RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 FAM231AP0DMU4 169 aa9.9□□□□□ -0.83
PTPRF-202ENST00000372405 FAM231CP0DMU5 169 aa9.9□□□□□ -0.83
PTPRF-202ENST00000372405 OXLD1Q5BKU9 147 aa9.9□□□□□ -0.83
PTPRF-202ENST00000372405 DEFB104AQ8WTQ1 72 aa9.9□□□□□ -0.83
PTPRF-202ENST00000372405 C16orf74Q96GX8 76 aa9.9□□□□□ -0.83
PTPRF-202ENST00000372405 C18orf15Q96N68 181 aa9.9□□□□□ -0.83
PTPRF-202ENST00000372405 MAJINQ3KP22 176 aa9.89□□□□□ -0.83
PTPRF-202ENST00000372405 PET117Q6UWS5 81 aa9.89□□□□□ -0.83
PTPRF-202ENST00000372405 C12orf54Q6X4T0 127 aa9.89□□□□□ -0.83
PTPRF-202ENST00000372405 IFI27L1Q96BM0 104 aa9.89□□□□□ -0.83
PTPRF-202ENST00000372405 NDUFAF3Q9BU61 184 aa9.89□□□□□ -0.83
PTPRF-202ENST00000372405 NOP10Q9NPE3 64 aaKnown RBP9.89□□□□□ -0.83
PTPRF-202ENST00000372405 KIR2DL5BA0A0G2JN68 375 aa9.88□□□□□ -0.83
PTPRF-202ENST00000372405 KIR2DL5BA0A0G2JPC4 375 aa9.88□□□□□ -0.83
PTPRF-202ENST00000372405 TRBV27A0A0K0K1C4 114 aa9.88□□□□□ -0.83
PTPRF-202ENST00000372405 DAZ2Q13117 558 aaKnown RBP9.88□□□□□ -0.83
PTPRF-202ENST00000372405 RRN3P1Q2M238 152 aa9.88□□□□□ -0.83
PTPRF-202ENST00000372405 LINC01545Q5VT33 79 aa9.88□□□□□ -0.83
PTPRF-202ENST00000372405 KIR2DL5AQ8N109 375 aa9.88□□□□□ -0.83
PTPRF-202ENST00000372405 PMCHL2Q9BQD1 86 aa9.88□□□□□ -0.83
PTPRF-202ENST00000372405 PAM16Q9Y3D7 125 aa9.88□□□□□ -0.83
PTPRF-202ENST00000372405 K7EMI3 77 aa9.87□□□□□ -0.83
PTPRF-202ENST00000372405 NUDT3O95989 172 aa9.87□□□□□ -0.83
PTPRF-202ENST00000372405 LGALS9BQ3B8N2 356 aa9.87□□□□□ -0.83
PTPRF-202ENST00000372405 ORMDL2Q53FV1 153 aa9.87□□□□□ -0.83
PTPRF-202ENST00000372405 VAMP8Q9BV40 100 aa9.87□□□□□ -0.83
PTPRF-202ENST00000372405 RHODO00212 210 aa9.86□□□□□ -0.83
PTPRF-202ENST00000372405 VCYO14598 125 aa9.86□□□□□ -0.83
PTPRF-202ENST00000372405 IGHV3-53P01767 116 aa9.86□□□□□ -0.83
PTPRF-202ENST00000372405 KRTAP10-11P60412 298 aa9.86□□□□□ -0.83
PTPRF-202ENST00000372405 ZNF479Q96JC4 524 aa9.86□□□□□ -0.83
PTPRF-202ENST00000372405 X6R8D5 127 aa9.86□□□□□ -0.83
PTPRF-202ENST00000372405 ANK2Q01484 3957 aa9.86□□□□□ -0.83
PTPRF-202ENST00000372405 ZFP2Q6ZN57 461 aa9.86□□□□□ -0.83
PTPRF-202ENST00000372405 TOMM6Q96B49 74 aa9.86□□□□□ -0.83
PTPRF-202ENST00000372405 OVOL2Q9BRP0 275 aa9.86□□□□□ -0.83
PTPRF-202ENST00000372405 H7C1H1 209 aa9.85□□□□□ -0.83
PTPRF-202ENST00000372405 KIR2DL5BQ8NHK3 375 aa9.85□□□□□ -0.83
PTPRF-202ENST00000372405 DNAH3Q8TD57 4116 aa9.85□□□□□ -0.83
PTPRF-202ENST00000372405 C20orf202A1L168 122 aa9.84□□□□□ -0.83
PTPRF-202ENST00000372405 C2orf66Q6UXQ4 117 aa9.84□□□□□ -0.83
PTPRF-202ENST00000372405 OR4C5Q8NGB2 326 aa9.84□□□□□ -0.83
PTPRF-202ENST00000372405 TRAV9-2A0A087WT02 112 aa9.84□□□□□ -0.83
PTPRF-202ENST00000372405 TSHBP01222 138 aa9.84□□□□□ -0.83
PTPRF-202ENST00000372405 IGHV4-30-4P0DP06 118 aa9.84□□□□□ -0.83
PTPRF-202ENST00000372405 NEXN-AS1Q8NBZ9 246 aa9.84□□□□□ -0.83
PTPRF-202ENST00000372405 KIR2DL4Q99706 377 aa9.84□□□□□ -0.83
PTPRF-202ENST00000372405 ZMAT5Q9UDW3 170 aaKnown RBP9.84□□□□□ -0.83
PTPRF-202ENST00000372405 TRAV4A0A0B4J268 109 aa9.83□□□□□ -0.84
PTPRF-202ENST00000372405 GAGE12BA1L429 117 aa9.83□□□□□ -0.84
PTPRF-202ENST00000372405 GAGE7O76087 117 aa9.83□□□□□ -0.84
PTPRF-202ENST00000372405 GAGE12FP0CL80 117 aa9.83□□□□□ -0.84
PTPRF-202ENST00000372405 GAGE12GP0CL81 117 aa9.83□□□□□ -0.84
PTPRF-202ENST00000372405 GAGE12IP0CL82 117 aa9.83□□□□□ -0.84
PTPRF-202ENST00000372405 EGFEM1PQ0D2K5 195 aa9.83□□□□□ -0.84
PTPRF-202ENST00000372405 DEFB135Q30KP9 77 aa9.83□□□□□ -0.84
PTPRF-202ENST00000372405 SPATA45Q537H7 98 aa9.83□□□□□ -0.84
PTPRF-202ENST00000372405 LGALS9CQ6DKI2 356 aa9.83□□□□□ -0.84
PTPRF-202ENST00000372405 DKK2Q9UBU2 259 aa9.83□□□□□ -0.84
PTPRF-202ENST00000372405 hDV102S1A0JD36 115 aa9.82□□□□□ -0.84
PTPRF-202ENST00000372405 I3L3M4 83 aa9.82□□□□□ -0.84
PTPRF-202ENST00000372405 ATP5LO75964 103 aa9.82□□□□□ -0.84
PTPRF-202ENST00000372405 EMP1P54849 157 aa9.82□□□□□ -0.84
PTPRF-202ENST00000372405 APOC4P55056 127 aa9.82□□□□□ -0.84
PTPRF-202ENST00000372405 RIPPLY3P57055 190 aa9.82□□□□□ -0.84
PTPRF-202ENST00000372405 RPL39P62891 51 aaKnown RBP9.82□□□□□ -0.84
PTPRF-202ENST00000372405 ODF1Q14990 250 aa9.82□□□□□ -0.84
PTPRF-202ENST00000372405 LBHQ53QV2 105 aaPredicted RBP9.82□□□□□ -0.84
PTPRF-202ENST00000372405 TNFRSF18Q9Y5U5 241 aa9.81□□□□□ -0.84
PTPRF-202ENST00000372405 PRSS1P07477 247 aa9.81□□□□□ -0.84
PTPRF-202ENST00000372405 SCGB3A1Q96QR1 104 aa9.81□□□□□ -0.84
PTPRF-202ENST00000372405 C2orf88Q9BSF0 95 aa9.81□□□□□ -0.84
PTPRF-202ENST00000372405 TP53TG1Q9Y2A0 90 aa9.81□□□□□ -0.84
PTPRF-202ENST00000372405 TRGV2A0A075B6R0 118 aa9.8□□□□□ -0.84
PTPRF-202ENST00000372405 SMIM9A6NGZ8 99 aa9.8□□□□□ -0.84
PTPRF-202ENST00000372405 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.8□□□□□ -0.84
PTPRF-202ENST00000372405 LINC00612Q8N6U2 182 aa9.8□□□□□ -0.84
PTPRF-202ENST00000372405 LINC00469Q8N7U9 141 aa9.8□□□□□ -0.84
PTPRF-202ENST00000372405 CYSLTR1Q9Y271 337 aa9.8□□□□□ -0.84
PTPRF-202ENST00000372405 IGIPA6NJ69 53 aa9.79□□□□□ -0.84
PTPRF-202ENST00000372405 RHOHQ15669 191 aa9.79□□□□□ -0.84
PTPRF-202ENST00000372405 SLC25A29Q8N8R3 303 aa9.79□□□□□ -0.84
PTPRF-202ENST00000372405 G3V4G9 280 aa9.79□□□□□ -0.84
PTPRF-202ENST00000372405 IGLC3P0DOY3 106 aa9.79□□□□□ -0.84
PTPRF-202ENST00000372405 ERASQ7Z444 233 aa9.79□□□□□ -0.84
PTPRF-202ENST00000372405 DNAJC30Q96LL9 226 aa9.79□□□□□ -0.84
PTPRF-202ENST00000372405 ZMAT4Q9H898 229 aa9.79□□□□□ -0.84
PTPRF-202ENST00000372405 K7EQD1 137 aa9.78□□□□□ -0.84
PTPRF-202ENST00000372405 OR11H2Q8NH07 326 aa9.78□□□□□ -0.84
PTPRF-202ENST00000372405 BAALCQ8WXS3 180 aa9.78□□□□□ -0.84
PTPRF-202ENST00000372405 IGHV3-38A0A0C4DH36 116 aa9.77□□□□□ -0.84
PTPRF-202ENST00000372405 C20orf203Q8NBC4 194 aa9.77□□□□□ -0.84
PTPRF-202ENST00000372405 NOTCH1P46531 2555 aa9.77□□□□□ -0.85
PTPRF-202ENST00000372405 A0A1B0GV90 55 aa9.77□□□□□ -0.85
PTPRF-202ENST00000372405 DEFB4AO15263 64 aa9.77□□□□□ -0.85
PTPRF-202ENST00000372405 Q6ZN92 141 aa9.77□□□□□ -0.85
PTPRF-202ENST00000372405 ZNRF2Q8NHG8 242 aa9.77□□□□□ -0.85
PTPRF-202ENST00000372405 PHLDA1Q8WV24 401 aaPredicted RBP9.77□□□□□ -0.85
PTPRF-202ENST00000372405 MIEN1Q9BRT3 115 aa9.77□□□□□ -0.85
PTPRF-202ENST00000372405 MRPL35Q9NZE8 188 aaKnown RBP9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms