RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 MRPL54Q6P161 138 aaKnown RBP13.34□□□□□ -0.27
COL9A3-202ENST00000452372 GAGE6Q13070 117 aa13.33□□□□□ -0.28
COL9A3-202ENST00000452372 ATRAIDQ6UW56 229 aa13.33□□□□□ -0.28
COL9A3-202ENST00000452372 ATP5L2Q7Z4Y8 100 aa13.33□□□□□ -0.28
COL9A3-202ENST00000452372 DEFB104AQ8WTQ1 72 aa13.33□□□□□ -0.28
COL9A3-202ENST00000452372 TMEM243Q9BU79 118 aa13.33□□□□□ -0.28
COL9A3-202ENST00000452372 RPS10P46783 165 aaKnown RBP13.32□□□□□ -0.28
COL9A3-202ENST00000452372 MRPL51Q4U2R6 128 aaKnown RBP13.32□□□□□ -0.28
COL9A3-202ENST00000452372 TM2D2Q9BX73 214 aa13.32□□□□□ -0.28
COL9A3-202ENST00000452372 ST20Q9HBF5 79 aa13.32□□□□□ -0.28
COL9A3-202ENST00000452372 PSCAO43653 123 aa13.31□□□□□ -0.28
COL9A3-202ENST00000452372 CDK2AP2O75956 126 aa13.31□□□□□ -0.28
COL9A3-202ENST00000452372 NCR2O95944 276 aa13.31□□□□□ -0.28
COL9A3-202ENST00000452372 PPP1R17O96001 155 aa13.31□□□□□ -0.28
COL9A3-202ENST00000452372 AMTP48728 403 aa13.31□□□□□ -0.28
COL9A3-202ENST00000452372 Q8N976 141 aa13.31□□□□□ -0.28
COL9A3-202ENST00000452372 UBE2WQ96B02 151 aa13.31□□□□□ -0.28
COL9A3-202ENST00000452372 TMEM70Q9BUB7 260 aa13.31□□□□□ -0.28
COL9A3-202ENST00000452372 A0A087WTM6 91 aa13.3□□□□□ -0.28
COL9A3-202ENST00000452372 SMKR1H3BMG3 65 aa13.3□□□□□ -0.28
COL9A3-202ENST00000452372 I3L3M4 83 aa13.3□□□□□ -0.28
COL9A3-202ENST00000452372 EREGO14944 169 aa13.3□□□□□ -0.28
COL9A3-202ENST00000452372 PMCHP20382 165 aa13.3□□□□□ -0.28
COL9A3-202ENST00000452372 POLR2KP53803 58 aaKnown RBP13.3□□□□□ -0.28
COL9A3-202ENST00000452372 RBX1P62877 108 aa13.3□□□□□ -0.28
COL9A3-202ENST00000452372 C10orf91Q5T1B1 145 aa13.3□□□□□ -0.28
COL9A3-202ENST00000452372 ANGP03950 147 aaKnown RBP13.29□□□□□ -0.28
COL9A3-202ENST00000452372 SPATA12Q7Z6I5 190 aa13.29□□□□□ -0.28
COL9A3-202ENST00000452372 NRACQ8N912 160 aa13.29□□□□□ -0.28
COL9A3-202ENST00000452372 CTDSP1Q9GZU7 261 aa13.29□□□□□ -0.28
COL9A3-202ENST00000452372 A0A1B0GUV1 79 aa13.28□□□□□ -0.28
COL9A3-202ENST00000452372 KRTAP10-2P60368 255 aa13.28□□□□□ -0.28
COL9A3-202ENST00000452372 Q0VG73 95 aa13.28□□□□□ -0.28
COL9A3-202ENST00000452372 RMI2Q96E14 147 aa13.28□□□□□ -0.28
COL9A3-202ENST00000452372 IMMP2LQ96T52 175 aa13.28□□□□□ -0.28
COL9A3-202ENST00000452372 COX11Q9Y6N1 276 aa13.28□□□□□ -0.28
COL9A3-202ENST00000452372 TRBV27A0A0K0K1C4 114 aa13.27□□□□□ -0.29
COL9A3-202ENST00000452372 LRCOL1A6NCL2 159 aa13.27□□□□□ -0.29
COL9A3-202ENST00000452372 UBE2L6O14933 153 aa13.27□□□□□ -0.29
COL9A3-202ENST00000452372 CKS2P33552 79 aa13.27□□□□□ -0.29
COL9A3-202ENST00000452372 ENHOQ6UWT2 76 aa13.27□□□□□ -0.29
COL9A3-202ENST00000452372 BTF3L4Q96K17 158 aa13.27□□□□□ -0.29
COL9A3-202ENST00000452372 TRBV24-1A0A075B6N3 115 aa13.26□□□□□ -0.29
COL9A3-202ENST00000452372 APCSP02743 223 aa13.26□□□□□ -0.29
COL9A3-202ENST00000452372 SUMO2P61956 95 aaKnown RBP13.26□□□□□ -0.29
COL9A3-202ENST00000452372 CARHSP1Q9Y2V2 147 aaKnown RBP13.26□□□□□ -0.29
COL9A3-202ENST00000452372 IGKV2D-24A0A075B6R9 120 aa13.25□□□□□ -0.29
COL9A3-202ENST00000452372 VCYO14598 125 aa13.25□□□□□ -0.29
COL9A3-202ENST00000452372 TSHBP01222 138 aa13.25□□□□□ -0.29
COL9A3-202ENST00000452372 CRPP02741 224 aa13.25□□□□□ -0.29
COL9A3-202ENST00000452372 PRR34Q9NV39 138 aa13.25□□□□□ -0.29
COL9A3-202ENST00000452372 H7C423 109 aa13.24□□□□□ -0.29
COL9A3-202ENST00000452372 PPBPP02775 128 aa13.24□□□□□ -0.29
COL9A3-202ENST00000452372 LINC00269Q8N2A0 174 aa13.24□□□□□ -0.29
COL9A3-202ENST00000452372 C20orf203Q8NBC4 194 aa13.24□□□□□ -0.29
COL9A3-202ENST00000452372 C20orf78Q9BR46 151 aa13.24□□□□□ -0.29
COL9A3-202ENST00000452372 PGPEP1Q9NXJ5 209 aa13.24□□□□□ -0.29
COL9A3-202ENST00000452372 IGLV4-60A0A075B6I1 120 aa13.23□□□□□ -0.29
COL9A3-202ENST00000452372 D6R8Y8 96 aa13.23□□□□□ -0.29
COL9A3-202ENST00000452372 MIAQ16674 131 aa13.23□□□□□ -0.29
COL9A3-202ENST00000452372 MAPKAPK5-AS1Q8N8E1 139 aa13.23□□□□□ -0.29
COL9A3-202ENST00000452372 TMEM242Q9NWH2 141 aa13.23□□□□□ -0.29
COL9A3-202ENST00000452372 C7orf77A4D0Y5 90 aa13.22□□□□□ -0.29
COL9A3-202ENST00000452372 TNFRSF6BO95407 300 aa13.22□□□□□ -0.29
COL9A3-202ENST00000452372 ESDP10768 282 aa13.22□□□□□ -0.29
COL9A3-202ENST00000452372 C1orf43Q9BWL3 253 aa13.22□□□□□ -0.29
COL9A3-202ENST00000452372 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.21□□□□□ -0.29
COL9A3-202ENST00000452372 TRAV9-1A0A075B6T8 112 aa13.21□□□□□ -0.29
COL9A3-202ENST00000452372 IGKV2-29A2NJV5 120 aaPredicted RBP13.21□□□□□ -0.29
COL9A3-202ENST00000452372 RPL32P62910 135 aaKnown RBP13.21□□□□□ -0.29
COL9A3-202ENST00000452372 REG3AQ06141 175 aa13.21□□□□□ -0.29
COL9A3-202ENST00000452372 CLRN3Q8NCR9 226 aa13.21□□□□□ -0.29
COL9A3-202ENST00000452372 PHOX2AO14813 284 aa13.2□□□□□ -0.3
COL9A3-202ENST00000452372 AMMECR1LQ6DCA0 310 aa13.2□□□□□ -0.3
COL9A3-202ENST00000452372 TMEM136Q6ZRR5 245 aa13.2□□□□□ -0.3
COL9A3-202ENST00000452372 ORMDL3Q8N138 153 aa13.2□□□□□ -0.3
COL9A3-202ENST00000452372 KIR2DL4Q99706 377 aa13.2□□□□□ -0.3
COL9A3-202ENST00000452372 FGF6P10767 208 aa13.19□□□□□ -0.3
COL9A3-202ENST00000452372 FCER1GP30273 86 aa13.19□□□□□ -0.3
COL9A3-202ENST00000452372 RHEBQ15382 184 aa13.19□□□□□ -0.3
COL9A3-202ENST00000452372 CDPF1Q6NVV7 123 aa13.19□□□□□ -0.3
COL9A3-202ENST00000452372 CLPSL2Q6UWE3 100 aa13.19□□□□□ -0.3
COL9A3-202ENST00000452372 Q8N1X5 172 aa13.19□□□□□ -0.3
COL9A3-202ENST00000452372 NPYP01303 97 aa13.18□□□□□ -0.3
COL9A3-202ENST00000452372 S100PP25815 95 aa13.18□□□□□ -0.3
COL9A3-202ENST00000452372 WFDC2Q14508 124 aa13.18□□□□□ -0.3
COL9A3-202ENST00000452372 RNASEKQ6P5S7 137 aaKnown RBP13.18□□□□□ -0.3
COL9A3-202ENST00000452372 Q8N814 137 aa13.18□□□□□ -0.3
COL9A3-202ENST00000452372 BAALCQ8WXS3 180 aa13.18□□□□□ -0.3
COL9A3-202ENST00000452372 ZNF25P17030 456 aaPredicted RBP13.17□□□□□ -0.3
COL9A3-202ENST00000452372 PRELID3AQ96N28 172 aa13.17□□□□□ -0.3
COL9A3-202ENST00000452372 RPS10P5Q9NQ39 176 aa13.17□□□□□ -0.3
COL9A3-202ENST00000452372 TRAV8-4A0A0B4J246 113 aa13.16□□□□□ -0.3
COL9A3-202ENST00000452372 TCAPO15273 167 aa13.16□□□□□ -0.3
COL9A3-202ENST00000452372 APOC3P02656 99 aa13.16□□□□□ -0.3
COL9A3-202ENST00000452372 FUSP35637 526 aaKnown RBP eCLIP13.16□□□□□ -0.3
COL9A3-202ENST00000452372 NTN5Q8WTR8 489 aaPredicted RBP13.16□□□□□ -0.3
COL9A3-202ENST00000452372 SMIM2Q9BVW6 85 aa13.16□□□□□ -0.3
COL9A3-202ENST00000452372 FAT1Q14517 4588 aa13.15□□□□□ -0.3
COL9A3-202ENST00000452372 LECT2O14960 151 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms