RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 C20orf203Q8NBC4 194 aa9.44□□□□□ -0.9
SHMT2-235ENST00000557740 NUDT10Q8NFP7 164 aa9.44□□□□□ -0.9
SHMT2-235ENST00000557740 NUDT11Q96G61 164 aa9.44□□□□□ -0.9
SHMT2-235ENST00000557740 RPP21Q9H633 154 aaKnown RBP9.44□□□□□ -0.9
SHMT2-235ENST00000557740 IGLV4-60A0A075B6I1 120 aa9.43□□□□□ -0.9
SHMT2-235ENST00000557740 GFRA4Q9GZZ7 299 aa9.43□□□□□ -0.9
SHMT2-235ENST00000557740 AP5S1Q9NUS5 200 aa9.43□□□□□ -0.9
SHMT2-235ENST00000557740 CNFNQ9BYD5 112 aa9.42□□□□□ -0.9
SHMT2-235ENST00000557740 RNASE7Q9H1E1 156 aaKnown RBP9.42□□□□□ -0.9
SHMT2-235ENST00000557740 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.42□□□□□ -0.9
SHMT2-235ENST00000557740 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.41□□□□□ -0.9
SHMT2-235ENST00000557740 TRAV26-2A0A0B4J265 109 aa9.41□□□□□ -0.9
SHMT2-235ENST00000557740 OXTP01178 125 aa9.41□□□□□ -0.9
SHMT2-235ENST00000557740 CNBPP62633 177 aaKnown RBP9.41□□□□□ -0.9
SHMT2-235ENST00000557740 SMIM15Q7Z3B0 74 aa9.41□□□□□ -0.9
SHMT2-235ENST00000557740 K7EN84 100 aa9.4□□□□□ -0.9
SHMT2-235ENST00000557740 SDIM1Q6ZPB5 146 aa9.4□□□□□ -0.9
SHMT2-235ENST00000557740 IGHV3-64A0A075B6Q5 118 aa9.39□□□□□ -0.91
SHMT2-235ENST00000557740 AMMECR1LQ6DCA0 310 aa9.39□□□□□ -0.91
SHMT2-235ENST00000557740 GATD1Q8NB37 220 aa9.39□□□□□ -0.91
SHMT2-235ENST00000557740 OCC1Q8TAD7 63 aa9.39□□□□□ -0.91
SHMT2-235ENST00000557740 IGKV3OR2-268A0A0C4DH90 116 aa9.38□□□□□ -0.91
SHMT2-235ENST00000557740 PANO1I0J062 215 aa9.38□□□□□ -0.91
SHMT2-235ENST00000557740 GAGE12HA6NDE8 117 aa9.37□□□□□ -0.91
SHMT2-235ENST00000557740 TMEM250H0YL14 139 aa9.37□□□□□ -0.91
SHMT2-235ENST00000557740 NCR2O95944 276 aa9.37□□□□□ -0.91
SHMT2-235ENST00000557740 APCSP02743 223 aa9.37□□□□□ -0.91
SHMT2-235ENST00000557740 BLOC1S1P78537 153 aa9.37□□□□□ -0.91
SHMT2-235ENST00000557740 RNASEKQ6P5S7 137 aaKnown RBP9.37□□□□□ -0.91
SHMT2-235ENST00000557740 CFAP161Q6P656 301 aa9.37□□□□□ -0.91
SHMT2-235ENST00000557740 TEX261Q6UWH6 196 aa9.37□□□□□ -0.91
SHMT2-235ENST00000557740 GTSF1Q8WW33 167 aa9.37□□□□□ -0.91
SHMT2-235ENST00000557740 RPL39LQ96EH5 51 aaKnown RBP9.37□□□□□ -0.91
SHMT2-235ENST00000557740 DPH3Q96FX2 82 aa9.37□□□□□ -0.91
SHMT2-235ENST00000557740 GATCO43716 136 aaKnown RBP9.36□□□□□ -0.91
SHMT2-235ENST00000557740 CEBPGP53567 150 aa9.36□□□□□ -0.91
SHMT2-235ENST00000557740 CIRBPQ14011 172 aaKnown RBP9.36□□□□□ -0.91
SHMT2-235ENST00000557740 SERTAD4-AS1Q5TG53 156 aa9.36□□□□□ -0.91
SHMT2-235ENST00000557740 Q6ZNX1 250 aa9.36□□□□□ -0.91
SHMT2-235ENST00000557740 AKAP14Q86UN6 197 aa9.36□□□□□ -0.91
SHMT2-235ENST00000557740 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.35□□□□□ -0.91
SHMT2-235ENST00000557740 IGKV2-29A2NJV5 120 aaPredicted RBP9.35□□□□□ -0.91
SHMT2-235ENST00000557740 SDHAF1A6NFY7 115 aa9.35□□□□□ -0.91
SHMT2-235ENST00000557740 A8MWL6 223 aa9.35□□□□□ -0.91
SHMT2-235ENST00000557740 HNRNPA3P51991 378 aaKnown RBP9.35□□□□□ -0.91
SHMT2-235ENST00000557740 ALKAL2Q6UX46 152 aa9.35□□□□□ -0.91
SHMT2-235ENST00000557740 BORCS7Q96B45 105 aa9.35□□□□□ -0.91
SHMT2-235ENST00000557740 H7C423 109 aa9.34□□□□□ -0.91
SHMT2-235ENST00000557740 FOXA3P55318 350 aaPredicted RBP9.34□□□□□ -0.91
SHMT2-235ENST00000557740 FAM231DQ6ZW35 169 aa9.34□□□□□ -0.91
SHMT2-235ENST00000557740 C15orf56Q8N910 161 aa9.34□□□□□ -0.91
SHMT2-235ENST00000557740 CHCHD10Q8WYQ3 142 aaPredicted RBP9.34□□□□□ -0.91
SHMT2-235ENST00000557740 RNF185Q96GF1 192 aa9.34□□□□□ -0.91
SHMT2-235ENST00000557740 SLPIP03973 132 aa9.33□□□□□ -0.92
SHMT2-235ENST00000557740 CHTF8P0CG12 524 aa9.33□□□□□ -0.92
SHMT2-235ENST00000557740 FGF6P10767 208 aa9.33□□□□□ -0.92
SHMT2-235ENST00000557740 HIGD2BQ4VC39 106 aa9.33□□□□□ -0.92
SHMT2-235ENST00000557740 CT83Q5H943 113 aa9.33□□□□□ -0.92
SHMT2-235ENST00000557740 SPACA4Q8TDM5 124 aa9.33□□□□□ -0.92
SHMT2-235ENST00000557740 A0A087WYN8 130 aa9.32□□□□□ -0.92
SHMT2-235ENST00000557740 ZNF25P17030 456 aaPredicted RBP9.32□□□□□ -0.92
SHMT2-235ENST00000557740 PMCHP20382 165 aa9.32□□□□□ -0.92
SHMT2-235ENST00000557740 BTF3L4Q96K17 158 aa9.32□□□□□ -0.92
SHMT2-235ENST00000557740 I3L3M4 83 aa9.31□□□□□ -0.92
SHMT2-235ENST00000557740 RPS10P46783 165 aaKnown RBP9.31□□□□□ -0.92
SHMT2-235ENST00000557740 TMEM101Q96IK0 257 aa9.31□□□□□ -0.92
SHMT2-235ENST00000557740 SMIM7Q9BQ49 75 aa9.31□□□□□ -0.92
SHMT2-235ENST00000557740 LRP1Q07954 4544 aaKnown RBP9.31□□□□□ -0.92
SHMT2-235ENST00000557740 hCG_2014768A0A024R1R8 64 aa9.3□□□□□ -0.92
SHMT2-235ENST00000557740 LYPD6BQ8NI32 183 aa9.3□□□□□ -0.92
SHMT2-235ENST00000557740 EIF5A2Q9GZV4 153 aaKnown RBP9.3□□□□□ -0.92
SHMT2-235ENST00000557740 ST20Q9HBF5 79 aa9.3□□□□□ -0.92
SHMT2-235ENST00000557740 GVQW2A0A096LPI5 108 aaPredicted RBP9.29□□□□□ -0.92
SHMT2-235ENST00000557740 TRBV6-5A0A0K0K1A5 114 aa9.29□□□□□ -0.92
SHMT2-235ENST00000557740 A0A1B0GUT8 65 aa9.29□□□□□ -0.92
SHMT2-235ENST00000557740 A0A1B0GVG6 124 aa9.29□□□□□ -0.92
SHMT2-235ENST00000557740 HIGD1CA8MV81 97 aa9.29□□□□□ -0.92
SHMT2-235ENST00000557740 NDUFS6O75380 124 aaKnown RBP9.29□□□□□ -0.92
SHMT2-235ENST00000557740 COX6A2Q02221 97 aa9.29□□□□□ -0.92
SHMT2-235ENST00000557740 OR5A1Q8NGJ0 315 aa9.29□□□□□ -0.92
SHMT2-235ENST00000557740 C7orf33Q8WU49 177 aa9.29□□□□□ -0.92
SHMT2-235ENST00000557740 TSKUQ8WUA8 353 aa9.29□□□□□ -0.92
SHMT2-235ENST00000557740 MRAP2Q96G30 205 aa9.29□□□□□ -0.92
SHMT2-235ENST00000557740 TMEM242Q9NWH2 141 aa9.29□□□□□ -0.92
SHMT2-235ENST00000557740 PLAC8Q9NZF1 115 aa9.29□□□□□ -0.92
SHMT2-235ENST00000557740 IGKV2-24A0A0C4DH68 120 aa9.28□□□□□ -0.92
SHMT2-235ENST00000557740 XCL1P47992 114 aa9.28□□□□□ -0.92
SHMT2-235ENST00000557740 FOXI1Q12951 378 aa9.28□□□□□ -0.92
SHMT2-235ENST00000557740 MAJINQ3KP22 176 aa9.28□□□□□ -0.92
SHMT2-235ENST00000557740 Q6ZRU5 148 aa9.28□□□□□ -0.92
SHMT2-235ENST00000557740 LINC01551Q86U37 167 aa9.28□□□□□ -0.92
SHMT2-235ENST00000557740 PLA2G2DQ9UNK4 145 aa9.28□□□□□ -0.92
SHMT2-235ENST00000557740 FAM231BA6NCW3 169 aa9.27□□□□□ -0.93
SHMT2-235ENST00000557740 CCL25O15444 150 aa9.27□□□□□ -0.93
SHMT2-235ENST00000557740 TSHBP01222 138 aa9.27□□□□□ -0.93
SHMT2-235ENST00000557740 PRSS3P2Q8NHM4 247 aa9.27□□□□□ -0.93
SHMT2-235ENST00000557740 FAM210AQ96ND0 272 aa9.27□□□□□ -0.93
SHMT2-235ENST00000557740 TMEM191AQ9H0A3 160 aa9.27□□□□□ -0.93
SHMT2-235ENST00000557740 ZNF727A8MUV8 499 aa9.26□□□□□ -0.93
SHMT2-235ENST00000557740 GAS8-AS1O95177 125 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms