RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 GAGE5Q13069 117 aa13.57□□□□□ -0.24
USP39-218ENST00000493829 GAGE13Q4V321 117 aa13.57□□□□□ -0.24
USP39-218ENST00000493829 OR10J3Q5JRS4 329 aa13.57□□□□□ -0.24
USP39-218ENST00000493829 VSIG2Q96IQ7 327 aa13.57□□□□□ -0.24
USP39-218ENST00000493829 PRELID3AQ96N28 172 aa13.57□□□□□ -0.24
USP39-218ENST00000493829 PRADC1Q9BSG0 188 aa13.57□□□□□ -0.24
USP39-218ENST00000493829 NPYP01303 97 aa13.56□□□□□ -0.24
USP39-218ENST00000493829 GYPEP15421 78 aa13.56□□□□□ -0.24
USP39-218ENST00000493829 NEXN-AS1Q8NBZ9 246 aa13.56□□□□□ -0.24
USP39-218ENST00000493829 SRIP30626 198 aa13.56□□□□□ -0.24
USP39-218ENST00000493829 NRACQ8N912 160 aa13.56□□□□□ -0.24
USP39-218ENST00000493829 A0A096LPF7 62 aa13.55□□□□□ -0.24
USP39-218ENST00000493829 TNFRSF6BO95407 300 aa13.54□□□□□ -0.24
USP39-218ENST00000493829 PPBPP02775 128 aa13.54□□□□□ -0.24
USP39-218ENST00000493829 ZNRF2Q8NHG8 242 aa13.54□□□□□ -0.24
USP39-218ENST00000493829 DEFB104AQ8WTQ1 72 aa13.54□□□□□ -0.24
USP39-218ENST00000493829 IGLL5B9A064 214 aa13.53□□□□□ -0.24
USP39-218ENST00000493829 ZFAND6Q6FIF0 208 aa13.53□□□□□ -0.24
USP39-218ENST00000493829 NEGR1Q7Z3B1 354 aa13.53□□□□□ -0.24
USP39-218ENST00000493829 NIT2Q9NQR4 276 aa13.53□□□□□ -0.24
USP39-218ENST00000493829 TNFRSF18Q9Y5U5 241 aa13.53□□□□□ -0.24
USP39-218ENST00000493829 NUDT3O95989 172 aa13.53□□□□□ -0.24
USP39-218ENST00000493829 ALKBH7Q9BT30 221 aaPredicted RBP13.53□□□□□ -0.24
USP39-218ENST00000493829 IGHV3-38A0A0C4DH36 116 aa13.52□□□□□ -0.25
USP39-218ENST00000493829 TRBV10-1A0A0K0K1A3 114 aa13.52□□□□□ -0.25
USP39-218ENST00000493829 RPL36AP83881 106 aaKnown RBP13.52□□□□□ -0.25
USP39-218ENST00000493829 RPL36ALQ969Q0 106 aaKnown RBP13.52□□□□□ -0.25
USP39-218ENST00000493829 LOC389332A0A1B0GUA5 103 aa13.51□□□□□ -0.25
USP39-218ENST00000493829 ST20Q9HBF5 79 aa13.51□□□□□ -0.25
USP39-218ENST00000493829 TRBV7-3A0A075B6L6 115 aa13.5□□□□□ -0.25
USP39-218ENST00000493829 PHOX2AO14813 284 aa13.5□□□□□ -0.25
USP39-218ENST00000493829 IQCJQ1A5X6 159 aa13.5□□□□□ -0.25
USP39-218ENST00000493829 WWC2-AS2Q96NR7 200 aa13.5□□□□□ -0.25
USP39-218ENST00000493829 ICOSQ9Y6W8 199 aa13.5□□□□□ -0.25
USP39-218ENST00000493829 SUMO2P61956 95 aaKnown RBP13.5□□□□□ -0.25
USP39-218ENST00000493829 CEMP1Q6PRD7 247 aaPredicted RBP13.5□□□□□ -0.25
USP39-218ENST00000493829 NUPR2A6NF83 97 aa13.49□□□□□ -0.25
USP39-218ENST00000493829 SDHAF1A6NFY7 115 aa13.49□□□□□ -0.25
USP39-218ENST00000493829 DNAJC30Q96LL9 226 aa13.49□□□□□ -0.25
USP39-218ENST00000493829 PPP1R17O96001 155 aa13.48□□□□□ -0.25
USP39-218ENST00000493829 UBE2D3P61077 147 aa13.48□□□□□ -0.25
USP39-218ENST00000493829 UBE2D2P62837 147 aa13.48□□□□□ -0.25
USP39-218ENST00000493829 MUC7Q8TAX7 377 aa13.48□□□□□ -0.25
USP39-218ENST00000493829 MAP1LC3AQ9H492 121 aa13.48□□□□□ -0.25
USP39-218ENST00000493829 TRBV6-5A0A0K0K1A5 114 aa13.47□□□□□ -0.25
USP39-218ENST00000493829 LINC00694P0DN24 101 aa13.47□□□□□ -0.25
USP39-218ENST00000493829 TMEM70Q9BUB7 260 aa13.47□□□□□ -0.25
USP39-218ENST00000493829 LAMTOR2Q9Y2Q5 125 aa13.47□□□□□ -0.25
USP39-218ENST00000493829 MRPL23Q16540 153 aaKnown RBP13.47□□□□□ -0.25
USP39-218ENST00000493829 C1orf196B1AJZ1 125 aa13.46□□□□□ -0.26
USP39-218ENST00000493829 H3BNG1 76 aa13.46□□□□□ -0.26
USP39-218ENST00000493829 C18orf32Q8TCD1 76 aa13.46□□□□□ -0.26
USP39-218ENST00000493829 C20orf78Q9BR46 151 aa13.46□□□□□ -0.26
USP39-218ENST00000493829 SMIM2Q9BVW6 85 aa13.46□□□□□ -0.26
USP39-218ENST00000493829 ATP6V0E2Q8NHE4 81 aa13.45□□□□□ -0.26
USP39-218ENST00000493829 DNAH7Q8WXX0 4024 aa13.45□□□□□ -0.26
USP39-218ENST00000493829 PMCHP20382 165 aa13.44□□□□□ -0.26
USP39-218ENST00000493829 IFI27P40305 119 aaPredicted RBP13.44□□□□□ -0.26
USP39-218ENST00000493829 KLK5Q9Y337 293 aaPredicted RBP13.44□□□□□ -0.26
USP39-218ENST00000493829 HIST1H2BKO60814 126 aa13.44□□□□□ -0.26
USP39-218ENST00000493829 HIST1H2BJP06899 126 aa13.44□□□□□ -0.26
USP39-218ENST00000493829 HIST1H2BOP23527 126 aa13.44□□□□□ -0.26
USP39-218ENST00000493829 HIST1H2BBP33778 126 aa13.44□□□□□ -0.26
USP39-218ENST00000493829 POLR2KP53803 58 aaKnown RBP13.44□□□□□ -0.26
USP39-218ENST00000493829 HIST1H2BDP58876 126 aa13.44□□□□□ -0.26
USP39-218ENST00000493829 HIST1H2BCP62807 126 aa13.44□□□□□ -0.26
USP39-218ENST00000493829 HIST2H2BEQ16778 126 aa13.44□□□□□ -0.26
USP39-218ENST00000493829 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.44□□□□□ -0.26
USP39-218ENST00000493829 HIST1H2BHQ93079 126 aa13.44□□□□□ -0.26
USP39-218ENST00000493829 HIST1H2BNQ99877 126 aa13.44□□□□□ -0.26
USP39-218ENST00000493829 HIST1H2BMQ99879 126 aa13.44□□□□□ -0.26
USP39-218ENST00000493829 TCAPO15273 167 aa13.43□□□□□ -0.26
USP39-218ENST00000493829 C15orf53Q8NAA6 179 aa13.43□□□□□ -0.26
USP39-218ENST00000493829 PRSS3P2Q8NHM4 247 aa13.43□□□□□ -0.26
USP39-218ENST00000493829 I3L3M4 83 aa13.42□□□□□ -0.26
USP39-218ENST00000493829 DAZ4Q86SG3 579 aaKnown RBP13.42□□□□□ -0.26
USP39-218ENST00000493829 DAZ3Q9NR90 486 aaKnown RBP13.42□□□□□ -0.26
USP39-218ENST00000493829 TRBV27A0A0K0K1C4 114 aa13.41□□□□□ -0.26
USP39-218ENST00000493829 VCYO14598 125 aa13.41□□□□□ -0.26
USP39-218ENST00000493829 CSMD3Q7Z407 3707 aa13.41□□□□□ -0.26
USP39-218ENST00000493829 TSHBP01222 138 aa13.4□□□□□ -0.26
USP39-218ENST00000493829 FCER1GP30273 86 aa13.4□□□□□ -0.26
USP39-218ENST00000493829 COTL1Q14019 142 aa13.4□□□□□ -0.26
USP39-218ENST00000493829 RNASEKQ6P5S7 137 aaKnown RBP13.4□□□□□ -0.26
USP39-218ENST00000493829 BAGE3Q86Y29 109 aa13.4□□□□□ -0.26
USP39-218ENST00000493829 Q8N8P6 123 aa13.4□□□□□ -0.26
USP39-218ENST00000493829 IGLV2-18A0A075B6J9 118 aa13.4□□□□□ -0.26
USP39-218ENST00000493829 FA2HQ7L5A8 372 aa13.4□□□□□ -0.26
USP39-218ENST00000493829 KIR2DL4Q99706 377 aa13.4□□□□□ -0.26
USP39-218ENST00000493829 APLNQ9ULZ1 77 aa13.4□□□□□ -0.26
USP39-218ENST00000493829 RAB5BP61020 215 aa13.39□□□□□ -0.27
USP39-218ENST00000493829 GTSF1LQ9H1H1 148 aa13.39□□□□□ -0.27
USP39-218ENST00000493829 NXT2Q9NPJ8 142 aaKnown RBP13.39□□□□□ -0.27
USP39-218ENST00000493829 PRSS47A8MTI9 375 aa13.38□□□□□ -0.27
USP39-218ENST00000493829 RPL32P62910 135 aaKnown RBP13.38□□□□□ -0.27
USP39-218ENST00000493829 NTM-AS1Q6ZSK4 140 aa13.38□□□□□ -0.27
USP39-218ENST00000493829 SH2D6Q7Z4S9 175 aa13.38□□□□□ -0.27
USP39-218ENST00000493829 URB1-AS1Q96HZ7 61 aa13.38□□□□□ -0.27
USP39-218ENST00000493829 LYPD5Q6UWN5 251 aa13.37□□□□□ -0.27
USP39-218ENST00000493829 TMA7Q9Y2S6 64 aaKnown RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms