RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	DAZAP1	Q96EP5	407 aa	Known RBP	7.49	□□□□□ -1.21
VTI1A-208	ENST00000494728	NUDT11	Q96G61	164 aa		7.49	□□□□□ -1.21
VTI1A-208	ENST00000494728	RNASE7	Q9H1E1	156 aa	Known RBP	7.49	□□□□□ -1.21
VTI1A-208	ENST00000494728	TNXB	P22105	4242 aa		7.48	□□□□□ -1.21
VTI1A-208	ENST00000494728	PKIA	P61925	76 aa		7.48	□□□□□ -1.21
VTI1A-208	ENST00000494728	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	7.48	□□□□□ -1.21
VTI1A-208	ENST00000494728	CNFN	Q9BYD5	112 aa		7.48	□□□□□ -1.21
VTI1A-208	ENST00000494728	DPH3P1	Q9H4G8	78 aa		7.48	□□□□□ -1.21
VTI1A-208	ENST00000494728	TEX46	H3BTG2	121 aa		7.47	□□□□□ -1.21
VTI1A-208	ENST00000494728		H7C1H1	209 aa		7.47	□□□□□ -1.21
VTI1A-208	ENST00000494728	IFNA1	P01562	189 aa		7.47	□□□□□ -1.21
VTI1A-208	ENST00000494728	SLPI	P03973	132 aa		7.47	□□□□□ -1.21
VTI1A-208	ENST00000494728	FOXA3	P55318	350 aa	Predicted RBP	7.47	□□□□□ -1.21
VTI1A-208	ENST00000494728	C9orf163	Q8N9P6	203 aa		7.47	□□□□□ -1.21
VTI1A-208	ENST00000494728	GTSF1	Q8WW33	167 aa		7.47	□□□□□ -1.21
VTI1A-208	ENST00000494728	PGLYRP4	Q96LB8	373 aa		7.47	□□□□□ -1.21
VTI1A-208	ENST00000494728	TMEM243	Q9BU79	118 aa		7.47	□□□□□ -1.21
VTI1A-208	ENST00000494728		F2Z2F3	143 aa		7.46	□□□□□ -1.22
VTI1A-208	ENST00000494728	TRGC1	P0CF51	173 aa		7.46	□□□□□ -1.22
VTI1A-208	ENST00000494728	ALKAL2	Q6UX46	152 aa		7.46	□□□□□ -1.22
VTI1A-208	ENST00000494728	GATD1	Q8NB37	220 aa		7.46	□□□□□ -1.22
VTI1A-208	ENST00000494728	OCC1	Q8TAD7	63 aa		7.46	□□□□□ -1.22
VTI1A-208	ENST00000494728	RPL39L	Q96EH5	51 aa	Known RBP	7.46	□□□□□ -1.22
VTI1A-208	ENST00000494728	RPP21	Q9H633	154 aa	Known RBP	7.46	□□□□□ -1.22
VTI1A-208	ENST00000494728	NIT2	Q9NQR4	276 aa		7.46	□□□□□ -1.22
VTI1A-208	ENST00000494728	UBR4	Q5T4S7	5183 aa		7.46	□□□□□ -1.22
VTI1A-208	ENST00000494728		A0A1B0GUV1	79 aa		7.45	□□□□□ -1.22
VTI1A-208	ENST00000494728	XKRY2	A2RUG3	117 aa		7.45	□□□□□ -1.22
VTI1A-208	ENST00000494728	SDIM1	Q6ZPB5	146 aa		7.45	□□□□□ -1.22
VTI1A-208	ENST00000494728	GAS8-AS1	O95177	125 aa		7.44	□□□□□ -1.22
VTI1A-208	ENST00000494728	CHTF8	P0CG12	524 aa		7.44	□□□□□ -1.22
VTI1A-208	ENST00000494728	AMT	P48728	403 aa		7.44	□□□□□ -1.22
VTI1A-208	ENST00000494728	RPL37A	P61513	92 aa	Known RBP	7.44	□□□□□ -1.22
VTI1A-208	ENST00000494728	CNBP	P62633	177 aa	Known RBP	7.44	□□□□□ -1.22
VTI1A-208	ENST00000494728	TWIST1	Q15672	202 aa		7.44	□□□□□ -1.22
VTI1A-208	ENST00000494728	DGAT2L7P	Q6IED9	249 aa		7.44	□□□□□ -1.22
VTI1A-208	ENST00000494728	C15orf56	Q8N910	161 aa		7.44	□□□□□ -1.22
VTI1A-208	ENST00000494728	hDV102S1	A0JD36	115 aa		7.43	□□□□□ -1.22
VTI1A-208	ENST00000494728	WDR73	Q6P4I2	378 aa		7.43	□□□□□ -1.22
VTI1A-208	ENST00000494728	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	7.42	□□□□□ -1.22
VTI1A-208	ENST00000494728	IGKV2-29	A2NJV5	120 aa	Predicted RBP	7.42	□□□□□ -1.22
VTI1A-208	ENST00000494728	CIRBP	Q14011	172 aa	Known RBP	7.42	□□□□□ -1.22
VTI1A-208	ENST00000494728	COTL1	Q14019	142 aa		7.42	□□□□□ -1.22
VTI1A-208	ENST00000494728	BIN3	Q9NQY0	253 aa		7.42	□□□□□ -1.22
VTI1A-208	ENST00000494728	TRAV8-4	A0A0B4J246	113 aa		7.41	□□□□□ -1.22
VTI1A-208	ENST00000494728	IGKV3OR2-268	A0A0C4DH90	116 aa		7.41	□□□□□ -1.22
VTI1A-208	ENST00000494728	UBE2L6	O14933	153 aa		7.41	□□□□□ -1.22
VTI1A-208	ENST00000494728	CLRN3	Q8NCR9	226 aa		7.41	□□□□□ -1.22
VTI1A-208	ENST00000494728	LYPD6B	Q8NI32	183 aa		7.41	□□□□□ -1.22
VTI1A-208	ENST00000494728	GAGE12H	A6NDE8	117 aa		7.4	□□□□□ -1.22
VTI1A-208	ENST00000494728	TAGLN2	P37802	199 aa	Known RBP	7.4	□□□□□ -1.22
VTI1A-208	ENST00000494728	BLOC1S1	P78537	153 aa		7.4	□□□□□ -1.22
VTI1A-208	ENST00000494728	FAM231B	A6NCW3	169 aa		7.39	□□□□□ -1.23
VTI1A-208	ENST00000494728	SDHAF1	A6NFY7	115 aa		7.39	□□□□□ -1.23
VTI1A-208	ENST00000494728	TMEM250	H0YL14	139 aa		7.39	□□□□□ -1.23
VTI1A-208	ENST00000494728	OXT	P01178	125 aa		7.39	□□□□□ -1.23
VTI1A-208	ENST00000494728	CEBPG	P53567	150 aa		7.39	□□□□□ -1.23
VTI1A-208	ENST00000494728	HIGD2B	Q4VC39	106 aa		7.39	□□□□□ -1.23
VTI1A-208	ENST00000494728	FAM231D	Q6ZW35	169 aa		7.39	□□□□□ -1.23
VTI1A-208	ENST00000494728	SPACA4	Q8TDM5	124 aa		7.39	□□□□□ -1.23
VTI1A-208	ENST00000494728		A0A087WYN8	130 aa		7.38	□□□□□ -1.23
VTI1A-208	ENST00000494728	GATC	O43716	136 aa	Known RBP	7.38	□□□□□ -1.23
VTI1A-208	ENST00000494728	APCS	P02743	223 aa		7.38	□□□□□ -1.23
VTI1A-208	ENST00000494728	RPS10	P46783	165 aa	Known RBP	7.38	□□□□□ -1.23
VTI1A-208	ENST00000494728	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	7.38	□□□□□ -1.23
VTI1A-208	ENST00000494728	IGHV3-64	A0A075B6Q5	118 aa		7.37	□□□□□ -1.23
VTI1A-208	ENST00000494728	TSHB	P01222	138 aa		7.37	□□□□□ -1.23
VTI1A-208	ENST00000494728	MT1HL1	P0DM35	61 aa		7.37	□□□□□ -1.23
VTI1A-208	ENST00000494728	FGF6	P10767	208 aa		7.37	□□□□□ -1.23
VTI1A-208	ENST00000494728	RNASEK	Q6P5S7	137 aa	Known RBP	7.37	□□□□□ -1.23
VTI1A-208	ENST00000494728	TMEM242	Q9NWH2	141 aa		7.37	□□□□□ -1.23
VTI1A-208	ENST00000494728	TRBV6-5	A0A0K0K1A5	114 aa		7.36	□□□□□ -1.23
VTI1A-208	ENST00000494728	HIGD1C	A8MV81	97 aa		7.36	□□□□□ -1.23
VTI1A-208	ENST00000494728	NCR2	O95944	276 aa		7.36	□□□□□ -1.23
VTI1A-208	ENST00000494728	FOXI1	Q12951	378 aa		7.36	□□□□□ -1.23
VTI1A-208	ENST00000494728	CT83	Q5H943	113 aa		7.36	□□□□□ -1.23
VTI1A-208	ENST00000494728	AMMECR1L	Q6DCA0	310 aa		7.36	□□□□□ -1.23
VTI1A-208	ENST00000494728	LINC01551	Q86U37	167 aa		7.36	□□□□□ -1.23
VTI1A-208	ENST00000494728	RNF185	Q96GF1	192 aa		7.36	□□□□□ -1.23
VTI1A-208	ENST00000494728	SMIM7	Q9BQ49	75 aa		7.36	□□□□□ -1.23
VTI1A-208	ENST00000494728	AP5S1	Q9NUS5	200 aa		7.36	□□□□□ -1.23
VTI1A-208	ENST00000494728	LRP2	P98164	4655 aa		7.35	□□□□□ -1.23
VTI1A-208	ENST00000494728	GVQW2	A0A096LPI5	108 aa	Predicted RBP	7.35	□□□□□ -1.23
VTI1A-208	ENST00000494728		A8MWL6	223 aa		7.35	□□□□□ -1.23
VTI1A-208	ENST00000494728	ESD	P10768	282 aa		7.35	□□□□□ -1.23
VTI1A-208	ENST00000494728	COX6A2	Q02221	97 aa		7.35	□□□□□ -1.23
VTI1A-208	ENST00000494728	PRSS3P2	Q8NHM4	247 aa		7.35	□□□□□ -1.23
VTI1A-208	ENST00000494728	LINC00526	Q96FQ7	95 aa		7.35	□□□□□ -1.23
VTI1A-208	ENST00000494728	EIF5A2	Q9GZV4	153 aa	Known RBP	7.35	□□□□□ -1.23
VTI1A-208	ENST00000494728	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	7.34	□□□□□ -1.23
VTI1A-208	ENST00000494728	SMKR1	H3BMG3	65 aa		7.34	□□□□□ -1.23
VTI1A-208	ENST00000494728		I3L3M4	83 aa		7.34	□□□□□ -1.23
VTI1A-208	ENST00000494728	PHOX2A	O14813	284 aa		7.34	□□□□□ -1.23
VTI1A-208	ENST00000494728	SRP19	P09132	144 aa	Known RBP	7.34	□□□□□ -1.23
VTI1A-208	ENST00000494728	SMIM15	Q7Z3B0	74 aa		7.34	□□□□□ -1.23
VTI1A-208	ENST00000494728	AMN1	Q8IY45	258 aa		7.34	□□□□□ -1.23
VTI1A-208	ENST00000494728	TSKU	Q8WUA8	353 aa		7.34	□□□□□ -1.23
VTI1A-208	ENST00000494728	FAM210A	Q96ND0	272 aa		7.34	□□□□□ -1.23
VTI1A-208	ENST00000494728	PLAC8	Q9NZF1	115 aa		7.34	□□□□□ -1.23
VTI1A-208	ENST00000494728		A0A096LNI7	61 aa		7.33	□□□□□ -1.24

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