RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 DGKZQ13574 1117 aa22.52■■□□□ 1.2
CLN3-202ENST00000355477 HSP90AB4PQ58FF6 505 aa22.52■■□□□ 1.2
CLN3-202ENST00000355477 OTUD5Q96G74 571 aa22.52■■□□□ 1.2
CLN3-202ENST00000355477 CFHR5Q9BXR6 569 aa22.52■■□□□ 1.2
CLN3-202ENST00000355477 PIH1D3Q9NQM4 214 aaKnown RBP22.52■■□□□ 1.2
CLN3-202ENST00000355477 ZNF112Q9UJU3 913 aa22.52■■□□□ 1.2
CLN3-202ENST00000355477 TESPA1A2RU30 521 aaPredicted RBP22.51■■□□□ 1.19
CLN3-202ENST00000355477 SPDYE5A6NIY4 337 aa22.51■■□□□ 1.19
CLN3-202ENST00000355477 PICALMQ13492 652 aa22.51■■□□□ 1.19
CLN3-202ENST00000355477 ZNF296Q8WUU4 475 aaPredicted RBP22.51■■□□□ 1.19
CLN3-202ENST00000355477 ATRNL1Q5VV63 1379 aa22.5■■□□□ 1.19
CLN3-202ENST00000355477 DDTLA6NHG4 134 aaPredicted RBP22.5■■□□□ 1.19
CLN3-202ENST00000355477 GPR25O00155 361 aa22.5■■□□□ 1.19
CLN3-202ENST00000355477 ALDH1A1P00352 501 aa22.5■■□□□ 1.19
CLN3-202ENST00000355477 SLURP2P0DP57 97 aa22.5■■□□□ 1.19
CLN3-202ENST00000355477 NDUFB9Q9Y6M9 179 aa22.5■■□□□ 1.19
CLN3-202ENST00000355477 NAA16Q6N069 864 aaPredicted RBP22.49■■□□□ 1.19
CLN3-202ENST00000355477 ADGRA1Q86SQ6 560 aa22.49■■□□□ 1.19
CLN3-202ENST00000355477 ERO1BQ86YB8 467 aa22.49■■□□□ 1.19
CLN3-202ENST00000355477 ZSCAN29Q8IWY8 852 aaPredicted RBP22.49■■□□□ 1.19
CLN3-202ENST00000355477 KIF1BPQ96EK5 621 aa22.49■■□□□ 1.19
CLN3-202ENST00000355477 FOCADQ5VW36 1801 aa22.48■■□□□ 1.19
CLN3-202ENST00000355477 NOM1Q5C9Z4 860 aaKnown RBP22.48■■□□□ 1.19
CLN3-202ENST00000355477 BRI3BPQ8WY22 251 aa22.48■■□□□ 1.19
CLN3-202ENST00000355477 YTHDC1Q96MU7 727 aaKnown RBP22.48■■□□□ 1.19
CLN3-202ENST00000355477 PHF20L1A8MW92 1017 aa22.47■■□□□ 1.19
CLN3-202ENST00000355477 GTF2A2P52657 109 aa22.47■■□□□ 1.19
CLN3-202ENST00000355477 SH3RF3Q8TEJ3 882 aaPredicted RBP22.47■■□□□ 1.19
CLN3-202ENST00000355477 BCL11AQ9H165 835 aa22.47■■□□□ 1.19
CLN3-202ENST00000355477 CCL15-CCL14A0A0B4J2E2 113 aa22.46■■□□□ 1.19
CLN3-202ENST00000355477 IRF6O14896 467 aa22.46■■□□□ 1.19
CLN3-202ENST00000355477 RAB11FIP3O75154 756 aa22.46■■□□□ 1.19
CLN3-202ENST00000355477 NPM3O75607 178 aaKnown RBP22.46■■□□□ 1.19
CLN3-202ENST00000355477 MAP4K4O95819 1239 aaPredicted RBP22.46■■□□□ 1.19
CLN3-202ENST00000355477 MAP3K10Q02779 954 aa22.46■■□□□ 1.19
CLN3-202ENST00000355477 PPIL2Q13356 520 aa22.46■■□□□ 1.19
CLN3-202ENST00000355477 CCL15Q16663 113 aa22.46■■□□□ 1.19
CLN3-202ENST00000355477 OTUD7BQ6GQQ9 843 aa22.46■■□□□ 1.19
CLN3-202ENST00000355477 CLASRPQ8N2M8 674 aaKnown RBP22.46■■□□□ 1.19
CLN3-202ENST00000355477 ANTXR1Q9H6X2 564 aa22.46■■□□□ 1.19
CLN3-202ENST00000355477 AATFQ9NY61 560 aaKnown RBP eCLIP22.46■■□□□ 1.19
CLN3-202ENST00000355477 CRHR2Q13324 411 aa22.45■■□□□ 1.18
CLN3-202ENST00000355477 CTU1Q7Z7A3 348 aaKnown RBP22.45■■□□□ 1.18
CLN3-202ENST00000355477 TEX11Q8IYF3 940 aa22.45■■□□□ 1.18
CLN3-202ENST00000355477 FKTNO75072 461 aa22.44■■□□□ 1.18
CLN3-202ENST00000355477 IDH1O75874 414 aaKnown RBP22.44■■□□□ 1.18
CLN3-202ENST00000355477 PPP4CP60510 307 aa22.44■■□□□ 1.18
CLN3-202ENST00000355477 PPATQ06203 517 aa22.44■■□□□ 1.18
CLN3-202ENST00000355477 DOCK1Q14185 1865 aa22.44■■□□□ 1.18
CLN3-202ENST00000355477 NOL9Q5SY16 702 aaKnown RBP22.44■■□□□ 1.18
CLN3-202ENST00000355477 PHIPQ8WWQ0 1821 aa22.44■■□□□ 1.18
CLN3-202ENST00000355477 SIPA1L1O43166 1804 aa22.43■■□□□ 1.18
CLN3-202ENST00000355477 BAG3O95817 575 aa22.43■■□□□ 1.18
CLN3-202ENST00000355477 FAM43AQ8N2R8 423 aa22.43■■□□□ 1.18
CLN3-202ENST00000355477 NOL10Q9BSC4 688 aaKnown RBP22.43■■□□□ 1.18
CLN3-202ENST00000355477 OSBPL5Q9H0X9 879 aaPredicted RBP22.43■■□□□ 1.18
CLN3-202ENST00000355477 CCDC85CA6NKD9 419 aa22.42■■□□□ 1.18
CLN3-202ENST00000355477 IFIT2P09913 472 aaKnown RBP22.42■■□□□ 1.18
CLN3-202ENST00000355477 CETPP11597 493 aa22.42■■□□□ 1.18
CLN3-202ENST00000355477 CYP7A1P22680 504 aa22.42■■□□□ 1.18
CLN3-202ENST00000355477 DYNLL1P63167 89 aaKnown RBP22.42■■□□□ 1.18
CLN3-202ENST00000355477 SNAPC2Q13487 334 aa22.42■■□□□ 1.18
CLN3-202ENST00000355477 ATAD5Q96QE3 1844 aa22.42■■□□□ 1.18
CLN3-202ENST00000355477 COL2A1P02458 1487 aaPredicted RBP22.41■■□□□ 1.18
CLN3-202ENST00000355477 PTPRFP10586 1907 aa22.41■■□□□ 1.18
CLN3-202ENST00000355477 MYH1P12882 1939 aa22.41■■□□□ 1.18
CLN3-202ENST00000355477 FAM196BA6NMK8 535 aa22.41■■□□□ 1.18
CLN3-202ENST00000355477 IGSF3O75054 1194 aa22.41■■□□□ 1.18
CLN3-202ENST00000355477 MAGEB6Q8N7X4 407 aa22.41■■□□□ 1.18
CLN3-202ENST00000355477 BTBD19C9JJ37 291 aa22.4■■□□□ 1.18
CLN3-202ENST00000355477 TBC1D12O60347 775 aa22.4■■□□□ 1.18
CLN3-202ENST00000355477 PLCG2P16885 1265 aa22.4■■□□□ 1.18
CLN3-202ENST00000355477 RRP1P56182 461 aaKnown RBP22.4■■□□□ 1.18
CLN3-202ENST00000355477 SCYL3Q8IZE3 742 aa22.4■■□□□ 1.18
CLN3-202ENST00000355477 TGFBRAP1Q8WUH2 860 aa22.4■■□□□ 1.18
CLN3-202ENST00000355477 KCNH4Q9UQ05 1017 aa22.4■■□□□ 1.18
CLN3-202ENST00000355477 SMARCA5O60264 1052 aaPredicted RBP22.39■■□□□ 1.17
CLN3-202ENST00000355477 TAF1CQ15572 869 aaPredicted RBP22.39■■□□□ 1.17
CLN3-202ENST00000355477 MAPKAPK5Q8IW41 473 aa22.39■■□□□ 1.17
CLN3-202ENST00000355477 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.39■■□□□ 1.17
CLN3-202ENST00000355477 CTNND1O60716 968 aaKnown RBP22.38■■□□□ 1.17
CLN3-202ENST00000355477 PTPRAP18433 802 aa22.38■■□□□ 1.17
CLN3-202ENST00000355477 MAP3K12Q12852 859 aa22.38■■□□□ 1.17
CLN3-202ENST00000355477 MOGSQ13724 837 aa22.38■■□□□ 1.17
CLN3-202ENST00000355477 MIGA1Q8NAN2 632 aa22.38■■□□□ 1.17
CLN3-202ENST00000355477 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.38■■□□□ 1.17
CLN3-202ENST00000355477 LRRCC1Q9C099 1032 aa22.38■■□□□ 1.17
CLN3-202ENST00000355477 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.38■■□□□ 1.17
CLN3-202ENST00000355477 FLT1P17948 1338 aa22.37■■□□□ 1.17
CLN3-202ENST00000355477 EDC3Q96F86 508 aaKnown RBP22.37■■□□□ 1.17
CLN3-202ENST00000355477 DNAJC2Q99543 621 aaKnown RBP22.37■■□□□ 1.17
CLN3-202ENST00000355477 DCTPP1Q9H773 170 aa22.37■■□□□ 1.17
CLN3-202ENST00000355477 ZFYVE28Q9HCC9 887 aa22.37■■□□□ 1.17
CLN3-202ENST00000355477 PICK1Q9NRD5 415 aa22.37■■□□□ 1.17
CLN3-202ENST00000355477 PCDHB15Q9Y5E8 787 aa22.37■■□□□ 1.17
CLN3-202ENST00000355477 ZHX2Q9Y6X8 837 aa22.37■■□□□ 1.17
CLN3-202ENST00000355477 MYH7P12883 1935 aa22.36■■□□□ 1.17
CLN3-202ENST00000355477 GOLIM4O00461 696 aa22.36■■□□□ 1.17
CLN3-202ENST00000355477 CAP1Q01518 475 aa22.36■■□□□ 1.17
CLN3-202ENST00000355477 RRP1BQ14684 758 aaKnown RBP22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms