RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 AJUBAQ96IF1 538 aa10.7□□□□□ -0.7
CCDC88A-201ENST00000263630 WFDC10AQ9H1F0 79 aa10.7□□□□□ -0.7
CCDC88A-201ENST00000263630 PRSS33Q8NF86 280 aa10.7□□□□□ -0.7
CCDC88A-201ENST00000263630 SNURFQ9Y675 71 aa10.7□□□□□ -0.7
CCDC88A-201ENST00000263630 IBA57-AS1B1ANH7 110 aa10.7□□□□□ -0.7
CCDC88A-201ENST00000263630 MYCNOSP40205 109 aa10.7□□□□□ -0.7
CCDC88A-201ENST00000263630 LINC00269Q8N2A0 174 aa10.7□□□□□ -0.7
CCDC88A-201ENST00000263630 ZFAND3Q9H8U3 227 aa10.7□□□□□ -0.7
CCDC88A-201ENST00000263630 LOXL1Q08397 574 aaPredicted RBP10.69□□□□□ -0.7
CCDC88A-201ENST00000263630 IGLV11-55A0A075B6I3 123 aa10.69□□□□□ -0.7
CCDC88A-201ENST00000263630 SMIM26A0A096LP01 95 aa10.69□□□□□ -0.7
CCDC88A-201ENST00000263630 C3orf84H3BNL1 204 aa10.69□□□□□ -0.7
CCDC88A-201ENST00000263630 LYPD6BQ8NI32 183 aa10.69□□□□□ -0.7
CCDC88A-201ENST00000263630 WDR90Q96KV7 1748 aa10.69□□□□□ -0.7
CCDC88A-201ENST00000263630 TMEM223A0PJW6 202 aa10.68□□□□□ -0.7
CCDC88A-201ENST00000263630 P0DMU3 169 aa10.68□□□□□ -0.7
CCDC88A-201ENST00000263630 FAM231AP0DMU4 169 aa10.68□□□□□ -0.7
CCDC88A-201ENST00000263630 FAM231CP0DMU5 169 aa10.68□□□□□ -0.7
CCDC88A-201ENST00000263630 HILS1P60008 231 aa10.68□□□□□ -0.7
CCDC88A-201ENST00000263630 Q6ZR03 302 aa10.68□□□□□ -0.7
CCDC88A-201ENST00000263630 ODF3L1Q8IXM7 274 aa10.68□□□□□ -0.7
CCDC88A-201ENST00000263630 SMIM9A6NGZ8 99 aa10.68□□□□□ -0.7
CCDC88A-201ENST00000263630 MT-ATP8P03928 68 aa10.68□□□□□ -0.7
CCDC88A-201ENST00000263630 A0A0J9YXY3 114 aa10.67□□□□□ -0.7
CCDC88A-201ENST00000263630 C17orf82Q86X59 251 aaPredicted RBP10.67□□□□□ -0.7
CCDC88A-201ENST00000263630 I3L2K1 104 aa10.67□□□□□ -0.7
CCDC88A-201ENST00000263630 LRRC75A-AS1Q8N1F1 130 aa10.67□□□□□ -0.7
CCDC88A-201ENST00000263630 SPINK6Q6UWN8 80 aa10.67□□□□□ -0.7
CCDC88A-201ENST00000263630 C20orf203Q8NBC4 194 aa10.67□□□□□ -0.7
CCDC88A-201ENST00000263630 C5orf56Q8N8D9 126 aa10.67□□□□□ -0.7
CCDC88A-201ENST00000263630 VWCEQ96DN2 955 aa10.66□□□□□ -0.7
CCDC88A-201ENST00000263630 IGHV7-81A0A0B4J1V7 117 aa10.66□□□□□ -0.7
CCDC88A-201ENST00000263630 IGHV4-30-4P0DP06 118 aa10.66□□□□□ -0.7
CCDC88A-201ENST00000263630 IGHV4-31P0DP07 118 aa10.66□□□□□ -0.7
CCDC88A-201ENST00000263630 SONP18583 2426 aaKnown RBP10.66□□□□□ -0.7
CCDC88A-201ENST00000263630 DIAPH2-AS1Q14236 149 aa10.66□□□□□ -0.7
CCDC88A-201ENST00000263630 CSDC2Q9Y534 153 aaKnown RBP10.66□□□□□ -0.7
CCDC88A-201ENST00000263630 SIRPDQ9H106 197 aa10.65□□□□□ -0.7
CCDC88A-201ENST00000263630 COX7CP15954 63 aa10.65□□□□□ -0.7
CCDC88A-201ENST00000263630 PTPN13Q12923 2485 aa10.65□□□□□ -0.7
CCDC88A-201ENST00000263630 K7EIM0 57 aa10.65□□□□□ -0.7
CCDC88A-201ENST00000263630 IGHV4-38-2P0DP08 117 aa10.65□□□□□ -0.7
CCDC88A-201ENST00000263630 LINC00173Q6ZV60 143 aa10.65□□□□□ -0.71
CCDC88A-201ENST00000263630 PCNX3Q9H6A9 2034 aa10.65□□□□□ -0.71
CCDC88A-201ENST00000263630 LINC00474Q9P2X8 69 aa10.65□□□□□ -0.71
CCDC88A-201ENST00000263630 CHCHD10Q8WYQ3 142 aaPredicted RBP10.64□□□□□ -0.71
CCDC88A-201ENST00000263630 LINC00322Q6ZN03 302 aaPredicted RBP10.64□□□□□ -0.71
CCDC88A-201ENST00000263630 ALPK3Q96L96 1907 aa10.64□□□□□ -0.71
CCDC88A-201ENST00000263630 TDRG1Q3Y452 100 aa10.64□□□□□ -0.71
CCDC88A-201ENST00000263630 TRBV30A0A0K0K1B3 111 aa10.63□□□□□ -0.71
CCDC88A-201ENST00000263630 MSRB1Q9NZV6 116 aa10.63□□□□□ -0.71
CCDC88A-201ENST00000263630 TRBV7-6A0A0J9YX20 115 aa10.63□□□□□ -0.71
CCDC88A-201ENST00000263630 A0A1B0GXF2 115 aa10.63□□□□□ -0.71
CCDC88A-201ENST00000263630 FAM19A5Q7Z5A7 132 aaPredicted RBP10.63□□□□□ -0.71
CCDC88A-201ENST00000263630 C10orf25Q5T742 122 aa10.63□□□□□ -0.71
CCDC88A-201ENST00000263630 MIFP14174 115 aa10.63□□□□□ -0.71
CCDC88A-201ENST00000263630 ODF3Q96PU9 254 aa10.63□□□□□ -0.71
CCDC88A-201ENST00000263630 ZNF524Q96C55 264 aa10.62□□□□□ -0.71
CCDC88A-201ENST00000263630 LINC01548A6NM66 108 aa10.62□□□□□ -0.71
CCDC88A-201ENST00000263630 FAM208BQ5VWN6 2430 aa10.62□□□□□ -0.71
CCDC88A-201ENST00000263630 WFDC13Q8IUB5 93 aa10.62□□□□□ -0.71
CCDC88A-201ENST00000263630 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.61□□□□□ -0.71
CCDC88A-201ENST00000263630 DEFB4AO15263 64 aa10.61□□□□□ -0.71
CCDC88A-201ENST00000263630 COX17Q14061 63 aa10.61□□□□□ -0.71
CCDC88A-201ENST00000263630 FAM30AQ9NZY2 134 aa10.61□□□□□ -0.71
CCDC88A-201ENST00000263630 HIVEP2P31629 2446 aa10.6□□□□□ -0.71
CCDC88A-201ENST00000263630 NRACQ8N912 160 aa10.59□□□□□ -0.71
CCDC88A-201ENST00000263630 LY6LH3BQJ8 138 aa10.59□□□□□ -0.71
CCDC88A-201ENST00000263630 CDPF1Q6NVV7 123 aa10.59□□□□□ -0.71
CCDC88A-201ENST00000263630 HRCT1Q6UXD1 115 aa10.59□□□□□ -0.71
CCDC88A-201ENST00000263630 LINC00308Q8TCZ7 52 aa10.59□□□□□ -0.71
CCDC88A-201ENST00000263630 IGHV4-61A0A0C4DH41 118 aa10.59□□□□□ -0.71
CCDC88A-201ENST00000263630 SERTAD4-AS1Q5TG53 156 aa10.59□□□□□ -0.71
CCDC88A-201ENST00000263630 SLPIP03973 132 aa10.58□□□□□ -0.72
CCDC88A-201ENST00000263630 TRAV7A0A075B6U4 112 aa10.58□□□□□ -0.72
CCDC88A-201ENST00000263630 A0A0J9YX75 114 aa10.58□□□□□ -0.72
CCDC88A-201ENST00000263630 DEFB131BA0A096LNP1 70 aa10.57□□□□□ -0.72
CCDC88A-201ENST00000263630 M0R378 163 aa10.57□□□□□ -0.72
CCDC88A-201ENST00000263630 TRIAP1O43715 76 aa10.57□□□□□ -0.72
CCDC88A-201ENST00000263630 MUC7Q8TAX7 377 aa10.57□□□□□ -0.72
CCDC88A-201ENST00000263630 CTSZQ9UBR2 303 aa10.57□□□□□ -0.72
CCDC88A-201ENST00000263630 SLX1AQ9BQ83 275 aa10.57□□□□□ -0.72
CCDC88A-201ENST00000263630 TRBV6-5A0A0K0K1A5 114 aa10.56□□□□□ -0.72
CCDC88A-201ENST00000263630 EBI3Q14213 229 aa10.56□□□□□ -0.72
CCDC88A-201ENST00000263630 SYCNQ0VAF6 134 aa10.56□□□□□ -0.72
CCDC88A-201ENST00000263630 IGF1P05019 195 aa10.56□□□□□ -0.72
CCDC88A-201ENST00000263630 CFAP126Q5VTH2 177 aa10.56□□□□□ -0.72
CCDC88A-201ENST00000263630 X6R8D5 127 aa10.56□□□□□ -0.72
CCDC88A-201ENST00000263630 LY6G6EA0A0G2JKS1 128 aa10.56□□□□□ -0.72
CCDC88A-201ENST00000263630 MAP6D1Q9H9H5 199 aa10.56□□□□□ -0.72
CCDC88A-201ENST00000263630 LINC00467Q9BRT7 94 aa10.55□□□□□ -0.72
CCDC88A-201ENST00000263630 C6orf99Q4VX62 202 aa10.55□□□□□ -0.72
CCDC88A-201ENST00000263630 C1orf147Q96MC9 270 aaPredicted RBP10.55□□□□□ -0.72
CCDC88A-201ENST00000263630 FAM167A-AS1Q96KT0 104 aa10.55□□□□□ -0.72
CCDC88A-201ENST00000263630 ESRGQ1W209 222 aa10.55□□□□□ -0.72
CCDC88A-201ENST00000263630 PTPRBP23467 1997 aa10.55□□□□□ -0.72
CCDC88A-201ENST00000263630 RAI1Q7Z5J4 1906 aaPredicted RBP10.55□□□□□ -0.72
CCDC88A-201ENST00000263630 TTTY13Q9BZ97 58 aa10.55□□□□□ -0.72
CCDC88A-201ENST00000263630 IGLV9-49A0A0B4J1Y8 123 aa10.55□□□□□ -0.72
CCDC88A-201ENST00000263630 CCDC140Q96MF4 163 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 211.3 ms