RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 USMG5Q96IX5 58 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 MGST2Q99735 147 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 HOPXQ9BPY8 73 aaPredicted RBP0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 TXNDC17Q9BRA2 123 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 C9orf16Q9BUW7 83 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 SMIM3Q9BZL3 60 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 C6orf62Q9GZU0 229 aaPredicted RBP0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 ARL6Q9H0F7 186 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 MIXL1Q9H2W2 232 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 SPACA1Q9HBV2 294 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 ACOT13Q9NPJ3 140 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 DIABLOQ9NR28 239 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 BATF3Q9NR55 127 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 TUBG2Q9NRH3 451 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 NDUFA4L2Q9NRX3 87 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 FKBP14Q9NWM8 211 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 TXNL4BQ9NX01 149 aaKnown RBP0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 NDUFB11Q9NX14 153 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 COMMD9Q9P000 198 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 COMMD3Q9UBI1 195 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 CKLFQ9UBR5 152 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 PRELID3BQ9Y3B1 194 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 AP4S1Q9Y587 144 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 LY96Q9Y6Y9 160 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 GPR98Q8WXG9 6306 aa0.42□□□□□ -2.34
SMARCB1-209ENST00000635578 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 TRAV8-3A0A0A6YYJ7 113 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 TRBV7-1A0A0A6YYK4 115 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 C3orf85A0A1B0GTC6 90 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 ANKRD20A5PA0PJZ0 165 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 C7orf71A4D174 169 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 A8MTW9 85 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 SMLR1H3BR10 107 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 M0R381 172 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 CORTO00230 105 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 ITGB1BP1O14713 200 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 GNRH2O43555 120 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 CREBL2O60519 120 aaPredicted RBP0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 SPINK4O60575 86 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 SH2D1AO60880 128 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 PGLYRP1O75594 196 aaPredicted RBP0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 SNAPC5O75971 98 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 CST7O76096 145 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 TNFAIP8O95379 198 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 SIX6O95475 246 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 NCR2O95944 276 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 DHFRP00374 187 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 IFNA5P01569 189 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 CRPP02741 224 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 STAG3L2P0CL84 134 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 IGLC2P0DOY2 106 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 HIST1H1BP16401 226 aaKnown RBP0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 AKR1C4P17516 323 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 M6PRP20645 277 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 FGF7P21781 194 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 CRYBB3P26998 211 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 RNASE4P34096 147 aaKnown RBP0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 RCVRNP35243 200 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 RANBP1P43487 201 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 UBE2G2P60604 165 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 RAB2AP61019 212 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 PRLHP81277 87 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 BAXQ07812 192 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 MLLT11Q13015 90 aaPredicted RBP0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 ZNF846Q147U1 533 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 SPCS2Q15005 226 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 SURF2Q15527 256 aaPredicted RBP0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 ZNF56Q15929 161 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 BSXQ3C1V8 233 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 RNASE10Q5GAN6 216 aaKnown RBP0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 SPANXN5Q5MJ07 72 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 EBLN2Q6P2I7 272 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 LYPD5Q6UWN5 251 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 CYP2G1PQ6ZSU1 146 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 Q6ZUT4 128 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 GOLT1AQ6ZVE7 132 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 CROCCP2Q86T23 111 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 LHFPL1Q86WI0 220 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 CLVS1Q8IUQ0 354 aaPredicted RBP0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 IQCF2Q8IXL9 164 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 SELENOHQ8IZQ5 122 aaKnown RBP0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 OR8I2Q8N0Y5 310 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 LINC00337Q8N6G1 96 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 GATD1Q8NB37 220 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 OR2T35Q8NGX2 323 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 OR4X1Q8NH49 305 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 MCFD2Q8NI22 146 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 VSTM2AQ8TAG5 236 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 SPACA4Q8TDM5 124 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 DTD1Q8TEA8 209 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 Q8WTZ3 238 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 DGCR14Q96DF8 476 aaKnown RBP0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 HYLS1Q96M11 299 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 TMEM56Q96MV1 263 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 CIB3Q96Q77 187 aaPredicted RBP0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 MGLLQ99685 303 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 UPK3BQ9BT76 320 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 PDCD10Q9BUL8 212 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 TMEM147Q9BVK8 224 aa0.41□□□□□ -2.34
SMARCB1-209ENST00000635578 ZNF471Q9BX82 626 aaPredicted RBP0.41□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 230 ms