RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 TMEM70Q9BUB7 260 aa12.43□□□□□ -0.42
CKS1B-203ENST00000368439 C1orf43Q9BWL3 253 aa12.43□□□□□ -0.42
CKS1B-203ENST00000368439 VPS13BQ7Z7G8 4022 aa12.43□□□□□ -0.42
CKS1B-203ENST00000368439 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.42□□□□□ -0.42
CKS1B-203ENST00000368439 SMIM15Q7Z3B0 74 aa12.42□□□□□ -0.42
CKS1B-203ENST00000368439 LINC00269Q8N2A0 174 aa12.42□□□□□ -0.42
CKS1B-203ENST00000368439 C20orf203Q8NBC4 194 aa12.42□□□□□ -0.42
CKS1B-203ENST00000368439 FAM30AQ9NZY2 134 aa12.42□□□□□ -0.42
CKS1B-203ENST00000368439 A0A1B0GUT8 65 aa12.41□□□□□ -0.42
CKS1B-203ENST00000368439 A0A1B0GUV1 79 aa12.41□□□□□ -0.42
CKS1B-203ENST00000368439 COTL1Q14019 142 aa12.41□□□□□ -0.42
CKS1B-203ENST00000368439 PEA15Q15121 130 aa12.41□□□□□ -0.42
CKS1B-203ENST00000368439 SMDT1Q9H4I9 107 aa12.41□□□□□ -0.42
CKS1B-203ENST00000368439 NAT8Q9UHE5 227 aa12.41□□□□□ -0.42
CKS1B-203ENST00000368439 IGLV4-60A0A075B6I1 120 aa12.4□□□□□ -0.42
CKS1B-203ENST00000368439 GAS8-AS1O95177 125 aa12.4□□□□□ -0.42
CKS1B-203ENST00000368439 CLPSL2Q6UWE3 100 aa12.4□□□□□ -0.42
CKS1B-203ENST00000368439 RNF185Q96GF1 192 aa12.4□□□□□ -0.42
CKS1B-203ENST00000368439 TMEM191AQ9H0A3 160 aa12.4□□□□□ -0.42
CKS1B-203ENST00000368439 AMTP48728 403 aa12.39□□□□□ -0.43
CKS1B-203ENST00000368439 HAMPP81172 84 aa12.39□□□□□ -0.43
CKS1B-203ENST00000368439 Q6ZSA8 131 aa12.39□□□□□ -0.43
CKS1B-203ENST00000368439 NUP35Q8NFH5 326 aa12.39□□□□□ -0.43
CKS1B-203ENST00000368439 BORCS7Q96B45 105 aa12.39□□□□□ -0.43
CKS1B-203ENST00000368439 TRBV6-5A0A0K0K1A5 114 aa12.38□□□□□ -0.43
CKS1B-203ENST00000368439 REG3AQ06141 175 aa12.38□□□□□ -0.43
CKS1B-203ENST00000368439 ADIRFQ15847 76 aa12.38□□□□□ -0.43
CKS1B-203ENST00000368439 SDHAF1A6NFY7 115 aa12.37□□□□□ -0.43
CKS1B-203ENST00000368439 RAB4AP20338 218 aa12.37□□□□□ -0.43
CKS1B-203ENST00000368439 EPM2AB3EWF7 344 aa12.36□□□□□ -0.43
CKS1B-203ENST00000368439 NCR2O95944 276 aa12.36□□□□□ -0.43
CKS1B-203ENST00000368439 LINC01620Q4KN68 170 aa12.36□□□□□ -0.43
CKS1B-203ENST00000368439 SMIM27A0A1W2PRY6 76 aa12.35□□□□□ -0.43
CKS1B-203ENST00000368439 USP17L23D6RBM5 183 aa12.35□□□□□ -0.43
CKS1B-203ENST00000368439 HLA-DQA1P01909 254 aa12.35□□□□□ -0.43
CKS1B-203ENST00000368439 AMN1Q8IY45 258 aa12.35□□□□□ -0.43
CKS1B-203ENST00000368439 NAT8BQ9UHF3 227 aa12.35□□□□□ -0.43
CKS1B-203ENST00000368439 UBE2L6O14933 153 aa12.34□□□□□ -0.43
CKS1B-203ENST00000368439 SMR3BP02814 79 aaPredicted RBP12.34□□□□□ -0.43
CKS1B-203ENST00000368439 RPS10P46783 165 aaKnown RBP12.34□□□□□ -0.43
CKS1B-203ENST00000368439 RIGQ13278 110 aa12.34□□□□□ -0.43
CKS1B-203ENST00000368439 C14orf177Q52M58 125 aa12.34□□□□□ -0.43
CKS1B-203ENST00000368439 IGLV10-54A0A075B6I4 117 aa12.33□□□□□ -0.44
CKS1B-203ENST00000368439 TRAV8-4A0A0B4J246 113 aa12.33□□□□□ -0.44
CKS1B-203ENST00000368439 POLR2KP53803 58 aaKnown RBP12.33□□□□□ -0.44
CKS1B-203ENST00000368439 Q5VSD8 79 aa12.33□□□□□ -0.44
CKS1B-203ENST00000368439 MRAP2Q96G30 205 aa12.33□□□□□ -0.44
CKS1B-203ENST00000368439 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.32□□□□□ -0.44
CKS1B-203ENST00000368439 IGKV2-29A2NJV5 120 aaPredicted RBP12.32□□□□□ -0.44
CKS1B-203ENST00000368439 I3L3M4 83 aa12.32□□□□□ -0.44
CKS1B-203ENST00000368439 TSHBP01222 138 aa12.32□□□□□ -0.44
CKS1B-203ENST00000368439 APCSP02743 223 aa12.32□□□□□ -0.44
CKS1B-203ENST00000368439 PRSS1P07477 247 aa12.32□□□□□ -0.44
CKS1B-203ENST00000368439 ST20Q9HBF5 79 aa12.32□□□□□ -0.44
CKS1B-203ENST00000368439 H7C423 109 aa12.31□□□□□ -0.44
CKS1B-203ENST00000368439 PMCHP20382 165 aa12.31□□□□□ -0.44
CKS1B-203ENST00000368439 TRBV27A0A0K0K1C4 114 aa12.3□□□□□ -0.44
CKS1B-203ENST00000368439 SMKR1H3BMG3 65 aa12.3□□□□□ -0.44
CKS1B-203ENST00000368439 ESDP10768 282 aa12.3□□□□□ -0.44
CKS1B-203ENST00000368439 FGF6P10767 208 aa12.29□□□□□ -0.44
CKS1B-203ENST00000368439 NRACQ8N912 160 aa12.29□□□□□ -0.44
CKS1B-203ENST00000368439 TMEM242Q9NWH2 141 aa12.29□□□□□ -0.44
CKS1B-203ENST00000368439 FAM104BQ5XKR9 115 aa12.28□□□□□ -0.44
CKS1B-203ENST00000368439 MRPL51Q4U2R6 128 aaKnown RBP12.27□□□□□ -0.45
CKS1B-203ENST00000368439 AMMECR1LQ6DCA0 310 aa12.27□□□□□ -0.45
CKS1B-203ENST00000368439 DGAT2L7PQ6IED9 249 aa12.27□□□□□ -0.45
CKS1B-203ENST00000368439 SRRM2Q9UQ35 2752 aaKnown RBP12.26□□□□□ -0.45
CKS1B-203ENST00000368439 CAMPP49913 170 aa12.26□□□□□ -0.45
CKS1B-203ENST00000368439 RNASEKQ6P5S7 137 aaKnown RBP12.26□□□□□ -0.45
CKS1B-203ENST00000368439 A0A1B0GW15 77 aa12.25□□□□□ -0.45
CKS1B-203ENST00000368439 A0A1B0GXF2 115 aa12.25□□□□□ -0.45
CKS1B-203ENST00000368439 ZNF25P17030 456 aaPredicted RBP12.25□□□□□ -0.45
CKS1B-203ENST00000368439 SCXQ7RTU7 201 aa12.25□□□□□ -0.45
CKS1B-203ENST00000368439 CLRN3Q8NCR9 226 aa12.25□□□□□ -0.45
CKS1B-203ENST00000368439 FAM229AH3BQW9 127 aa12.24□□□□□ -0.45
CKS1B-203ENST00000368439 PPP1R17O96001 155 aa12.24□□□□□ -0.45
CKS1B-203ENST00000368439 RAB14P61106 215 aa12.24□□□□□ -0.45
CKS1B-203ENST00000368439 SUMO2P61956 95 aaKnown RBP12.24□□□□□ -0.45
CKS1B-203ENST00000368439 C9orf163Q8N9P6 203 aa12.24□□□□□ -0.45
CKS1B-203ENST00000368439 CHAC1Q9BUX1 264 aa12.24□□□□□ -0.45
CKS1B-203ENST00000368439 MYCBP2O75592 4640 aa12.23□□□□□ -0.45
CKS1B-203ENST00000368439 IGKV3OR2-268A0A0C4DH90 116 aa12.23□□□□□ -0.45
CKS1B-203ENST00000368439 GAGE12HA6NDE8 117 aa12.23□□□□□ -0.45
CKS1B-203ENST00000368439 VCYO14598 125 aa12.23□□□□□ -0.45
CKS1B-203ENST00000368439 INAFM2P0DMQ5 153 aa12.23□□□□□ -0.45
CKS1B-203ENST00000368439 CLLU1Q5K131 121 aa12.23□□□□□ -0.45
CKS1B-203ENST00000368439 MRPL54Q6P161 138 aaKnown RBP12.23□□□□□ -0.45
CKS1B-203ENST00000368439 MRPL52Q86TS9 123 aaKnown RBP12.23□□□□□ -0.45
CKS1B-203ENST00000368439 TRBV24-1A0A075B6N3 115 aa12.22□□□□□ -0.45
CKS1B-203ENST00000368439 LINC00862A6NCI5 91 aa12.22□□□□□ -0.45
CKS1B-203ENST00000368439 SLPIP03973 132 aa12.22□□□□□ -0.45
CKS1B-203ENST00000368439 CNBPP62633 177 aaKnown RBP12.22□□□□□ -0.45
CKS1B-203ENST00000368439 HBBP68871 147 aa12.22□□□□□ -0.45
CKS1B-203ENST00000368439 C15orf56Q8N910 161 aa12.22□□□□□ -0.45
CKS1B-203ENST00000368439 OR5A1Q8NGJ0 315 aa12.22□□□□□ -0.45
CKS1B-203ENST00000368439 CIRBP-AS1Q8TBR5 109 aa12.22□□□□□ -0.45
CKS1B-203ENST00000368439 CHCHD10Q8WYQ3 142 aaPredicted RBP12.22□□□□□ -0.45
CKS1B-203ENST00000368439 IFITM2Q01629 132 aa12.21□□□□□ -0.45
CKS1B-203ENST00000368439 CDC42SE2Q9NRR3 84 aa12.21□□□□□ -0.45
CKS1B-203ENST00000368439 hDV102S1A0JD36 115 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms