RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 SMARCC2Q8TAQ2 1214 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 PSMB7Q99436 277 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 JADE2Q9NQC1 790 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 GNL3LQ9NVN8 582 aaKnown RBP11.55□□□□□ -0.56
CLDN1-201ENST00000295522 ADGRB3O60242 1522 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 SKAP2O75563 359 aaPredicted RBP11.55□□□□□ -0.56
CLDN1-201ENST00000295522 RPS6KA5O75582 802 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 PAX7P23759 505 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 PDIA3P30101 505 aaKnown RBP11.55□□□□□ -0.56
CLDN1-201ENST00000295522 AFMP43652 599 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 DNA2P51530 1060 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 NEDD9Q14511 834 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 FILIP1LQ4L180 1135 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 BEND3Q5T5X7 828 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 HSD3B7Q9H2F3 369 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 TFR2Q9UP52 801 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 ACEP12821 1306 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 TRDNQ13061 729 aa11.54□□□□□ -0.56
CLDN1-201ENST00000295522 WASHC4Q2M389 1173 aa11.54□□□□□ -0.56
CLDN1-201ENST00000295522 MCMDC2Q4G0Z9 681 aa11.54□□□□□ -0.56
CLDN1-201ENST00000295522 NAIF1Q69YI7 327 aaPredicted RBP11.54□□□□□ -0.56
CLDN1-201ENST00000295522 ATL3Q6DD88 541 aa11.54□□□□□ -0.56
CLDN1-201ENST00000295522 CCDC70Q6NSX1 233 aa11.54□□□□□ -0.56
CLDN1-201ENST00000295522 GPIHBP1Q8IV16 184 aa11.54□□□□□ -0.56
CLDN1-201ENST00000295522 TRIM10Q9UDY6 481 aa11.54□□□□□ -0.56
CLDN1-201ENST00000295522 KIF28PB7ZC32 967 aa11.54□□□□□ -0.56
CLDN1-201ENST00000295522 SYF2O95926 243 aaKnown RBP11.54□□□□□ -0.56
CLDN1-201ENST00000295522 CMA1P23946 247 aa11.54□□□□□ -0.56
CLDN1-201ENST00000295522 GBP2P32456 591 aaPredicted RBP11.54□□□□□ -0.56
CLDN1-201ENST00000295522 FMR1Q06787 632 aaKnown RBP eCLIP11.54□□□□□ -0.56
CLDN1-201ENST00000295522 CEP85LQ5SZL2 805 aa11.54□□□□□ -0.56
CLDN1-201ENST00000295522 RBM33Q96EV2 1170 aaKnown RBP11.54□□□□□ -0.56
CLDN1-201ENST00000295522 EYA1Q99502 592 aa11.54□□□□□ -0.56
CLDN1-201ENST00000295522 C19orf44Q9H6X5 657 aa11.54□□□□□ -0.56
CLDN1-201ENST00000295522 KCNH3Q9ULD8 1083 aa11.54□□□□□ -0.56
CLDN1-201ENST00000295522 ZC3H13Q5T200 1668 aaKnown RBP11.54□□□□□ -0.56
CLDN1-201ENST00000295522 CRB1P82279 1406 aa11.54□□□□□ -0.56
CLDN1-201ENST00000295522 KCNQ3O43525 872 aa11.54□□□□□ -0.56
CLDN1-201ENST00000295522 YEATS4O95619 227 aa11.54□□□□□ -0.56
CLDN1-201ENST00000295522 ELF1P32519 619 aa11.54□□□□□ -0.56
CLDN1-201ENST00000295522 TRIM29Q14134 588 aa11.54□□□□□ -0.56
CLDN1-201ENST00000295522 MSANTD4Q8NCY6 345 aa11.54□□□□□ -0.56
CLDN1-201ENST00000295522 RAB21Q9UL25 225 aa11.54□□□□□ -0.56
CLDN1-201ENST00000295522 HPCAL4Q9UM19 191 aa11.54□□□□□ -0.56
CLDN1-201ENST00000295522 CDC25AP30304 524 aa11.53□□□□□ -0.56
CLDN1-201ENST00000295522 GSCP56915 257 aaPredicted RBP11.53□□□□□ -0.56
CLDN1-201ENST00000295522 RALYLQ86SE5 291 aaKnown RBP11.53□□□□□ -0.56
CLDN1-201ENST00000295522 PRPF38AQ8NAV1 312 aaKnown RBP11.53□□□□□ -0.56
CLDN1-201ENST00000295522 ADGRL3Q9HAR2 1447 aa11.53□□□□□ -0.56
CLDN1-201ENST00000295522 POLR2DO15514 142 aaKnown RBP11.53□□□□□ -0.56
CLDN1-201ENST00000295522 ALDH1L1O75891 902 aa11.53□□□□□ -0.56
CLDN1-201ENST00000295522 HMGB1P09429 215 aaKnown RBP11.53□□□□□ -0.56
CLDN1-201ENST00000295522 SARNPP82979 210 aaKnown RBP11.53□□□□□ -0.56
CLDN1-201ENST00000295522 KIAA1328Q86T90 577 aa11.53□□□□□ -0.56
CLDN1-201ENST00000295522 IL17REQ8NFR9 667 aa11.53□□□□□ -0.56
CLDN1-201ENST00000295522 SUCLG2Q96I99 432 aa11.53□□□□□ -0.56
CLDN1-201ENST00000295522 CCDC114Q96M63 670 aa11.53□□□□□ -0.56
CLDN1-201ENST00000295522 CDHR2Q9BYE9 1310 aa11.53□□□□□ -0.56
CLDN1-201ENST00000295522 USP5P45974 858 aa11.52□□□□□ -0.56
CLDN1-201ENST00000295522 WHAMMP3Q1A5X7 153 aa11.52□□□□□ -0.56
CLDN1-201ENST00000295522 NUTM2AQ8IVF1 878 aaPredicted RBP11.52□□□□□ -0.56
CLDN1-201ENST00000295522 SMYD4Q8IYR2 804 aaPredicted RBP11.52□□□□□ -0.56
CLDN1-201ENST00000295522 SH2D3CQ8N5H7 860 aa11.52□□□□□ -0.56
CLDN1-201ENST00000295522 SELENOOQ9BVL4 669 aa11.52□□□□□ -0.56
CLDN1-201ENST00000295522 CARD10Q9BWT7 1032 aa11.52□□□□□ -0.56
CLDN1-201ENST00000295522 VPS16Q9H269 839 aa11.52□□□□□ -0.56
CLDN1-201ENST00000295522 NPHP4O75161 1426 aaPredicted RBP11.52□□□□□ -0.56
CLDN1-201ENST00000295522 N4BP3O15049 544 aa11.52□□□□□ -0.57
CLDN1-201ENST00000295522 IFT88Q13099 833 aa11.52□□□□□ -0.57
CLDN1-201ENST00000295522 TSR1Q2NL82 804 aaKnown RBP11.52□□□□□ -0.57
CLDN1-201ENST00000295522 RIC3Q7Z5B4 369 aa11.52□□□□□ -0.57
CLDN1-201ENST00000295522 DLG5Q8TDM6 1919 aa11.52□□□□□ -0.57
CLDN1-201ENST00000295522 E7EWF7 191 aa11.52□□□□□ -0.57
CLDN1-201ENST00000295522 CPP00450 1065 aa11.52□□□□□ -0.57
CLDN1-201ENST00000295522 FDPSP14324 419 aaKnown RBP11.52□□□□□ -0.57
CLDN1-201ENST00000295522 COG1Q8WTW3 980 aa11.52□□□□□ -0.57
CLDN1-201ENST00000295522 PHKBQ93100 1093 aa11.52□□□□□ -0.57
CLDN1-201ENST00000295522 ALG1Q9BT22 464 aa11.52□□□□□ -0.57
CLDN1-201ENST00000295522 POLR3EQ9NVU0 708 aa11.52□□□□□ -0.57
CLDN1-201ENST00000295522 CALRP27797 417 aaKnown RBP11.51□□□□□ -0.57
CLDN1-201ENST00000295522 SHC4Q6S5L8 630 aa11.51□□□□□ -0.57
CLDN1-201ENST00000295522 METTL16Q86W50 562 aaKnown RBP11.51□□□□□ -0.57
CLDN1-201ENST00000295522 MICU3Q86XE3 530 aa11.51□□□□□ -0.57
CLDN1-201ENST00000295522 STAMQ92783 540 aa11.51□□□□□ -0.57
CLDN1-201ENST00000295522 AIDAQ96BJ3 306 aa11.51□□□□□ -0.57
CLDN1-201ENST00000295522 MMS19Q96T76 1030 aa11.51□□□□□ -0.57
CLDN1-201ENST00000295522 DBNDD2Q9BQY9 259 aa11.51□□□□□ -0.57
CLDN1-201ENST00000295522 TEX13AQ9BXU3 409 aaPredicted RBP11.51□□□□□ -0.57
CLDN1-201ENST00000295522 DACH1Q9UI36 760 aa11.51□□□□□ -0.57
CLDN1-201ENST00000295522 GOLGA6L7A0A1B0GV03 622 aa11.51□□□□□ -0.57
CLDN1-201ENST00000295522 PPP1R12BO60237 982 aaPredicted RBP11.51□□□□□ -0.57
CLDN1-201ENST00000295522 MYL6BP14649 208 aa11.51□□□□□ -0.57
CLDN1-201ENST00000295522 CASP1P29466 404 aa11.51□□□□□ -0.57
CLDN1-201ENST00000295522 C2orf54Q08AI8 447 aa11.51□□□□□ -0.57
CLDN1-201ENST00000295522 PPFIA1Q13136 1202 aa11.51□□□□□ -0.57
CLDN1-201ENST00000295522 TTC39AQ5SRH9 613 aa11.51□□□□□ -0.57
CLDN1-201ENST00000295522 NFXL1Q6ZNB6 911 aa11.51□□□□□ -0.57
CLDN1-201ENST00000295522 IQCA1Q86XH1 822 aa11.51□□□□□ -0.57
CLDN1-201ENST00000295522 PCMTD1Q96MG8 357 aaPredicted RBP11.51□□□□□ -0.57
CLDN1-201ENST00000295522 MACROD2A1Z1Q3 448 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms