RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 ARL14EPLP0DKL9 152 aa8.69□□□□□ -1.02
VPS29-209ENST00000551655 RAB2AP61019 212 aa8.69□□□□□ -1.02
VPS29-209ENST00000551655 IQCJQ1A5X6 159 aa8.69□□□□□ -1.02
VPS29-209ENST00000551655 SAPCD1Q5SSQ6 148 aa8.69□□□□□ -1.02
VPS29-209ENST00000551655 ZFP82Q8N141 532 aa8.69□□□□□ -1.02
VPS29-209ENST00000551655 SUN5Q8TC36 379 aa8.69□□□□□ -1.02
VPS29-209ENST00000551655 IGKV3OR2-268A0A0C4DH90 116 aa8.68□□□□□ -1.02
VPS29-209ENST00000551655 MT-ND6P03923 174 aa8.68□□□□□ -1.02
VPS29-209ENST00000551655 GZMBP10144 247 aa8.68□□□□□ -1.02
VPS29-209ENST00000551655 DEFA3P59666 94 aa8.68□□□□□ -1.02
VPS29-209ENST00000551655 SUMO1P63165 101 aaKnown RBP8.68□□□□□ -1.02
VPS29-209ENST00000551655 C1orf137Q5JT78 98 aa8.68□□□□□ -1.02
VPS29-209ENST00000551655 CFAP161Q6P656 301 aa8.68□□□□□ -1.02
VPS29-209ENST00000551655 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.68□□□□□ -1.02
VPS29-209ENST00000551655 LINC00474Q9P2X8 69 aa8.68□□□□□ -1.02
VPS29-209ENST00000551655 EPDR1Q9UM22 224 aa8.68□□□□□ -1.02
VPS29-209ENST00000551655 IGHV1-24A0A0C4DH33 117 aa8.67□□□□□ -1.02
VPS29-209ENST00000551655 A0A1W2PNN7 141 aa8.67□□□□□ -1.02
VPS29-209ENST00000551655 A0A1W2PPV4 95 aa8.67□□□□□ -1.02
VPS29-209ENST00000551655 SH2D1AO60880 128 aa8.67□□□□□ -1.02
VPS29-209ENST00000551655 SULT1A2P50226 295 aa8.67□□□□□ -1.02
VPS29-209ENST00000551655 TMEM97Q5BJF2 176 aa8.67□□□□□ -1.02
VPS29-209ENST00000551655 TRIQKQ629K1 86 aa8.67□□□□□ -1.02
VPS29-209ENST00000551655 TRAV6A0A075B6T7 132 aa8.66□□□□□ -1.02
VPS29-209ENST00000551655 GVQW2A0A096LPI5 108 aaPredicted RBP8.66□□□□□ -1.02
VPS29-209ENST00000551655 H0YIZ8 118 aa8.66□□□□□ -1.02
VPS29-209ENST00000551655 LRRC37A5PQ49AS3 106 aa8.66□□□□□ -1.02
VPS29-209ENST00000551655 AQP10Q96PS8 301 aa8.66□□□□□ -1.02
VPS29-209ENST00000551655 SMIM3Q9BZL3 60 aa8.66□□□□□ -1.02
VPS29-209ENST00000551655 MUC21A0A140T8X8 626 aa8.65□□□□□ -1.02
VPS29-209ENST00000551655 F5H697 171 aa8.65□□□□□ -1.02
VPS29-209ENST00000551655 TSPAN13O95857 204 aa8.65□□□□□ -1.02
VPS29-209ENST00000551655 KRTAP1-4P0C5Y4 121 aa8.65□□□□□ -1.02
VPS29-209ENST00000551655 TMBIM6P55061 237 aa8.65□□□□□ -1.02
VPS29-209ENST00000551655 Q86TA4 180 aa8.65□□□□□ -1.02
VPS29-209ENST00000551655 FER1L6-AS1Q8NA97 138 aa8.65□□□□□ -1.02
VPS29-209ENST00000551655 OR10AG1Q8NH19 301 aa8.65□□□□□ -1.02
VPS29-209ENST00000551655 SIX6O95475 246 aa8.64□□□□□ -1.03
VPS29-209ENST00000551655 DIRC1Q969H9 104 aa8.64□□□□□ -1.03
VPS29-209ENST00000551655 SDHCQ99643 169 aaPredicted RBP8.64□□□□□ -1.03
VPS29-209ENST00000551655 IGLV1-50A0A075B6I6 118 aa8.63□□□□□ -1.03
VPS29-209ENST00000551655 A0A1B0GUV1 79 aa8.63□□□□□ -1.03
VPS29-209ENST00000551655 H0Y9J4 135 aa8.63□□□□□ -1.03
VPS29-209ENST00000551655 GCHFRP30047 84 aa8.63□□□□□ -1.03
VPS29-209ENST00000551655 PHF5AQ7RTV0 110 aaKnown RBP8.63□□□□□ -1.03
VPS29-209ENST00000551655 IGLV7-43P04211 117 aa8.62□□□□□ -1.03
VPS29-209ENST00000551655 S100A5P33763 92 aa8.62□□□□□ -1.03
VPS29-209ENST00000551655 AMTP48728 403 aa8.62□□□□□ -1.03
VPS29-209ENST00000551655 PTTG1IPP53801 180 aa8.62□□□□□ -1.03
VPS29-209ENST00000551655 SSTP61278 116 aa8.62□□□□□ -1.03
VPS29-209ENST00000551655 CYCSP99999 105 aaKnown RBP8.62□□□□□ -1.03
VPS29-209ENST00000551655 GAGE2BQ13066 116 aa8.62□□□□□ -1.03
VPS29-209ENST00000551655 SCGB1C1Q8TD33 95 aa8.62□□□□□ -1.03
VPS29-209ENST00000551655 CHCHD10Q8WYQ3 142 aaPredicted RBP8.62□□□□□ -1.03
VPS29-209ENST00000551655 CARD19Q96LW7 228 aa8.62□□□□□ -1.03
VPS29-209ENST00000551655 TMEM243Q9BU79 118 aa8.62□□□□□ -1.03
VPS29-209ENST00000551655 CENPXA8MT69 81 aa8.61□□□□□ -1.03
VPS29-209ENST00000551655 STAG3L2P0CL84 134 aa8.61□□□□□ -1.03
VPS29-209ENST00000551655 STAG3L3P0CL85 134 aa8.61□□□□□ -1.03
VPS29-209ENST00000551655 WFDC1Q9HC57 220 aa8.61□□□□□ -1.03
VPS29-209ENST00000551655 CDC34P49427 236 aaPredicted RBP8.6□□□□□ -1.03
VPS29-209ENST00000551655 UBE2D1P51668 147 aa8.6□□□□□ -1.03
VPS29-209ENST00000551655 FAM162BQ5T6X4 162 aa8.6□□□□□ -1.03
VPS29-209ENST00000551655 KRTAP11-1Q8IUC1 163 aa8.6□□□□□ -1.03
VPS29-209ENST00000551655 ZNF471Q9BX82 626 aaPredicted RBP8.6□□□□□ -1.03
VPS29-209ENST00000551655 RBM38Q9H0Z9 239 aaKnown RBP8.6□□□□□ -1.03
VPS29-209ENST00000551655 NUDT15Q9NV35 164 aa8.6□□□□□ -1.03
VPS29-209ENST00000551655 PLA2G10O15496 165 aa8.59□□□□□ -1.03
VPS29-209ENST00000551655 RPL12P30050 165 aaKnown RBP8.59□□□□□ -1.03
VPS29-209ENST00000551655 HSPB11Q9Y547 144 aa8.59□□□□□ -1.03
VPS29-209ENST00000551655 NOL3O60936 208 aaKnown RBP8.58□□□□□ -1.04
VPS29-209ENST00000551655 FOXI1Q12951 378 aa8.58□□□□□ -1.04
VPS29-209ENST00000551655 C9orf116Q5BN46 136 aaPredicted RBP8.58□□□□□ -1.04
VPS29-209ENST00000551655 RAB24Q969Q5 203 aa8.58□□□□□ -1.04
VPS29-209ENST00000551655 TRAV1-1A0A0B4J248 108 aa8.57□□□□□ -1.04
VPS29-209ENST00000551655 PEX7O00628 323 aa8.57□□□□□ -1.04
VPS29-209ENST00000551655 BCL2P10415 239 aa8.57□□□□□ -1.04
VPS29-209ENST00000551655 IL7P13232 177 aa8.57□□□□□ -1.04
VPS29-209ENST00000551655 NKX2-5P52952 324 aaPredicted RBP8.57□□□□□ -1.04
VPS29-209ENST00000551655 ZNF674Q2M3X9 581 aa8.57□□□□□ -1.04
VPS29-209ENST00000551655 CNPY1Q3B7I2 92 aa8.57□□□□□ -1.04
VPS29-209ENST00000551655 UBE2L6O14933 153 aa8.56□□□□□ -1.04
VPS29-209ENST00000551655 PKIGQ9Y2B9 76 aa8.56□□□□□ -1.04
VPS29-209ENST00000551655 M0QY20 66 aa8.55□□□□□ -1.04
VPS29-209ENST00000551655 LYRM1O43325 122 aa8.55□□□□□ -1.04
VPS29-209ENST00000551655 MGPP08493 103 aa8.55□□□□□ -1.04
VPS29-209ENST00000551655 UBE2G2P60604 165 aa8.55□□□□□ -1.04
VPS29-209ENST00000551655 SRSF3P84103 164 aaKnown RBP8.55□□□□□ -1.04
VPS29-209ENST00000551655 SYCNQ0VAF6 134 aa8.55□□□□□ -1.04
VPS29-209ENST00000551655 LOC107984640A0A0U1RRK4 108 aa8.54□□□□□ -1.04
VPS29-209ENST00000551655 EIF5AP63241 154 aaKnown RBP8.54□□□□□ -1.04
VPS29-209ENST00000551655 SPANXN1Q5VSR9 72 aa8.54□□□□□ -1.04
VPS29-209ENST00000551655 SUMO4Q6EEV6 95 aa8.54□□□□□ -1.04
VPS29-209ENST00000551655 COX8CQ7Z4L0 72 aa8.54□□□□□ -1.04
VPS29-209ENST00000551655 RETNLBQ9BQ08 111 aa8.54□□□□□ -1.04
VPS29-209ENST00000551655 A0A087WZ39 114 aa8.53□□□□□ -1.04
VPS29-209ENST00000551655 A6NHS1 94 aa8.53□□□□□ -1.04
VPS29-209ENST00000551655 H2AFB2P0C5Z0 115 aa8.53□□□□□ -1.04
VPS29-209ENST00000551655 RPL13AP40429 203 aaKnown RBP8.53□□□□□ -1.04
VPS29-209ENST00000551655 XCL1P47992 114 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 146.5 ms