RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 SCO1O75880 301 aa7.08□□□□□ -1.28
UPF2-204ENST00000460569 HLA-DQA1P01909 254 aa7.08□□□□□ -1.28
UPF2-204ENST00000460569 TCTAP57738 103 aa7.08□□□□□ -1.28
UPF2-204ENST00000460569 RPL36AP83881 106 aaKnown RBP7.08□□□□□ -1.28
UPF2-204ENST00000460569 COX19Q49B96 90 aa7.08□□□□□ -1.28
UPF2-204ENST00000460569 TMEM136Q6ZRR5 245 aa7.08□□□□□ -1.28
UPF2-204ENST00000460569 NEXN-AS1Q8NBZ9 246 aa7.08□□□□□ -1.28
UPF2-204ENST00000460569 ZNRF2Q8NHG8 242 aa7.08□□□□□ -1.28
UPF2-204ENST00000460569 RPL36ALQ969Q0 106 aaKnown RBP7.08□□□□□ -1.28
UPF2-204ENST00000460569 YPEL4Q96NS1 127 aa7.08□□□□□ -1.28
UPF2-204ENST00000460569 OR10J3Q5JRS4 329 aa7.07□□□□□ -1.28
UPF2-204ENST00000460569 FRZBQ92765 325 aa7.07□□□□□ -1.28
UPF2-204ENST00000460569 RPL39LQ96EH5 51 aaKnown RBP7.07□□□□□ -1.28
UPF2-204ENST00000460569 GNB1LQ9BYB4 327 aa7.07□□□□□ -1.28
UPF2-204ENST00000460569 NIT2Q9NQR4 276 aa7.07□□□□□ -1.28
UPF2-204ENST00000460569 TNFRSF18Q9Y5U5 241 aa7.07□□□□□ -1.28
UPF2-204ENST00000460569 TRBV7-3A0A075B6L6 115 aa7.06□□□□□ -1.28
UPF2-204ENST00000460569 D6R8Y8 96 aa7.06□□□□□ -1.28
UPF2-204ENST00000460569 GAS8-AS1O95177 125 aa7.06□□□□□ -1.28
UPF2-204ENST00000460569 MT-ND6P03923 174 aa7.06□□□□□ -1.28
UPF2-204ENST00000460569 LINC00694P0DN24 101 aa7.06□□□□□ -1.28
UPF2-204ENST00000460569 CKS2P33552 79 aa7.06□□□□□ -1.28
UPF2-204ENST00000460569 NEGR1Q7Z3B1 354 aa7.06□□□□□ -1.28
UPF2-204ENST00000460569 SH2D6Q7Z4S9 175 aa7.06□□□□□ -1.28
UPF2-204ENST00000460569 ATP6V0E2Q8NHE4 81 aa7.06□□□□□ -1.28
UPF2-204ENST00000460569 DNAJC30Q96LL9 226 aa7.06□□□□□ -1.28
UPF2-204ENST00000460569 DNAH7Q8WXX0 4024 aa7.06□□□□□ -1.28
UPF2-204ENST00000460569 CSMD3Q7Z407 3707 aa7.05□□□□□ -1.28
UPF2-204ENST00000460569 APCSP02743 223 aa7.05□□□□□ -1.28
UPF2-204ENST00000460569 RPS10P46783 165 aaKnown RBP7.05□□□□□ -1.28
UPF2-204ENST00000460569 UBE2D3P61077 147 aa7.05□□□□□ -1.28
UPF2-204ENST00000460569 UBE2D2P62837 147 aa7.05□□□□□ -1.28
UPF2-204ENST00000460569 ORMDL3Q8N138 153 aa7.05□□□□□ -1.28
UPF2-204ENST00000460569 MRPL18Q9H0U6 180 aaKnown RBP7.05□□□□□ -1.28
UPF2-204ENST00000460569 TENM2Q9NT68 2774 aa7.05□□□□□ -1.28
UPF2-204ENST00000460569 IGHV3-38A0A0C4DH36 116 aa7.04□□□□□ -1.28
UPF2-204ENST00000460569 PPP1R17O96001 155 aa7.04□□□□□ -1.28
UPF2-204ENST00000460569 PPBPP02775 128 aa7.04□□□□□ -1.28
UPF2-204ENST00000460569 FABP9Q0Z7S8 132 aa7.04□□□□□ -1.28
UPF2-204ENST00000460569 KIAA1644Q3SXP7 199 aa7.04□□□□□ -1.28
UPF2-204ENST00000460569 UBE2DNLQ8IWF7 75 aa7.04□□□□□ -1.28
UPF2-204ENST00000460569 NRACQ8N912 160 aa7.04□□□□□ -1.28
UPF2-204ENST00000460569 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.04□□□□□ -1.28
UPF2-204ENST00000460569 PRELID3AQ96N28 172 aa7.04□□□□□ -1.28
UPF2-204ENST00000460569 ST20Q9HBF5 79 aa7.04□□□□□ -1.28
UPF2-204ENST00000460569 TRAPPC1Q9Y5R8 145 aa7.04□□□□□ -1.28
UPF2-204ENST00000460569 TRBV6-5A0A0K0K1A5 114 aa7.03□□□□□ -1.28
UPF2-204ENST00000460569 SDHAF1A6NFY7 115 aa7.03□□□□□ -1.28
UPF2-204ENST00000460569 TNFRSF6BO95407 300 aa7.03□□□□□ -1.28
UPF2-204ENST00000460569 NPYP01303 97 aa7.03□□□□□ -1.28
UPF2-204ENST00000460569 CCL18P55774 89 aa7.03□□□□□ -1.28
UPF2-204ENST00000460569 ESRGQ1W209 222 aa7.03□□□□□ -1.28
UPF2-204ENST00000460569 DAZ4Q86SG3 579 aaKnown RBP7.03□□□□□ -1.28
UPF2-204ENST00000460569 GTSF1LQ9H1H1 148 aa7.03□□□□□ -1.28
UPF2-204ENST00000460569 DAZ3Q9NR90 486 aaKnown RBP7.03□□□□□ -1.28
UPF2-204ENST00000460569 COLCA2A8K830 154 aa7.02□□□□□ -1.29
UPF2-204ENST00000460569 SUMO2P61956 95 aaKnown RBP7.02□□□□□ -1.29
UPF2-204ENST00000460569 LYPD5Q6UWN5 251 aa7.02□□□□□ -1.29
UPF2-204ENST00000460569 TMEM70Q9BUB7 260 aa7.02□□□□□ -1.29
UPF2-204ENST00000460569 LINC00588Q9Y4M8 146 aa7.02□□□□□ -1.29
UPF2-204ENST00000460569 STARD9Q9P2P6 4700 aa7.02□□□□□ -1.29
UPF2-204ENST00000460569 PHOX2AO14813 284 aa7.01□□□□□ -1.29
UPF2-204ENST00000460569 RAB5AP20339 215 aa7.01□□□□□ -1.29
UPF2-204ENST00000460569 DEFB104AQ8WTQ1 72 aa7.01□□□□□ -1.29
UPF2-204ENST00000460569 C20orf78Q9BR46 151 aa7.01□□□□□ -1.29
UPF2-204ENST00000460569 MAP1LC3AQ9H492 121 aa7.01□□□□□ -1.29
UPF2-204ENST00000460569 LAMTOR2Q9Y2Q5 125 aa7.01□□□□□ -1.29
UPF2-204ENST00000460569 MRPS16Q9Y3D3 137 aaKnown RBP7.01□□□□□ -1.29
UPF2-204ENST00000460569 I3L3M4 83 aa7□□□□□ -1.29
UPF2-204ENST00000460569 LY6G6CO95867 125 aa7□□□□□ -1.29
UPF2-204ENST00000460569 PMCHP20382 165 aa7□□□□□ -1.29
UPF2-204ENST00000460569 POLR2KP53803 58 aaKnown RBP7□□□□□ -1.29
UPF2-204ENST00000460569 TIRAPP58753 221 aa7□□□□□ -1.29
UPF2-204ENST00000460569 COTL1Q14019 142 aa7□□□□□ -1.29
UPF2-204ENST00000460569 TMEM97Q5BJF2 176 aa7□□□□□ -1.29
UPF2-204ENST00000460569 LELP1Q5T871 98 aa7□□□□□ -1.29
UPF2-204ENST00000460569 LGALS9CQ6DKI2 356 aa7□□□□□ -1.29
UPF2-204ENST00000460569 LINC00476Q8WZB0 136 aa7□□□□□ -1.29
UPF2-204ENST00000460569 SMIM2Q9BVW6 85 aa7□□□□□ -1.29
UPF2-204ENST00000460569 DYNC2H1Q8NCM8 4307 aaKnown RBP7□□□□□ -1.29
UPF2-204ENST00000460569 TRBV6-8A0A0A6YYG3 113 aa6.99□□□□□ -1.29
UPF2-204ENST00000460569 TRAV8-6A0A0B4J262 113 aa6.99□□□□□ -1.29
UPF2-204ENST00000460569 TRBV27A0A0K0K1C4 114 aa6.99□□□□□ -1.29
UPF2-204ENST00000460569 LOC389332A0A1B0GUA5 103 aa6.99□□□□□ -1.29
UPF2-204ENST00000460569 VCYO14598 125 aa6.99□□□□□ -1.29
UPF2-204ENST00000460569 RPL32P62910 135 aaKnown RBP6.99□□□□□ -1.29
UPF2-204ENST00000460569 NTM-AS1Q6ZSK4 140 aa6.99□□□□□ -1.29
UPF2-204ENST00000460569 ALKBH7Q9BT30 221 aaPredicted RBP6.99□□□□□ -1.29
UPF2-204ENST00000460569 TRBV25-1A0A075B6N4 114 aa6.98□□□□□ -1.29
UPF2-204ENST00000460569 IGHV1-24A0A0C4DH33 117 aa6.98□□□□□ -1.29
UPF2-204ENST00000460569 TSHBP01222 138 aa6.98□□□□□ -1.29
UPF2-204ENST00000460569 TRGC2P03986 189 aa6.98□□□□□ -1.29
UPF2-204ENST00000460569 FCER1GP30273 86 aa6.98□□□□□ -1.29
UPF2-204ENST00000460569 AMTP48728 403 aa6.98□□□□□ -1.29
UPF2-204ENST00000460569 WFDC10BQ8IUB3 73 aa6.98□□□□□ -1.29
UPF2-204ENST00000460569 KIR2DL4Q99706 377 aa6.98□□□□□ -1.29
UPF2-204ENST00000460569 UPK3BQ9BT76 320 aa6.98□□□□□ -1.29
UPF2-204ENST00000460569 IQCJQ1A5X6 159 aa6.97□□□□□ -1.29
UPF2-204ENST00000460569 CHCHD5Q9BSY4 110 aa6.97□□□□□ -1.29
UPF2-204ENST00000460569 TMEM243Q9BU79 118 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms