RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 LCN15Q6UWW0 184 aa1.45□□□□□ -2.18
SCFD1-219ENST00000556413 DPPA3Q6W0C5 159 aa1.45□□□□□ -2.18
SCFD1-219ENST00000556413 EIF4E3Q8N5X7 224 aaKnown RBP1.45□□□□□ -2.18
SCFD1-219ENST00000556413 ZFAND2AQ8N6M9 145 aa1.45□□□□□ -2.18
SCFD1-219ENST00000556413 LINC00304Q8N9R0 145 aa1.45□□□□□ -2.18
SCFD1-219ENST00000556413 CIRBP-AS1Q8TBR5 109 aa1.45□□□□□ -2.18
SCFD1-219ENST00000556413 DIRAS2Q96HU8 199 aa1.45□□□□□ -2.18
SCFD1-219ENST00000556413 HYLS1Q96M11 299 aa1.45□□□□□ -2.18
SCFD1-219ENST00000556413 BCL7BQ9BQE9 202 aa1.45□□□□□ -2.18
SCFD1-219ENST00000556413 SLC25A2Q9BXI2 301 aa1.45□□□□□ -2.18
SCFD1-219ENST00000556413 AGPAT4-IT1Q9H0P7 198 aa1.45□□□□□ -2.18
SCFD1-219ENST00000556413 Q9H521 79 aa1.45□□□□□ -2.18
SCFD1-219ENST00000556413 SHPKQ9UHJ6 478 aa1.45□□□□□ -2.18
SCFD1-219ENST00000556413 RABL2BQ9UNT1 228 aa1.45□□□□□ -2.18
SCFD1-219ENST00000556413 PSG8Q9UQ74 426 aa1.45□□□□□ -2.18
SCFD1-219ENST00000556413 HHLA3Q9XRX5 114 aa1.45□□□□□ -2.18
SCFD1-219ENST00000556413 TRBV19A0A075B6N1 114 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 A0A087WXM4 84 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 MUC21A0A0G2JKD1 596 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 ANKRD20A5PA0PJZ0 165 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 IGSF23A1L1A6 192 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 C9orf170A2RU37 121 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 RBFOX3A6NFN3 312 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 GOSR2O14653 212 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 HMGB3O15347 200 aaKnown RBP1.44□□□□□ -2.18
SCFD1-219ENST00000556413 MPDU1O75352 247 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 HLA-DQA1P01909 254 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 TYMSP04818 313 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 GPX1P07203 203 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 FGF7P21781 194 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 DEFA1P59665 94 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 B2MP61769 119 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 MRPL23Q16540 153 aaKnown RBP1.44□□□□□ -2.18
SCFD1-219ENST00000556413 IAH1Q2TAA2 248 aaPredicted RBP1.44□□□□□ -2.18
SCFD1-219ENST00000556413 UQCC3Q6UW78 93 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 TMEM256Q8N2U0 113 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 OR4C5Q8NGB2 326 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 OR2T35Q8NGX2 323 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 UBE2WQ96B02 151 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 GPR82Q96P67 336 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 PRRT1Q99946 306 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 SEC22CQ9BRL7 303 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 SLC50A1Q9BRV3 221 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 TMEM70Q9BUB7 260 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 SAMD10Q9BYL1 202 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 SMIM3Q9BZL3 60 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 VCX2Q9H322 139 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 PRO0255Q9UI72 69 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 TIMM9Q9Y5J7 89 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 PXMP4Q9Y6I8 212 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 V9GYH0 126 aa1.44□□□□□ -2.18
SCFD1-219ENST00000556413 TRAV6A0A075B6T7 132 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 TMSB15BA0A087X1C1 80 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 MUC21A0A140T8X8 626 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 GRIFINA4D1Z8 144 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 FABP12A6NFH5 140 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 A8MUU9 505 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 K7EPK0 472 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 L7N2F9 121 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 PPP1R2P9O14990 202 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 OR7C2O60412 319 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 SIX6O95475 246 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 C1QBP02746 253 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 SLC25A5P05141 298 aaKnown RBP1.43□□□□□ -2.18
SCFD1-219ENST00000556413 RAB5CP51148 216 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 ZNF80P51504 273 aaPredicted RBP1.43□□□□□ -2.18
SCFD1-219ENST00000556413 RANP62826 216 aaKnown RBP1.43□□□□□ -2.18
SCFD1-219ENST00000556413 ZNF846Q147U1 533 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 SURF2Q15527 256 aaPredicted RBP1.43□□□□□ -2.18
SCFD1-219ENST00000556413 TMEM78Q5T7P6 136 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 TMEM14EPQ6UXP3 125 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 Q6ZSA8 131 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 GOLT1AQ6ZVE7 132 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 BPIFA4PQ86YQ2 179 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 SLC25A29Q8N8R3 303 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 ZNF680Q8NEM1 530 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 LYPD6BQ8NI32 183 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 AP3S1Q92572 193 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 TVP23CQ96ET8 276 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 FAM167A-AS1Q96KT0 104 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 FAM19A4Q96LR4 140 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 CIB3Q96Q77 187 aaPredicted RBP1.43□□□□□ -2.18
SCFD1-219ENST00000556413 MRPL32Q9BYC8 188 aaKnown RBP1.43□□□□□ -2.18
SCFD1-219ENST00000556413 SRRQ9GZT4 340 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 VCX3AQ9NNX9 186 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 SLC39A9Q9NUM3 307 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 ZNF492Q9P255 531 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 SCP2D1Q9UJQ7 156 aa1.43□□□□□ -2.18
SCFD1-219ENST00000556413 IGLV10-54A0A075B6I4 117 aa1.42□□□□□ -2.18
SCFD1-219ENST00000556413 TRAV8-6A0A0B4J262 113 aa1.42□□□□□ -2.18
SCFD1-219ENST00000556413 TRAV4A0A0B4J268 109 aa1.42□□□□□ -2.18
SCFD1-219ENST00000556413 IGKV2-24A0A0C4DH68 120 aa1.42□□□□□ -2.18
SCFD1-219ENST00000556413 CCDC160A6NGH7 325 aa1.42□□□□□ -2.18
SCFD1-219ENST00000556413 IBA57-AS1B1ANH7 110 aa1.42□□□□□ -2.18
SCFD1-219ENST00000556413 H3BNG1 76 aa1.42□□□□□ -2.18
SCFD1-219ENST00000556413 H3BVH4 76 aa1.42□□□□□ -2.18
SCFD1-219ENST00000556413 M0R036 132 aa1.42□□□□□ -2.18
SCFD1-219ENST00000556413 SLC25A6P12236 298 aa1.42□□□□□ -2.18
SCFD1-219ENST00000556413 CXCL2P19875 107 aa1.42□□□□□ -2.18
SCFD1-219ENST00000556413 ZNF138P52744 262 aa1.42□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms