RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 TRAV12-1A0A0B4J245 112 aa12.19□□□□□ -0.46
CUX1-213ENST00000549414 SPANXA1Q9NS26 97 aa12.19□□□□□ -0.46
CUX1-213ENST00000549414 TNRC6BQ9UPQ9 1833 aaKnown RBP12.19□□□□□ -0.46
CUX1-213ENST00000549414 Q6ZSV7 163 aa12.19□□□□□ -0.46
CUX1-213ENST00000549414 C20orf203Q8NBC4 194 aa12.19□□□□□ -0.46
CUX1-213ENST00000549414 TRBV20-1A0A075B6N2 111 aa12.18□□□□□ -0.46
CUX1-213ENST00000549414 GYPEP15421 78 aa12.18□□□□□ -0.46
CUX1-213ENST00000549414 MAP1AP78559 2803 aaPredicted RBP12.18□□□□□ -0.46
CUX1-213ENST00000549414 IGLV10-54A0A075B6I4 117 aa12.17□□□□□ -0.46
CUX1-213ENST00000549414 E9PLD3 99 aa12.17□□□□□ -0.46
CUX1-213ENST00000549414 K7EQD1 137 aa12.17□□□□□ -0.46
CUX1-213ENST00000549414 RNASE8Q8TDE3 154 aaKnown RBP12.17□□□□□ -0.46
CUX1-213ENST00000549414 TIMM17AQ99595 171 aa12.17□□□□□ -0.46
CUX1-213ENST00000549414 MUSTN1Q8IVN3 82 aa12.17□□□□□ -0.46
CUX1-213ENST00000549414 UBE2WQ96B02 151 aa12.17□□□□□ -0.46
CUX1-213ENST00000549414 URB1-AS1Q96HZ7 61 aa12.17□□□□□ -0.46
CUX1-213ENST00000549414 BBC3Q96PG8 261 aaPredicted RBP12.17□□□□□ -0.46
CUX1-213ENST00000549414 F8W1H4 67 aa12.17□□□□□ -0.46
CUX1-213ENST00000549414 PROK1P58294 105 aa12.17□□□□□ -0.46
CUX1-213ENST00000549414 Q6ZTI0 123 aa12.17□□□□□ -0.46
CUX1-213ENST00000549414 RNF152Q8N8N0 203 aa12.17□□□□□ -0.46
CUX1-213ENST00000549414 TRBV7-3A0A075B6L6 115 aa12.16□□□□□ -0.46
CUX1-213ENST00000549414 CFC1BP0CG36 223 aa12.16□□□□□ -0.46
CUX1-213ENST00000549414 CFC1P0CG37 223 aa12.16□□□□□ -0.46
CUX1-213ENST00000549414 DEFB114Q30KQ6 69 aa12.16□□□□□ -0.46
CUX1-213ENST00000549414 SETXQ7Z333 2677 aaKnown RBP12.16□□□□□ -0.46
CUX1-213ENST00000549414 CRLF1O75462 422 aa12.16□□□□□ -0.46
CUX1-213ENST00000549414 LY6G6DO95868 133 aa12.16□□□□□ -0.46
CUX1-213ENST00000549414 PLA2G2AP14555 144 aa12.16□□□□□ -0.46
CUX1-213ENST00000549414 LRRC75A-AS1Q8N1F1 130 aa12.16□□□□□ -0.46
CUX1-213ENST00000549414 RNASE3P12724 160 aaKnown RBP12.15□□□□□ -0.46
CUX1-213ENST00000549414 GAGE2BQ13066 116 aa12.15□□□□□ -0.46
CUX1-213ENST00000549414 GAGE2EQ4V326 116 aa12.15□□□□□ -0.46
CUX1-213ENST00000549414 GAGE2DQ9UEU5 116 aa12.15□□□□□ -0.46
CUX1-213ENST00000549414 TEX48A0A1B0GUV7 120 aa12.15□□□□□ -0.46
CUX1-213ENST00000549414 ZNF702PQ9H963 129 aa12.15□□□□□ -0.46
CUX1-213ENST00000549414 C16orf74Q96GX8 76 aa12.15□□□□□ -0.46
CUX1-213ENST00000549414 HIGD1BQ9P298 99 aa12.14□□□□□ -0.47
CUX1-213ENST00000549414 HELZ2Q9BYK8 2649 aaKnown RBP12.14□□□□□ -0.47
CUX1-213ENST00000549414 CFAP46Q8IYW2 2715 aa12.14□□□□□ -0.47
CUX1-213ENST00000549414 IGLV1-40P01703 118 aa12.14□□□□□ -0.47
CUX1-213ENST00000549414 IGKV2D-24A0A075B6R9 120 aa12.13□□□□□ -0.47
CUX1-213ENST00000549414 WFDC2Q14508 124 aa12.13□□□□□ -0.47
CUX1-213ENST00000549414 DNAJC30Q96LL9 226 aa12.13□□□□□ -0.47
CUX1-213ENST00000549414 ANAPC13Q9BS18 74 aa12.13□□□□□ -0.47
CUX1-213ENST00000549414 U3KQK5 164 aa12.13□□□□□ -0.47
CUX1-213ENST00000549414 LGALS9O00182 355 aa12.13□□□□□ -0.47
CUX1-213ENST00000549414 Q6ZUT4 128 aa12.13□□□□□ -0.47
CUX1-213ENST00000549414 AGRNO00468 2067 aa12.13□□□□□ -0.47
CUX1-213ENST00000549414 SPART-AS1P0CW21 52 aa12.13□□□□□ -0.47
CUX1-213ENST00000549414 TRAV25A0A0B4J276 109 aa12.12□□□□□ -0.47
CUX1-213ENST00000549414 ATP6V0E2Q8NHE4 81 aa12.12□□□□□ -0.47
CUX1-213ENST00000549414 MAPKAPK5-AS1Q8N8E1 139 aa12.12□□□□□ -0.47
CUX1-213ENST00000549414 NRACQ8N912 160 aa12.12□□□□□ -0.47
CUX1-213ENST00000549414 PPDPFLQ8WWR9 84 aa12.12□□□□□ -0.47
CUX1-213ENST00000549414 NTN5Q8WTR8 489 aaPredicted RBP12.11□□□□□ -0.47
CUX1-213ENST00000549414 LAMTOR3Q9UHA4 124 aa12.11□□□□□ -0.47
CUX1-213ENST00000549414 GAGE2AQ6NT46 116 aa12.11□□□□□ -0.47
CUX1-213ENST00000549414 Q8N976 141 aa12.1□□□□□ -0.47
CUX1-213ENST00000549414 DCANP1Q8TF63 244 aa12.1□□□□□ -0.47
CUX1-213ENST00000549414 WFDC10AQ9H1F0 79 aa12.1□□□□□ -0.47
CUX1-213ENST00000549414 ATP5G1P05496 136 aa12.1□□□□□ -0.47
CUX1-213ENST00000549414 DAZ2Q13117 558 aaKnown RBP12.1□□□□□ -0.47
CUX1-213ENST00000549414 DAZ4Q86SG3 579 aaKnown RBP12.1□□□□□ -0.47
CUX1-213ENST00000549414 DAZ3Q9NR90 486 aaKnown RBP12.1□□□□□ -0.47
CUX1-213ENST00000549414 SLC25A29Q8N8R3 303 aa12.1□□□□□ -0.47
CUX1-213ENST00000549414 CARD19Q96LW7 228 aa12.1□□□□□ -0.47
CUX1-213ENST00000549414 PTPRBP23467 1997 aa12.1□□□□□ -0.47
CUX1-213ENST00000549414 ZFAND6Q6FIF0 208 aa12.09□□□□□ -0.47
CUX1-213ENST00000549414 IGHV3-30-3P0DP02 117 aa12.09□□□□□ -0.47
CUX1-213ENST00000549414 NEXN-AS1Q8NBZ9 246 aa12.09□□□□□ -0.47
CUX1-213ENST00000549414 TMEM263Q8WUH6 116 aaKnown RBP12.09□□□□□ -0.47
CUX1-213ENST00000549414 SPEGQ15772 3267 aa12.09□□□□□ -0.47
CUX1-213ENST00000549414 M0QY20 66 aa12.09□□□□□ -0.47
CUX1-213ENST00000549414 HHLA3Q9XRX5 114 aa12.09□□□□□ -0.47
CUX1-213ENST00000549414 PSMG3-AS1Q96PY0 264 aa12.08□□□□□ -0.48
CUX1-213ENST00000549414 TEP1Q99973 2627 aaKnown RBP12.08□□□□□ -0.48
CUX1-213ENST00000549414 DSPP15924 2871 aaKnown RBP12.08□□□□□ -0.48
CUX1-213ENST00000549414 IGHV3-30P01768 117 aa12.08□□□□□ -0.48
CUX1-213ENST00000549414 IGHV3-33P01772 117 aa12.08□□□□□ -0.48
CUX1-213ENST00000549414 IGHV3-30-5P0DP03 117 aa12.08□□□□□ -0.48
CUX1-213ENST00000549414 LINC00482Q8N8I6 264 aa12.08□□□□□ -0.48
CUX1-213ENST00000549414 ODF3Q96PU9 254 aa12.08□□□□□ -0.48
CUX1-213ENST00000549414 VSIG2Q96IQ7 327 aa12.07□□□□□ -0.48
CUX1-213ENST00000549414 KLLNB2CW77 178 aa12.07□□□□□ -0.48
CUX1-213ENST00000549414 LINC00467Q9BRT7 94 aa12.07□□□□□ -0.48
CUX1-213ENST00000549414 GAGE12HA6NDE8 117 aa12.07□□□□□ -0.48
CUX1-213ENST00000549414 LINC01006Q8NI28 216 aa12.05□□□□□ -0.48
CUX1-213ENST00000549414 HIST1H4AP62805 103 aaKnown RBP12.04□□□□□ -0.48
CUX1-213ENST00000549414 C2orf91Q6ZV80 131 aa12.04□□□□□ -0.48
CUX1-213ENST00000549414 PTH2Q96A98 100 aa12.04□□□□□ -0.48
CUX1-213ENST00000549414 CDKN2A-AS1Q9UH64 79 aa12.04□□□□□ -0.48
CUX1-213ENST00000549414 IGLV4-3A0A075B6K6 122 aa12.03□□□□□ -0.48
CUX1-213ENST00000549414 TRAV4A0A0B4J268 109 aa12.03□□□□□ -0.48
CUX1-213ENST00000549414 PRSS47A8MTI9 375 aa12.03□□□□□ -0.48
CUX1-213ENST00000549414 PRB2P02812 416 aaPredicted RBP12.03□□□□□ -0.48
CUX1-213ENST00000549414 MRPL23Q16540 153 aaKnown RBP12.03□□□□□ -0.48
CUX1-213ENST00000549414 CNFNQ9BYD5 112 aa12.03□□□□□ -0.48
CUX1-213ENST00000549414 IGHV1-58A0A0C4DH39 117 aa12.03□□□□□ -0.48
CUX1-213ENST00000549414 CFAP126Q5VTH2 177 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms