RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 PRC1O43663 620 aa22.07■■□□□ 1.12
CLN3-204ENST00000357857 LARGE1O95461 756 aa22.07■■□□□ 1.12
CLN3-204ENST00000357857 DDIT3P35638 169 aa22.07■■□□□ 1.12
CLN3-204ENST00000357857 RHBDL3P58872 404 aa22.07■■□□□ 1.12
CLN3-204ENST00000357857 SBK1Q52WX2 424 aa22.07■■□□□ 1.12
CLN3-204ENST00000357857 KIAA0825Q8IV33 1275 aa22.07■■□□□ 1.12
CLN3-204ENST00000357857 TGFBRAP1Q8WUH2 860 aa22.07■■□□□ 1.12
CLN3-204ENST00000357857 MRIQ9BWK5 157 aa22.07■■□□□ 1.12
CLN3-204ENST00000357857 AGXT2Q9BYV1 514 aa22.07■■□□□ 1.12
CLN3-204ENST00000357857 KRT23Q9C075 422 aa22.07■■□□□ 1.12
CLN3-204ENST00000357857 MKRN1Q9UHC7 482 aaKnown RBP22.07■■□□□ 1.12
CLN3-204ENST00000357857 TACC3Q9Y6A5 838 aa22.07■■□□□ 1.12
CLN3-204ENST00000357857 DDX60LQ5H9U9 1706 aaKnown RBP22.07■■□□□ 1.12
CLN3-204ENST00000357857 CYP2D7A0A087X1C5 515 aa22.06■■□□□ 1.12
CLN3-204ENST00000357857 B4E1Z4 1266 aa22.06■■□□□ 1.12
CLN3-204ENST00000357857 NFKBIEO00221 500 aa22.06■■□□□ 1.12
CLN3-204ENST00000357857 HDLBPQ00341 1268 aaKnown RBP22.06■■□□□ 1.12
CLN3-204ENST00000357857 ME3Q16798 604 aa22.06■■□□□ 1.12
CLN3-204ENST00000357857 INCENPQ9NQS7 918 aa22.06■■□□□ 1.12
CLN3-204ENST00000357857 MCM9Q9NXL9 1143 aa22.06■■□□□ 1.12
CLN3-204ENST00000357857 CHMP5Q9NZZ3 219 aa22.06■■□□□ 1.12
CLN3-204ENST00000357857 CRKP46108 304 aa22.06■■□□□ 1.12
CLN3-204ENST00000357857 ANTXR2P58335 489 aa22.06■■□□□ 1.12
CLN3-204ENST00000357857 FBXL16Q8N461 479 aa22.06■■□□□ 1.12
CLN3-204ENST00000357857 BRF1Q92994 677 aa22.06■■□□□ 1.12
CLN3-204ENST00000357857 CWC22Q9HCG8 908 aaKnown RBP22.06■■□□□ 1.12
CLN3-204ENST00000357857 ZNRF3Q9ULT6 936 aa22.06■■□□□ 1.12
CLN3-204ENST00000357857 MYO3BQ8WXR4 1341 aa22.05■■□□□ 1.12
CLN3-204ENST00000357857 LTBP3Q9NS15 1303 aa22.05■■□□□ 1.12
CLN3-204ENST00000357857 STK11IPQ8N1F8 1099 aa22.05■■□□□ 1.12
CLN3-204ENST00000357857 CIZ1Q9ULV3 898 aaPredicted RBP22.05■■□□□ 1.12
CLN3-204ENST00000357857 RAD17O75943 681 aa22.04■■□□□ 1.12
CLN3-204ENST00000357857 USP17L8P0C7I0 530 aa22.04■■□□□ 1.12
CLN3-204ENST00000357857 RSBN1LQ6PCB5 846 aaPredicted RBP22.04■■□□□ 1.12
CLN3-204ENST00000357857 CYB5R4Q7L1T6 521 aa22.04■■□□□ 1.12
CLN3-204ENST00000357857 MAPKAPK5Q8IW41 473 aa22.04■■□□□ 1.12
CLN3-204ENST00000357857 ZDHHC15Q96MV8 337 aa22.04■■□□□ 1.12
CLN3-204ENST00000357857 TOMM22Q9NS69 142 aa22.04■■□□□ 1.12
CLN3-204ENST00000357857 PSMD14O00487 310 aa22.03■■□□□ 1.12
CLN3-204ENST00000357857 SLC3A2P08195 630 aaKnown RBP22.03■■□□□ 1.12
CLN3-204ENST00000357857 VIL1P09327 827 aaKnown RBP22.03■■□□□ 1.12
CLN3-204ENST00000357857 CYP2D6P10635 497 aa22.03■■□□□ 1.12
CLN3-204ENST00000357857 PCP11498 1178 aaKnown RBP22.03■■□□□ 1.12
CLN3-204ENST00000357857 RRP12Q5JTH9 1297 aaKnown RBP22.03■■□□□ 1.12
CLN3-204ENST00000357857 AMOTL1Q8IY63 956 aa22.03■■□□□ 1.12
CLN3-204ENST00000357857 NKX2-3Q8TAU0 364 aa22.03■■□□□ 1.12
CLN3-204ENST00000357857 SMIM22K7EJ46 135 aa22.03■■□□□ 1.12
CLN3-204ENST00000357857 KDM4AO75164 1064 aa22.03■■□□□ 1.12
CLN3-204ENST00000357857 CCDC83Q8IWF9 413 aa22.03■■□□□ 1.12
CLN3-204ENST00000357857 JDP2Q8WYK2 163 aa22.03■■□□□ 1.12
CLN3-204ENST00000357857 FHDC1Q9C0D6 1143 aaPredicted RBP22.03■■□□□ 1.12
CLN3-204ENST00000357857 SERPINA10Q9UK55 444 aa22.03■■□□□ 1.12
CLN3-204ENST00000357857 FLT1P17948 1338 aa22.02■■□□□ 1.12
CLN3-204ENST00000357857 FGRP09769 529 aa22.02■■□□□ 1.12
CLN3-204ENST00000357857 APOBRQ0VD83 1088 aa22.02■■□□□ 1.12
CLN3-204ENST00000357857 C12orf60Q5U649 245 aa22.02■■□□□ 1.12
CLN3-204ENST00000357857 APOBEC3HQ6NTF7 200 aaKnown RBP22.02■■□□□ 1.12
CLN3-204ENST00000357857 USP40Q9NVE5 1235 aa22.02■■□□□ 1.12
CLN3-204ENST00000357857 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.02■■□□□ 1.12
CLN3-204ENST00000357857 NECAB1Q8N987 351 aa22.01■■□□□ 1.11
CLN3-204ENST00000357857 TMEM87BQ96K49 555 aa22.01■■□□□ 1.11
CLN3-204ENST00000357857 ZSWIM5Q9P217 1185 aa22.01■■□□□ 1.11
CLN3-204ENST00000357857 RBM5P52756 815 aaKnown RBP eCLIP22■■□□□ 1.11
CLN3-204ENST00000357857 RASSF7Q02833 373 aa22■■□□□ 1.11
CLN3-204ENST00000357857 EVX2Q03828 476 aa22■■□□□ 1.11
CLN3-204ENST00000357857 ST3GAL1Q11201 340 aa22■■□□□ 1.11
CLN3-204ENST00000357857 CDC42EP5Q6NZY7 148 aa22■■□□□ 1.11
CLN3-204ENST00000357857 ESR2Q92731 530 aa22■■□□□ 1.11
CLN3-204ENST00000357857 GPHNQ9NQX3 736 aaPredicted RBP22■■□□□ 1.11
CLN3-204ENST00000357857 SAP30BPQ9UHR5 308 aaKnown RBP22■■□□□ 1.11
CLN3-204ENST00000357857 POLR3DP05423 398 aaPredicted RBP22■■□□□ 1.11
CLN3-204ENST00000357857 STK3Q13188 491 aa22■■□□□ 1.11
CLN3-204ENST00000357857 ANGEL1Q9UNK9 670 aaKnown RBP22■■□□□ 1.11
CLN3-204ENST00000357857 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22■■□□□ 1.11
CLN3-204ENST00000357857 ROBO3Q96MS0 1386 aa21.99■■□□□ 1.11
CLN3-204ENST00000357857 SH2B2O14492 632 aaPredicted RBP21.99■■□□□ 1.11
CLN3-204ENST00000357857 ORC4O43929 436 aa21.99■■□□□ 1.11
CLN3-204ENST00000357857 EVCP57679 992 aa21.99■■□□□ 1.11
CLN3-204ENST00000357857 PDE4BQ07343 736 aa21.99■■□□□ 1.11
CLN3-204ENST00000357857 SLC4A8Q2Y0W8 1093 aa21.99■■□□□ 1.11
CLN3-204ENST00000357857 ZNF274Q96GC6 653 aaPredicted RBP21.99■■□□□ 1.11
CLN3-204ENST00000357857 GMLQ99445 158 aa21.99■■□□□ 1.11
CLN3-204ENST00000357857 WDHD1O75717 1129 aaPredicted RBP21.98■■□□□ 1.11
CLN3-204ENST00000357857 CXCL9Q07325 125 aa21.98■■□□□ 1.11
CLN3-204ENST00000357857 CIAPIN1Q6FI81 312 aa21.98■■□□□ 1.11
CLN3-204ENST00000357857 GTF3C6Q969F1 213 aa21.98■■□□□ 1.11
CLN3-204ENST00000357857 MTA3Q9BTC8 594 aa21.98■■□□□ 1.11
CLN3-204ENST00000357857 PFKFB2O60825 505 aa21.97■■□□□ 1.11
CLN3-204ENST00000357857 PICALMQ13492 652 aa21.97■■□□□ 1.11
CLN3-204ENST00000357857 CFAP100Q494V2 611 aa21.97■■□□□ 1.11
CLN3-204ENST00000357857 TMEM67Q5HYA8 995 aa21.97■■□□□ 1.11
CLN3-204ENST00000357857 AGBL3Q8NEM8 1001 aa21.97■■□□□ 1.11
CLN3-204ENST00000357857 IGDCC4Q8TDY8 1250 aa21.97■■□□□ 1.11
CLN3-204ENST00000357857 HDAC9Q9UKV0 1011 aa21.97■■□□□ 1.11
CLN3-204ENST00000357857 NAP1L2Q9ULW6 460 aaPredicted RBP21.97■■□□□ 1.11
CLN3-204ENST00000357857 SMC3Q9UQE7 1217 aa21.97■■□□□ 1.11
CLN3-204ENST00000357857 PCDHAC2Q9Y5I4 1007 aa21.97■■□□□ 1.11
CLN3-204ENST00000357857 IFIT3O14879 490 aaKnown RBP21.97■■□□□ 1.11
CLN3-204ENST00000357857 PRDM1O75626 825 aa21.97■■□□□ 1.11
CLN3-204ENST00000357857 SART3Q15020 963 aaKnown RBP21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms