RNA–Protein interactions for RNA: ENST00000491028.1

MCF2L-230, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 4

Gene MCF2L, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-230ENST00000491028 LINC01546A6NGU7 62 aa12.81□□□□□ -0.36
MCF2L-230ENST00000491028 HIST1H2BKO60814 126 aa12.81□□□□□ -0.36
MCF2L-230ENST00000491028 HIST1H2BJP06899 126 aa12.81□□□□□ -0.36
MCF2L-230ENST00000491028 HIST1H2BOP23527 126 aa12.81□□□□□ -0.36
MCF2L-230ENST00000491028 HIST1H2BBP33778 126 aa12.81□□□□□ -0.36
MCF2L-230ENST00000491028 HIST1H2BDP58876 126 aa12.81□□□□□ -0.36
MCF2L-230ENST00000491028 HIST1H2BCP62807 126 aa12.81□□□□□ -0.36
MCF2L-230ENST00000491028 HIST2H2BEQ16778 126 aa12.81□□□□□ -0.36
MCF2L-230ENST00000491028 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.81□□□□□ -0.36
MCF2L-230ENST00000491028 FA2HQ7L5A8 372 aa12.81□□□□□ -0.36
MCF2L-230ENST00000491028 HIST1H2BHQ93079 126 aa12.81□□□□□ -0.36
MCF2L-230ENST00000491028 HIST1H2BNQ99877 126 aa12.81□□□□□ -0.36
MCF2L-230ENST00000491028 HIST1H2BMQ99879 126 aa12.81□□□□□ -0.36
MCF2L-230ENST00000491028 LINC00588Q9Y4M8 146 aa12.81□□□□□ -0.36
MCF2L-230ENST00000491028 TRAV8-6A0A0B4J262 113 aa12.8□□□□□ -0.36
MCF2L-230ENST00000491028 ORMDL2Q53FV1 153 aa12.8□□□□□ -0.36
MCF2L-230ENST00000491028 UPK3BQ9BT76 320 aa12.8□□□□□ -0.36
MCF2L-230ENST00000491028 TMEM243Q9BU79 118 aa12.8□□□□□ -0.36
MCF2L-230ENST00000491028 ESDP10768 282 aa12.79□□□□□ -0.36
MCF2L-230ENST00000491028 BAGE3Q86Y29 109 aa12.79□□□□□ -0.36
MCF2L-230ENST00000491028 UBE2DNLQ8IWF7 75 aa12.79□□□□□ -0.36
MCF2L-230ENST00000491028 DEFB104AQ8WTQ1 72 aa12.79□□□□□ -0.36
MCF2L-230ENST00000491028 CHCHD7Q9BUK0 85 aa12.79□□□□□ -0.36
MCF2L-230ENST00000491028 LINC00614P0C842 121 aa12.78□□□□□ -0.36
MCF2L-230ENST00000491028 PKIAP61925 76 aa12.78□□□□□ -0.36
MCF2L-230ENST00000491028 LAGE3Q14657 143 aa12.78□□□□□ -0.36
MCF2L-230ENST00000491028 NIT1Q86X76 327 aa12.78□□□□□ -0.36
MCF2L-230ENST00000491028 CHCHD1Q96BP2 118 aaKnown RBP12.78□□□□□ -0.36
MCF2L-230ENST00000491028 URB1-AS1Q96HZ7 61 aa12.78□□□□□ -0.36
MCF2L-230ENST00000491028 AP5S1Q9NUS5 200 aa12.78□□□□□ -0.36
MCF2L-230ENST00000491028 PLECQ15149 4684 aaKnown RBP12.78□□□□□ -0.36
MCF2L-230ENST00000491028 H7C423 109 aa12.77□□□□□ -0.37
MCF2L-230ENST00000491028 TMEM18Q96B42 140 aa12.77□□□□□ -0.37
MCF2L-230ENST00000491028 CHCHD5Q9BSY4 110 aa12.77□□□□□ -0.37
MCF2L-230ENST00000491028 G0S2P27469 103 aa12.76□□□□□ -0.37
MCF2L-230ENST00000491028 LGALS9CQ6DKI2 356 aa12.76□□□□□ -0.37
MCF2L-230ENST00000491028 RNASEKQ6P5S7 137 aaKnown RBP12.76□□□□□ -0.37
MCF2L-230ENST00000491028 UBE2L6O14933 153 aa12.75□□□□□ -0.37
MCF2L-230ENST00000491028 C20orf203Q8NBC4 194 aa12.75□□□□□ -0.37
MCF2L-230ENST00000491028 TENM2Q9NT68 2774 aa12.75□□□□□ -0.37
MCF2L-230ENST00000491028 SMAGPQ0VAQ4 97 aa12.74□□□□□ -0.37
MCF2L-230ENST00000491028 WFDC10BQ8IUB3 73 aa12.74□□□□□ -0.37
MCF2L-230ENST00000491028 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.73□□□□□ -0.37
MCF2L-230ENST00000491028 IGKV2-29A2NJV5 120 aaPredicted RBP12.73□□□□□ -0.37
MCF2L-230ENST00000491028 LINC01549A6NIU2 74 aa12.73□□□□□ -0.37
MCF2L-230ENST00000491028 SERF1AO75920 110 aa12.73□□□□□ -0.37
MCF2L-230ENST00000491028 CYSLTR1Q9Y271 337 aa12.73□□□□□ -0.37
MCF2L-230ENST00000491028 SIVA1O15304 175 aa12.72□□□□□ -0.37
MCF2L-230ENST00000491028 LINC00310P59036 64 aa12.72□□□□□ -0.37
MCF2L-230ENST00000491028 GAGE6Q13070 117 aa12.72□□□□□ -0.37
MCF2L-230ENST00000491028 COA6Q5JTJ3 125 aaKnown RBP12.72□□□□□ -0.37
MCF2L-230ENST00000491028 MRPL52Q86TS9 123 aaKnown RBP12.72□□□□□ -0.37
MCF2L-230ENST00000491028 LINC00476Q8WZB0 136 aa12.72□□□□□ -0.37
MCF2L-230ENST00000491028 HSBP1O75506 76 aa12.71□□□□□ -0.37
MCF2L-230ENST00000491028 DNAH10OSP0CZ25 163 aa12.71□□□□□ -0.37
MCF2L-230ENST00000491028 ZNF25P17030 456 aaPredicted RBP12.71□□□□□ -0.37
MCF2L-230ENST00000491028 BTF3P20290 206 aaKnown RBP12.71□□□□□ -0.37
MCF2L-230ENST00000491028 LINC01556Q5JQF7 62 aa12.71□□□□□ -0.37
MCF2L-230ENST00000491028 C2orf66Q6UXQ4 117 aa12.71□□□□□ -0.37
MCF2L-230ENST00000491028 A0A087WX48 190 aa12.7□□□□□ -0.38
MCF2L-230ENST00000491028 TMEM262E9PQX1 116 aa12.7□□□□□ -0.38
MCF2L-230ENST00000491028 HBDP02042 147 aa12.7□□□□□ -0.38
MCF2L-230ENST00000491028 FGF6P10767 208 aa12.7□□□□□ -0.38
MCF2L-230ENST00000491028 TIMM21Q9BVV7 248 aa12.7□□□□□ -0.38
MCF2L-230ENST00000491028 Q9H8V8 135 aa12.7□□□□□ -0.38
MCF2L-230ENST00000491028 A0A1B0GUV1 79 aa12.69□□□□□ -0.38
MCF2L-230ENST00000491028 NDUFA6P56556 154 aa12.69□□□□□ -0.38
MCF2L-230ENST00000491028 RPL39P62891 51 aaKnown RBP12.69□□□□□ -0.38
MCF2L-230ENST00000491028 AMMECR1LQ6DCA0 310 aa12.69□□□□□ -0.38
MCF2L-230ENST00000491028 TOMM6Q96B49 74 aa12.69□□□□□ -0.38
MCF2L-230ENST00000491028 SPANXA1Q9NS26 97 aa12.69□□□□□ -0.38
MCF2L-230ENST00000491028 UBE2D4Q9Y2X8 147 aa12.69□□□□□ -0.38
MCF2L-230ENST00000491028 CSDC2Q9Y534 153 aaKnown RBP12.69□□□□□ -0.38
MCF2L-230ENST00000491028 A0A096LNJ9 63 aa12.68□□□□□ -0.38
MCF2L-230ENST00000491028 MPV17L2Q567V2 206 aa12.68□□□□□ -0.38
MCF2L-230ENST00000491028 TMEM101Q96IK0 257 aa12.68□□□□□ -0.38
MCF2L-230ENST00000491028 K7EP13 123 aa12.67□□□□□ -0.38
MCF2L-230ENST00000491028 LY6G6CO95867 125 aa12.67□□□□□ -0.38
MCF2L-230ENST00000491028 RBX1P62877 108 aa12.67□□□□□ -0.38
MCF2L-230ENST00000491028 PYGO1Q9Y3Y4 419 aa12.67□□□□□ -0.38
MCF2L-230ENST00000491028 KMT2CQ8NEZ4 4911 aaKnown RBP12.66□□□□□ -0.38
MCF2L-230ENST00000491028 NUPR1O60356 82 aa12.66□□□□□ -0.38
MCF2L-230ENST00000491028 NPSP0C0P6 89 aa12.66□□□□□ -0.38
MCF2L-230ENST00000491028 PMCHL1Q16048 86 aa12.66□□□□□ -0.38
MCF2L-230ENST00000491028 DGAT2L7PQ6IED9 249 aa12.66□□□□□ -0.38
MCF2L-230ENST00000491028 OR5A1Q8NGJ0 315 aa12.66□□□□□ -0.38
MCF2L-230ENST00000491028 IGHV3-30P01768 117 aa12.65□□□□□ -0.38
MCF2L-230ENST00000491028 IGHV3-33P01772 117 aa12.65□□□□□ -0.38
MCF2L-230ENST00000491028 S100A6P06703 90 aa12.65□□□□□ -0.38
MCF2L-230ENST00000491028 IGHV3-30-3P0DP02 117 aa12.65□□□□□ -0.38
MCF2L-230ENST00000491028 IGHV3-30-5P0DP03 117 aa12.65□□□□□ -0.38
MCF2L-230ENST00000491028 C10orf126Q8N4M7 172 aa12.65□□□□□ -0.38
MCF2L-230ENST00000491028 Q8N976 141 aa12.65□□□□□ -0.38
MCF2L-230ENST00000491028 TIMM17AQ99595 171 aa12.65□□□□□ -0.38
MCF2L-230ENST00000491028 TRAV9-2A0A087WT02 112 aa12.64□□□□□ -0.39
MCF2L-230ENST00000491028 PDZD11Q5EBL8 140 aa12.64□□□□□ -0.39
MCF2L-230ENST00000491028 TTC32Q5I0X7 151 aa12.64□□□□□ -0.39
MCF2L-230ENST00000491028 ERASQ7Z444 233 aa12.64□□□□□ -0.39
MCF2L-230ENST00000491028 Q8N3U1 123 aa12.64□□□□□ -0.39
MCF2L-230ENST00000491028 IGLV4-60A0A075B6I1 120 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms