RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 SLX4Q8IY92 1834 aa17.47■□□□□ 0.39
CCDC47-201ENST00000225726 SBK1Q52WX2 424 aa17.47■□□□□ 0.39
CCDC47-201ENST00000225726 SGMS1Q86VZ5 419 aa17.47■□□□□ 0.39
CCDC47-201ENST00000225726 TOMM22Q9NS69 142 aa17.47■□□□□ 0.39
CCDC47-201ENST00000225726 ARPP21Q9UBL0 812 aaPredicted RBP17.47■□□□□ 0.39
CCDC47-201ENST00000225726 PRPF40AO75400 957 aaKnown RBP17.46■□□□□ 0.39
CCDC47-201ENST00000225726 RRP12Q5JTH9 1297 aaKnown RBP17.46■□□□□ 0.39
CCDC47-201ENST00000225726 MFSD14BQ5SR56 506 aa17.46■□□□□ 0.39
CCDC47-201ENST00000225726 SLF2Q8IX21 1173 aa17.46■□□□□ 0.39
CCDC47-201ENST00000225726 C10orf71Q711Q0 1435 aa17.46■□□□□ 0.39
CCDC47-201ENST00000225726 IFIT3O14879 490 aaKnown RBP17.46■□□□□ 0.39
CCDC47-201ENST00000225726 SART3Q15020 963 aaKnown RBP17.46■□□□□ 0.39
CCDC47-201ENST00000225726 DIXDC1Q155Q3 683 aa17.46■□□□□ 0.39
CCDC47-201ENST00000225726 KLHL40Q2TBA0 621 aa17.46■□□□□ 0.39
CCDC47-201ENST00000225726 DDX11Q96FC9 970 aa17.46■□□□□ 0.39
CCDC47-201ENST00000225726 DLEC1Q9Y238 1755 aa17.46■□□□□ 0.39
CCDC47-201ENST00000225726 FGRP09769 529 aa17.46■□□□□ 0.39
CCDC47-201ENST00000225726 CDC37L1Q7L3B6 337 aa17.46■□□□□ 0.39
CCDC47-201ENST00000225726 USP17L12C9JPN9 530 aa17.45■□□□□ 0.38
CCDC47-201ENST00000225726 USP17L21D6R901 530 aa17.45■□□□□ 0.38
CCDC47-201ENST00000225726 ESR2Q92731 530 aa17.45■□□□□ 0.38
CCDC47-201ENST00000225726 RTFDC1Q9BY42 306 aaPredicted RBP17.45■□□□□ 0.38
CCDC47-201ENST00000225726 SUGT1Q9Y2Z0 365 aa17.45■□□□□ 0.38
CCDC47-201ENST00000225726 DDX49Q9Y6V7 483 aaKnown RBP17.45■□□□□ 0.38
CCDC47-201ENST00000225726 NAV1Q8NEY1 1877 aa17.45■□□□□ 0.38
CCDC47-201ENST00000225726 CHRNA5P30532 468 aa17.45■□□□□ 0.38
CCDC47-201ENST00000225726 SLC16A10Q8TF71 515 aa17.45■□□□□ 0.38
CCDC47-201ENST00000225726 APOA5Q6Q788 366 aa17.45■□□□□ 0.38
CCDC47-201ENST00000225726 NFXL1Q6ZNB6 911 aa17.45■□□□□ 0.38
CCDC47-201ENST00000225726 SH3RF3Q8TEJ3 882 aaPredicted RBP17.45■□□□□ 0.38
CCDC47-201ENST00000225726 FAM163AQ96GL9 167 aaPredicted RBP17.45■□□□□ 0.38
CCDC47-201ENST00000225726 CYP2D7A0A087X1C5 515 aa17.44■□□□□ 0.38
CCDC47-201ENST00000225726 GTF2IP78347 998 aa17.44■□□□□ 0.38
CCDC47-201ENST00000225726 TMEM87AQ8NBN3 555 aa17.44■□□□□ 0.38
CCDC47-201ENST00000225726 SLC3A2P08195 630 aaKnown RBP17.44■□□□□ 0.38
CCDC47-201ENST00000225726 STK11IPQ8N1F8 1099 aa17.44■□□□□ 0.38
CCDC47-201ENST00000225726 GPR75-ASB3A0A0A6YYF3 556 aa17.44■□□□□ 0.38
CCDC47-201ENST00000225726 ERICH2A1L162 156 aa17.44■□□□□ 0.38
CCDC47-201ENST00000225726 USP5P45974 858 aa17.44■□□□□ 0.38
CCDC47-201ENST00000225726 METAP2P50579 478 aaKnown RBP eCLIP17.44■□□□□ 0.38
CCDC47-201ENST00000225726 FOXD4L6Q3SYB3 417 aaPredicted RBP17.44■□□□□ 0.38
CCDC47-201ENST00000225726 FOXD4L3Q6VB84 417 aaPredicted RBP17.44■□□□□ 0.38
CCDC47-201ENST00000225726 CCDC125Q86Z20 511 aa17.44■□□□□ 0.38
CCDC47-201ENST00000225726 PDGFDQ9GZP0 370 aaPredicted RBP17.44■□□□□ 0.38
CCDC47-201ENST00000225726 MKRN1Q9UHC7 482 aaKnown RBP17.44■□□□□ 0.38
CCDC47-201ENST00000225726 NID2Q14112 1375 aa17.43■□□□□ 0.38
CCDC47-201ENST00000225726 CCDC69A6NI79 296 aa17.43■□□□□ 0.38
CCDC47-201ENST00000225726 TMTC2Q8N394 836 aa17.43■□□□□ 0.38
CCDC47-201ENST00000225726 SENP2Q9HC62 589 aa17.43■□□□□ 0.38
CCDC47-201ENST00000225726 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.43■□□□□ 0.38
CCDC47-201ENST00000225726 GAKO14976 1311 aa17.43■□□□□ 0.38
CCDC47-201ENST00000225726 CDK5RAP2Q96SN8 1893 aa17.43■□□□□ 0.38
CCDC47-201ENST00000225726 H3BQV1 296 aa17.43■□□□□ 0.38
CCDC47-201ENST00000225726 ZBTB43O43298 467 aa17.43■□□□□ 0.38
CCDC47-201ENST00000225726 ORC4O43929 436 aa17.43■□□□□ 0.38
CCDC47-201ENST00000225726 PLCG2P16885 1265 aa17.43■□□□□ 0.38
CCDC47-201ENST00000225726 BTDP43251 543 aa17.43■□□□□ 0.38
CCDC47-201ENST00000225726 WTAPQ15007 396 aa17.43■□□□□ 0.38
CCDC47-201ENST00000225726 IFFO2Q5TF58 517 aa17.43■□□□□ 0.38
CCDC47-201ENST00000225726 CPLX1O14810 134 aa17.42■□□□□ 0.38
CCDC47-201ENST00000225726 G3V3G9 751 aa17.42■□□□□ 0.38
CCDC47-201ENST00000225726 DOK7Q18PE1 504 aa17.42■□□□□ 0.38
CCDC47-201ENST00000225726 DCAF8Q5TAQ9 597 aa17.42■□□□□ 0.38
CCDC47-201ENST00000225726 UBAC1Q9BSL1 405 aa17.42■□□□□ 0.38
CCDC47-201ENST00000225726 GZF1Q9H116 711 aaPredicted RBP17.42■□□□□ 0.38
CCDC47-201ENST00000225726 SLC12A7Q9Y666 1083 aa17.42■□□□□ 0.38
CCDC47-201ENST00000225726 TCHHQ07283 1943 aa17.42■□□□□ 0.38
CCDC47-201ENST00000225726 SMIM22K7EJ46 135 aa17.42■□□□□ 0.38
CCDC47-201ENST00000225726 CC2D2BQ6DHV5 1058 aa17.42■□□□□ 0.38
CCDC47-201ENST00000225726 C7orf43Q8WVR3 580 aa17.42■□□□□ 0.38
CCDC47-201ENST00000225726 MCM9Q9NXL9 1143 aa17.42■□□□□ 0.38
CCDC47-201ENST00000225726 CNPY2Q9Y2B0 182 aa17.42■□□□□ 0.38
CCDC47-201ENST00000225726 SYNE3Q6ZMZ3 975 aa17.41■□□□□ 0.38
CCDC47-201ENST00000225726 RAB11FIP4Q86YS3 637 aa17.41■□□□□ 0.38
CCDC47-201ENST00000225726 DDX60LQ5H9U9 1706 aaKnown RBP17.41■□□□□ 0.38
CCDC47-201ENST00000225726 GOLGA8AA7E2F4 631 aa17.41■□□□□ 0.38
CCDC47-201ENST00000225726 CDKL5O76039 1030 aa17.41■□□□□ 0.38
CCDC47-201ENST00000225726 NT5C2P49902 561 aa17.41■□□□□ 0.38
CCDC47-201ENST00000225726 RCAN1P53805 252 aa17.41■□□□□ 0.38
CCDC47-201ENST00000225726 CSPP1Q1MSJ5 1256 aa17.41■□□□□ 0.38
CCDC47-201ENST00000225726 USP48Q86UV5 1035 aa17.41■□□□□ 0.38
CCDC47-201ENST00000225726 FBXW7Q969H0 707 aa17.41■□□□□ 0.38
CCDC47-201ENST00000225726 MBD3O95983 291 aa17.41■□□□□ 0.38
CCDC47-201ENST00000225726 CYP2D6P10635 497 aa17.41■□□□□ 0.38
CCDC47-201ENST00000225726 FDPSP14324 419 aaKnown RBP17.41■□□□□ 0.38
CCDC47-201ENST00000225726 AMOTL1Q8IY63 956 aa17.41■□□□□ 0.38
CCDC47-201ENST00000225726 ZKSCAN3Q9BRR0 538 aa17.41■□□□□ 0.38
CCDC47-201ENST00000225726 ROBO3Q96MS0 1386 aa17.41■□□□□ 0.38
CCDC47-201ENST00000225726 SNED1Q8TER0 1413 aa17.41■□□□□ 0.38
CCDC47-201ENST00000225726 C12orf60Q5U649 245 aa17.4■□□□□ 0.38
CCDC47-201ENST00000225726 CPLX2Q6PUV4 134 aaKnown RBP17.4■□□□□ 0.38
CCDC47-201ENST00000225726 PODNQ7Z5L7 613 aa17.4■□□□□ 0.38
CCDC47-201ENST00000225726 MICU3Q86XE3 530 aa17.4■□□□□ 0.38
CCDC47-201ENST00000225726 ZSCAN16Q9H4T2 348 aaPredicted RBP17.4■□□□□ 0.38
CCDC47-201ENST00000225726 FOCADQ5VW36 1801 aa17.4■□□□□ 0.38
CCDC47-201ENST00000225726 USP17L8P0C7I0 530 aa17.4■□□□□ 0.38
CCDC47-201ENST00000225726 DNM1Q05193 864 aaKnown RBP17.4■□□□□ 0.38
CCDC47-201ENST00000225726 PDE4BQ07343 736 aa17.4■□□□□ 0.38
CCDC47-201ENST00000225726 RESTQ13127 1097 aa17.4■□□□□ 0.38
CCDC47-201ENST00000225726 SEC23AQ15436 765 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms