RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 NDUFA7O95182 113 aa10.08□□□□□ -0.8
CCDC88A-211ENST00000471947 TRPT1Q86TN4 253 aaKnown RBP10.08□□□□□ -0.8
CCDC88A-211ENST00000471947 PLEKHB2Q96CS7 222 aa10.08□□□□□ -0.8
CCDC88A-211ENST00000471947 A0A0J9YY99 117 aa10.08□□□□□ -0.8
CCDC88A-211ENST00000471947 SPINK8P0C7L1 97 aa10.08□□□□□ -0.8
CCDC88A-211ENST00000471947 FABP2P12104 132 aa10.08□□□□□ -0.8
CCDC88A-211ENST00000471947 LOC100131303A0A0U1RQF7 123 aa10.07□□□□□ -0.8
CCDC88A-211ENST00000471947 KRTAP1-3Q8IUG1 177 aa10.07□□□□□ -0.8
CCDC88A-211ENST00000471947 PCP4P48539 62 aa10.07□□□□□ -0.8
CCDC88A-211ENST00000471947 UBE2V1Q13404 147 aa10.07□□□□□ -0.8
CCDC88A-211ENST00000471947 C20orf78Q9BR46 151 aa10.07□□□□□ -0.8
CCDC88A-211ENST00000471947 I3L3M4 83 aa10.06□□□□□ -0.8
CCDC88A-211ENST00000471947 M0QY20 66 aa10.06□□□□□ -0.8
CCDC88A-211ENST00000471947 M0R2P5 195 aa10.06□□□□□ -0.8
CCDC88A-211ENST00000471947 PPP1R17O96001 155 aa10.06□□□□□ -0.8
CCDC88A-211ENST00000471947 PMVKQ15126 192 aa10.06□□□□□ -0.8
CCDC88A-211ENST00000471947 SAMD13Q5VXD3 122 aa10.06□□□□□ -0.8
CCDC88A-211ENST00000471947 CHCHD5Q9BSY4 110 aa10.06□□□□□ -0.8
CCDC88A-211ENST00000471947 IGLV2-18A0A075B6J9 118 aa10.06□□□□□ -0.8
CCDC88A-211ENST00000471947 UBE2L6O14933 153 aa10.06□□□□□ -0.8
CCDC88A-211ENST00000471947 PLNP26678 52 aa10.06□□□□□ -0.8
CCDC88A-211ENST00000471947 SAMD5Q5TGI4 173 aa10.06□□□□□ -0.8
CCDC88A-211ENST00000471947 BOD1L2Q8IYS8 172 aa10.06□□□□□ -0.8
CCDC88A-211ENST00000471947 HHLA3Q9XRX5 114 aa10.06□□□□□ -0.8
CCDC88A-211ENST00000471947 GAGE6Q13070 117 aa10.05□□□□□ -0.8
CCDC88A-211ENST00000471947 COX8CQ7Z4L0 72 aa10.05□□□□□ -0.8
CCDC88A-211ENST00000471947 DEFB135Q30KP9 77 aa10.04□□□□□ -0.8
CCDC88A-211ENST00000471947 LRRC75A-AS1Q8N1F1 130 aa10.04□□□□□ -0.8
CCDC88A-211ENST00000471947 TOMM6Q96B49 74 aa10.04□□□□□ -0.8
CCDC88A-211ENST00000471947 LGALS9O00182 355 aa10.03□□□□□ -0.8
CCDC88A-211ENST00000471947 RNASE8Q8TDE3 154 aaKnown RBP10.03□□□□□ -0.8
CCDC88A-211ENST00000471947 GTF2H5Q6ZYL4 71 aa10.03□□□□□ -0.8
CCDC88A-211ENST00000471947 PGPEP1Q9NXJ5 209 aa10.03□□□□□ -0.8
CCDC88A-211ENST00000471947 LINC01549A6NIU2 74 aa10.03□□□□□ -0.8
CCDC88A-211ENST00000471947 MYMXA0A1B0GTQ4 84 aa10.02□□□□□ -0.81
CCDC88A-211ENST00000471947 CST9LQ9H4G1 147 aa10.02□□□□□ -0.81
CCDC88A-211ENST00000471947 H3BMG7 143 aa10.02□□□□□ -0.81
CCDC88A-211ENST00000471947 CRLF1O75462 422 aa10.02□□□□□ -0.81
CCDC88A-211ENST00000471947 MEIG1Q5JSS6 88 aa10.02□□□□□ -0.81
CCDC88A-211ENST00000471947 LINC00315P59091 139 aa10.02□□□□□ -0.81
CCDC88A-211ENST00000471947 BAHCC1Q9P281 2608 aa10.02□□□□□ -0.81
CCDC88A-211ENST00000471947 Q6ZUT4 128 aa10.01□□□□□ -0.81
CCDC88A-211ENST00000471947 SPATA3Q8NHX4 192 aa10.01□□□□□ -0.81
CCDC88A-211ENST00000471947 LINC00467Q9BRT7 94 aa10.01□□□□□ -0.81
CCDC88A-211ENST00000471947 FBN1P35555 2871 aaKnown RBP10.01□□□□□ -0.81
CCDC88A-211ENST00000471947 RPL36AP83881 106 aaKnown RBP10.01□□□□□ -0.81
CCDC88A-211ENST00000471947 RPL36ALQ969Q0 106 aaKnown RBP10.01□□□□□ -0.81
CCDC88A-211ENST00000471947 TMEM89A2RUT3 159 aa10□□□□□ -0.81
CCDC88A-211ENST00000471947 A8MWV9 139 aa10□□□□□ -0.81
CCDC88A-211ENST00000471947 SEC11AP67812 179 aa10□□□□□ -0.81
CCDC88A-211ENST00000471947 NEXN-AS1Q8NBZ9 246 aa10□□□□□ -0.81
CCDC88A-211ENST00000471947 PRB2P02812 416 aaPredicted RBP10□□□□□ -0.81
CCDC88A-211ENST00000471947 POLR2KP53803 58 aaKnown RBP10□□□□□ -0.81
CCDC88A-211ENST00000471947 CFAP126Q5VTH2 177 aa10□□□□□ -0.81
CCDC88A-211ENST00000471947 TEX29Q8N6K0 151 aa10□□□□□ -0.81
CCDC88A-211ENST00000471947 J3QQQ9 107 aa9.99□□□□□ -0.81
CCDC88A-211ENST00000471947 MORN3Q6PF18 240 aaPredicted RBP9.99□□□□□ -0.81
CCDC88A-211ENST00000471947 C9orf85Q96MD7 179 aa9.99□□□□□ -0.81
CCDC88A-211ENST00000471947 A0A1B0GV72 72 aa9.99□□□□□ -0.81
CCDC88A-211ENST00000471947 FSHBP01225 129 aa9.99□□□□□ -0.81
CCDC88A-211ENST00000471947 C1orf158Q8N1D5 194 aa9.99□□□□□ -0.81
CCDC88A-211ENST00000471947 KIF25-AS1Q9Y6Z4 181 aa9.99□□□□□ -0.81
CCDC88A-211ENST00000471947 C20orf203Q8NBC4 194 aa9.99□□□□□ -0.81
CCDC88A-211ENST00000471947 TSHBP01222 138 aa9.98□□□□□ -0.81
CCDC88A-211ENST00000471947 CEND1Q8N111 149 aa9.98□□□□□ -0.81
CCDC88A-211ENST00000471947 IGHV4-4A0A075B6R2 117 aa9.98□□□□□ -0.81
CCDC88A-211ENST00000471947 TIMM21Q9BVV7 248 aa9.98□□□□□ -0.81
CCDC88A-211ENST00000471947 PDZD2O15018 2839 aa9.97□□□□□ -0.81
CCDC88A-211ENST00000471947 IGLV10-54A0A075B6I4 117 aa9.97□□□□□ -0.81
CCDC88A-211ENST00000471947 TSPEAR-AS2P59090 65 aa9.97□□□□□ -0.81
CCDC88A-211ENST00000471947 C12orf74Q32Q52 190 aa9.97□□□□□ -0.81
CCDC88A-211ENST00000471947 TMEM141Q96I45 108 aa9.97□□□□□ -0.81
CCDC88A-211ENST00000471947 FAM19A4Q96LR4 140 aa9.97□□□□□ -0.81
CCDC88A-211ENST00000471947 SH2D6Q7Z4S9 175 aa9.96□□□□□ -0.81
CCDC88A-211ENST00000471947 SLC25A29Q8N8R3 303 aa9.96□□□□□ -0.81
CCDC88A-211ENST00000471947 C9orf118A6NHY6 69 aa9.96□□□□□ -0.81
CCDC88A-211ENST00000471947 ETDBQ3ZM63 59 aa9.96□□□□□ -0.81
CCDC88A-211ENST00000471947 A0A1B0GWB2 263 aa9.96□□□□□ -0.82
CCDC88A-211ENST00000471947 C5orf38Q86SI9 138 aa9.95□□□□□ -0.82
CCDC88A-211ENST00000471947 IGLV4-3A0A075B6K6 122 aa9.95□□□□□ -0.82
CCDC88A-211ENST00000471947 FAM110AQ9BQ89 295 aa9.95□□□□□ -0.82
CCDC88A-211ENST00000471947 LINC00694P0DN24 101 aa9.95□□□□□ -0.82
CCDC88A-211ENST00000471947 OR5A1Q8NGJ0 315 aa9.94□□□□□ -0.82
CCDC88A-211ENST00000471947 A0A1W2PPM0 123 aa9.94□□□□□ -0.82
CCDC88A-211ENST00000471947 F5H768 121 aa9.94□□□□□ -0.82
CCDC88A-211ENST00000471947 HILS1P60008 231 aa9.94□□□□□ -0.82
CCDC88A-211ENST00000471947 OXLD1Q5BKU9 147 aa9.94□□□□□ -0.82
CCDC88A-211ENST00000471947 POM121L12Q8N7R1 296 aa9.94□□□□□ -0.82
CCDC88A-211ENST00000471947 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.94□□□□□ -0.82
CCDC88A-211ENST00000471947 NDUFA12Q9UI09 145 aa9.94□□□□□ -0.82
CCDC88A-211ENST00000471947 CDKN2A-AS1Q9UH64 79 aa9.93□□□□□ -0.82
CCDC88A-211ENST00000471947 RNASE1P07998 156 aaKnown RBP9.93□□□□□ -0.82
CCDC88A-211ENST00000471947 PFN2P35080 140 aa9.93□□□□□ -0.82
CCDC88A-211ENST00000471947 TRBV27A0A0K0K1C4 114 aa9.93□□□□□ -0.82
CCDC88A-211ENST00000471947 IGIPA6NJ69 53 aa9.93□□□□□ -0.82
CCDC88A-211ENST00000471947 H3BRM9 83 aa9.93□□□□□ -0.82
CCDC88A-211ENST00000471947 MED14OSP0DP75 135 aa9.93□□□□□ -0.82
CCDC88A-211ENST00000471947 PAPPA-AS1Q5QFB9 102 aa9.93□□□□□ -0.82
CCDC88A-211ENST00000471947 MRAPQ8TCY5 172 aa9.93□□□□□ -0.82
CCDC88A-211ENST00000471947 KRTAP1-1Q07627 177 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms