RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 TEX46H3BTG2 121 aa10.84□□□□□ -0.67
CLK3-227ENST00000570296 GCHFRP30047 84 aa10.84□□□□□ -0.67
CLK3-227ENST00000570296 MAP1LC3BQ9GZQ8 125 aa10.84□□□□□ -0.67
CLK3-227ENST00000570296 H2AFB1P0C5Y9 115 aa10.83□□□□□ -0.68
CLK3-227ENST00000570296 UBE2D1P51668 147 aa10.83□□□□□ -0.68
CLK3-227ENST00000570296 ZNF726P1Q15940 193 aa10.83□□□□□ -0.68
CLK3-227ENST00000570296 SFT2D1Q8WV19 159 aa10.83□□□□□ -0.68
CLK3-227ENST00000570296 ARL2-SNX15V9GYD0 113 aa10.83□□□□□ -0.68
CLK3-227ENST00000570296 IGLV7-43P04211 117 aa10.82□□□□□ -0.68
CLK3-227ENST00000570296 KRTAP1-4P0C5Y4 121 aa10.82□□□□□ -0.68
CLK3-227ENST00000570296 FHITP49789 147 aa10.82□□□□□ -0.68
CLK3-227ENST00000570296 PTTG1IPP53801 180 aa10.82□□□□□ -0.68
CLK3-227ENST00000570296 ALKAL2Q6UX46 152 aa10.81□□□□□ -0.68
CLK3-227ENST00000570296 MBD3L1Q8WWY6 194 aa10.81□□□□□ -0.68
CLK3-227ENST00000570296 CARD19Q96LW7 228 aa10.81□□□□□ -0.68
CLK3-227ENST00000570296 TMEM243Q9BU79 118 aa10.81□□□□□ -0.68
CLK3-227ENST00000570296 AMTP48728 403 aa10.8□□□□□ -0.68
CLK3-227ENST00000570296 CRIP1P50238 77 aa10.8□□□□□ -0.68
CLK3-227ENST00000570296 SUMO1P63165 101 aaKnown RBP10.8□□□□□ -0.68
CLK3-227ENST00000570296 A0A1W2PNN7 141 aa10.79□□□□□ -0.68
CLK3-227ENST00000570296 F5H697 171 aa10.79□□□□□ -0.68
CLK3-227ENST00000570296 SH2D1AO60880 128 aa10.79□□□□□ -0.68
CLK3-227ENST00000570296 BLOC1S1P78537 153 aa10.79□□□□□ -0.68
CLK3-227ENST00000570296 TRAV34A0A0B4J273 112 aa10.78□□□□□ -0.68
CLK3-227ENST00000570296 A0A1B0GV50 99 aa10.78□□□□□ -0.68
CLK3-227ENST00000570296 A0A1W2PRE2 83 aa10.78□□□□□ -0.68
CLK3-227ENST00000570296 LINC01559Q495D7 138 aa10.78□□□□□ -0.68
CLK3-227ENST00000570296 FAM162BQ5T6X4 162 aa10.78□□□□□ -0.68
CLK3-227ENST00000570296 CHCHD10Q8WYQ3 142 aaPredicted RBP10.78□□□□□ -0.68
CLK3-227ENST00000570296 NKX6-2Q9C056 277 aaPredicted RBP10.78□□□□□ -0.68
CLK3-227ENST00000570296 TMSB15BA0A087X1C1 80 aa10.77□□□□□ -0.69
CLK3-227ENST00000570296 LINC01547P58512 204 aaPredicted RBP10.77□□□□□ -0.69
CLK3-227ENST00000570296 UBE2G2P60604 165 aa10.77□□□□□ -0.69
CLK3-227ENST00000570296 COX8CQ7Z4L0 72 aa10.77□□□□□ -0.69
CLK3-227ENST00000570296 Q86TA4 180 aa10.77□□□□□ -0.69
CLK3-227ENST00000570296 LOC107984640A0A0U1RRK4 108 aa10.75□□□□□ -0.69
CLK3-227ENST00000570296 TSPAN13O95857 204 aa10.75□□□□□ -0.69
CLK3-227ENST00000570296 IFNA1P01562 189 aa10.75□□□□□ -0.69
CLK3-227ENST00000570296 GAGE2BQ13066 116 aa10.75□□□□□ -0.69
CLK3-227ENST00000570296 ZNF674Q2M3X9 581 aa10.75□□□□□ -0.69
CLK3-227ENST00000570296 CST9LP1Q5W188 147 aa10.75□□□□□ -0.69
CLK3-227ENST00000570296 TEX261Q6UWH6 196 aa10.75□□□□□ -0.69
CLK3-227ENST00000570296 IGKV3OR2-268A0A0C4DH90 116 aa10.74□□□□□ -0.69
CLK3-227ENST00000570296 FAM74A7A6NL05 159 aa10.74□□□□□ -0.69
CLK3-227ENST00000570296 UBE2L6O14933 153 aa10.74□□□□□ -0.69
CLK3-227ENST00000570296 OR10AG1Q8NH19 301 aa10.74□□□□□ -0.69
CLK3-227ENST00000570296 MANBALQ9NQG1 85 aa10.74□□□□□ -0.69
CLK3-227ENST00000570296 GNG13Q9P2W3 67 aa10.74□□□□□ -0.69
CLK3-227ENST00000570296 CARHSP1Q9Y2V2 147 aaKnown RBP10.74□□□□□ -0.69
CLK3-227ENST00000570296 PAGE4O60829 102 aa10.73□□□□□ -0.69
CLK3-227ENST00000570296 SYCNQ0VAF6 134 aa10.73□□□□□ -0.69
CLK3-227ENST00000570296 FOXI1Q12951 378 aa10.73□□□□□ -0.69
CLK3-227ENST00000570296 C9orf116Q5BN46 136 aaPredicted RBP10.73□□□□□ -0.69
CLK3-227ENST00000570296 IGHV1-58A0A0C4DH39 117 aa10.72□□□□□ -0.69
CLK3-227ENST00000570296 SRSF3P84103 164 aaKnown RBP10.72□□□□□ -0.69
CLK3-227ENST00000570296 PHF5AQ7RTV0 110 aaKnown RBP10.72□□□□□ -0.69
CLK3-227ENST00000570296 LINC00526Q96FQ7 95 aa10.72□□□□□ -0.69
CLK3-227ENST00000570296 TCEAL7Q9BRU2 100 aa10.72□□□□□ -0.69
CLK3-227ENST00000570296 CDIP1Q9H305 208 aa10.72□□□□□ -0.69
CLK3-227ENST00000570296 ZFP30Q9Y2G7 519 aa10.72□□□□□ -0.69
CLK3-227ENST00000570296 TAGLN2P37802 199 aaKnown RBP10.71□□□□□ -0.69
CLK3-227ENST00000570296 HIST1H2BAQ96A08 127 aa10.71□□□□□ -0.69
CLK3-227ENST00000570296 PGLYRP4Q96LB8 373 aa10.71□□□□□ -0.69
CLK3-227ENST00000570296 SMIM17P0DL12 118 aa10.7□□□□□ -0.7
CLK3-227ENST00000570296 FGF6P10767 208 aa10.7□□□□□ -0.7
CLK3-227ENST00000570296 CCL20P78556 96 aa10.7□□□□□ -0.7
CLK3-227ENST00000570296 MLST8Q9BVC4 326 aa10.7□□□□□ -0.7
CLK3-227ENST00000570296 M0QY20 66 aa10.69□□□□□ -0.7
CLK3-227ENST00000570296 PEX7O00628 323 aa10.69□□□□□ -0.7
CLK3-227ENST00000570296 RAB14P61106 215 aa10.69□□□□□ -0.7
CLK3-227ENST00000570296 A0A087WZ39 114 aa10.68□□□□□ -0.7
CLK3-227ENST00000570296 TPRXLQ17RH7 258 aa10.68□□□□□ -0.7
CLK3-227ENST00000570296 SPANXN1Q5VSR9 72 aa10.68□□□□□ -0.7
CLK3-227ENST00000570296 ISOC2Q96AB3 205 aa10.68□□□□□ -0.7
CLK3-227ENST00000570296 ZNF561-AS1K7EIQ3 104 aa10.67□□□□□ -0.7
CLK3-227ENST00000570296 SNAI2O43623 268 aa10.67□□□□□ -0.7
CLK3-227ENST00000570296 CXCL1P09341 107 aa10.67□□□□□ -0.7
CLK3-227ENST00000570296 BCL2P10415 239 aa10.67□□□□□ -0.7
CLK3-227ENST00000570296 AKR1C3P42330 323 aa10.67□□□□□ -0.7
CLK3-227ENST00000570296 UBE2G1P62253 170 aa10.67□□□□□ -0.7
CLK3-227ENST00000570296 TSKUQ8WUA8 353 aa10.67□□□□□ -0.7
CLK3-227ENST00000570296 AP1S3Q96PC3 154 aa10.67□□□□□ -0.7
CLK3-227ENST00000570296 SSBP4Q9BWG4 385 aaPredicted RBP10.67□□□□□ -0.7
CLK3-227ENST00000570296 PDE6DO43924 150 aa10.66□□□□□ -0.7
CLK3-227ENST00000570296 S100A9P06702 114 aaKnown RBP10.66□□□□□ -0.7
CLK3-227ENST00000570296 CAMPP49913 170 aa10.66□□□□□ -0.7
CLK3-227ENST00000570296 MEF2BQ02080 365 aaPredicted RBP10.66□□□□□ -0.7
CLK3-227ENST00000570296 OR5AL1P0C617 328 aa10.65□□□□□ -0.7
CLK3-227ENST00000570296 FMC1Q96HJ9 113 aa10.65□□□□□ -0.7
CLK3-227ENST00000570296 MUC21A0A140T8X8 626 aa10.64□□□□□ -0.71
CLK3-227ENST00000570296 COTL1Q14019 142 aa10.64□□□□□ -0.71
CLK3-227ENST00000570296 EIF5A2Q9GZV4 153 aaKnown RBP10.64□□□□□ -0.71
CLK3-227ENST00000570296 SCO2A0A1W2PP80 73 aa10.63□□□□□ -0.71
CLK3-227ENST00000570296 KRTAP9-7A8MTY7 169 aa10.63□□□□□ -0.71
CLK3-227ENST00000570296 APOMO95445 188 aa10.63□□□□□ -0.71
CLK3-227ENST00000570296 XCL1P47992 114 aa10.63□□□□□ -0.71
CLK3-227ENST00000570296 SUMO4Q6EEV6 95 aa10.63□□□□□ -0.71
CLK3-227ENST00000570296 AMMECR1LQ6DCA0 310 aa10.62□□□□□ -0.71
CLK3-227ENST00000570296 KRTAP11-1Q8IUC1 163 aa10.62□□□□□ -0.71
CLK3-227ENST00000570296 RPP21Q9H633 154 aaKnown RBP10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms