown RBP18.33■□□□□ 0.52
USP39-217ENST00000491659 MIGA1Q8NAN2 632 aa18.33■□□□□ 0.52
USP39-217ENST00000491659 HERC5Q9UII4 1024 aaKnown RBP18.33■□□□□ 0.52
USP39-217ENST00000491659 DDX60LQ5H9U9 1706 aaKnown RBP18.32■□□□□ 0.52
USP39-217ENST00000491659 FAM196BA6NMK8 535 aa18.32■□□□□ 0.52
USP39-217ENST00000491659 BTBD19C9JJ37 291 aa18.32■□□□□ 0.52
USP39-217ENST00000491659 GOLIM4O00461 696 aa18.32■□□□□ 0.52
USP39-217ENST00000491659 SLURP2P0DP57 97 aa18.32■□□□□ 0.52
USP39-217ENST00000491659 PTPRAP18433 802 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms