RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 ATG2AQ2TAZ0 1938 aa8.84□□□□□ -0.99
PTPN4-201ENST00000263708 ZNF726P1Q15940 193 aa8.84□□□□□ -0.99
PTPN4-201ENST00000263708 Q6ZR03 302 aa8.84□□□□□ -0.99
PTPN4-201ENST00000263708 C7orf33Q8WU49 177 aa8.84□□□□□ -0.99
PTPN4-201ENST00000263708 CRYGDP07320 174 aa8.84□□□□□ -0.99
PTPN4-201ENST00000263708 SPINK6Q6UWN8 80 aa8.84□□□□□ -0.99
PTPN4-201ENST00000263708 Q8N9W7 124 aa8.84□□□□□ -1
PTPN4-201ENST00000263708 AJUBAQ96IF1 538 aa8.83□□□□□ -1
PTPN4-201ENST00000263708 SIRPDQ9H106 197 aa8.83□□□□□ -1
PTPN4-201ENST00000263708 SCXQ7RTU7 201 aa8.83□□□□□ -1
PTPN4-201ENST00000263708 TRAV26-1A0A087WT03 109 aa8.83□□□□□ -1
PTPN4-201ENST00000263708 MUC6Q6W4X9 2439 aa8.82□□□□□ -1
PTPN4-201ENST00000263708 NRGNQ92686 78 aa8.82□□□□□ -1
PTPN4-201ENST00000263708 CSRP3P50461 194 aa8.82□□□□□ -1
PTPN4-201ENST00000263708 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.82□□□□□ -1
PTPN4-201ENST00000263708 ZNF747Q9BV97 191 aa8.82□□□□□ -1
PTPN4-201ENST00000263708 C4orf3Q8WVX3 66 aa8.81□□□□□ -1
PTPN4-201ENST00000263708 FHL1Q13642 323 aa8.81□□□□□ -1
PTPN4-201ENST00000263708 TMEM263Q8WUH6 116 aaKnown RBP8.81□□□□□ -1
PTPN4-201ENST00000263708 EXPH5Q8NEV8 1989 aa8.81□□□□□ -1
PTPN4-201ENST00000263708 NOTCH4Q99466 2003 aa8.81□□□□□ -1
PTPN4-201ENST00000263708 C15orf65H3BRN8 121 aa8.81□□□□□ -1
PTPN4-201ENST00000263708 BLCAPP62952 87 aa8.81□□□□□ -1
PTPN4-201ENST00000263708 C2orf70A6NJV1 201 aa8.81□□□□□ -1
PTPN4-201ENST00000263708 TEN1Q86WV5 123 aa8.81□□□□□ -1
PTPN4-201ENST00000263708 AGRNO00468 2067 aa8.81□□□□□ -1
PTPN4-201ENST00000263708 FAM19A5Q7Z5A7 132 aaPredicted RBP8.81□□□□□ -1
PTPN4-201ENST00000263708 GRNP28799 593 aaKnown RBP8.8□□□□□ -1
PTPN4-201ENST00000263708 LENEPQ9Y5L5 61 aa8.8□□□□□ -1
PTPN4-201ENST00000263708 SONP18583 2426 aaKnown RBP8.8□□□□□ -1
PTPN4-201ENST00000263708 OTOGLQ3ZCN5 2332 aa8.8□□□□□ -1
PTPN4-201ENST00000263708 A6NED7 52 aa8.8□□□□□ -1
PTPN4-201ENST00000263708 GPR179Q6PRD1 2367 aa8.8□□□□□ -1
PTPN4-201ENST00000263708 PDE6GP18545 87 aa8.8□□□□□ -1
PTPN4-201ENST00000263708 LINC00269Q8N2A0 174 aa8.8□□□□□ -1
PTPN4-201ENST00000263708 RETNQ9HD89 108 aa8.8□□□□□ -1
PTPN4-201ENST00000263708 NUP210Q8TEM1 1887 aaPredicted RBP8.8□□□□□ -1
PTPN4-201ENST00000263708 PRR4Q16378 134 aa8.79□□□□□ -1
PTPN4-201ENST00000263708 C9orf85Q96MD7 179 aa8.79□□□□□ -1
PTPN4-201ENST00000263708 TANC1Q9C0D5 1861 aa8.79□□□□□ -1
PTPN4-201ENST00000263708 IGHV4-61A0A0C4DH41 118 aa8.79□□□□□ -1
PTPN4-201ENST00000263708 CSPG4Q6UVK1 2322 aa8.79□□□□□ -1
PTPN4-201ENST00000263708 CENPVL3A0A0U1RRI6 287 aa8.79□□□□□ -1
PTPN4-201ENST00000263708 SDIM1Q6ZPB5 146 aa8.78□□□□□ -1
PTPN4-201ENST00000263708 IGFL3Q6UXB1 125 aa8.78□□□□□ -1
PTPN4-201ENST00000263708 FAM240AA0A1B0GVK7 77 aa8.78□□□□□ -1
PTPN4-201ENST00000263708 HIST2H2BDQ6DRA6 164 aa8.78□□□□□ -1
PTPN4-201ENST00000263708 TOMM6Q96B49 74 aa8.78□□□□□ -1
PTPN4-201ENST00000263708 Q6ZUT4 128 aa8.78□□□□□ -1
PTPN4-201ENST00000263708 PTPRQQ9UMZ3 2332 aa8.78□□□□□ -1
PTPN4-201ENST00000263708 IGHV2-70P01814 119 aa8.77□□□□□ -1
PTPN4-201ENST00000263708 COL4A6Q14031 1691 aa8.77□□□□□ -1
PTPN4-201ENST00000263708 WFDC2Q14508 124 aa8.77□□□□□ -1.01
PTPN4-201ENST00000263708 RITA1Q96K30 269 aa8.77□□□□□ -1.01
PTPN4-201ENST00000263708 LY6G6EA0A0G2JKS1 128 aa8.77□□□□□ -1.01
PTPN4-201ENST00000263708 NFE4Q86UQ8 179 aa8.77□□□□□ -1.01
PTPN4-201ENST00000263708 TTC28Q96AY4 2481 aa8.77□□□□□ -1.01
PTPN4-201ENST00000263708 HILS1P60008 231 aa8.77□□□□□ -1.01
PTPN4-201ENST00000263708 FOXL2NBQ6ZUU3 175 aa8.77□□□□□ -1.01
PTPN4-201ENST00000263708 C16orf54Q6UWD8 224 aa8.76□□□□□ -1.01
PTPN4-201ENST00000263708 NUP210LQ5VU65 1888 aa8.76□□□□□ -1.01
PTPN4-201ENST00000263708 ZNF503-AS2A6NEH8 195 aa8.76□□□□□ -1.01
PTPN4-201ENST00000263708 NDUFC2-KCTD14E9PQ53 114 aa8.76□□□□□ -1.01
PTPN4-201ENST00000263708 MED14OSP0DP75 135 aa8.76□□□□□ -1.01
PTPN4-201ENST00000263708 C5orf56Q8N8D9 126 aa8.76□□□□□ -1.01
PTPN4-201ENST00000263708 M0R2N4 97 aa8.76□□□□□ -1.01
PTPN4-201ENST00000263708 IGHV7-81A0A0B4J1V7 117 aa8.76□□□□□ -1.01
PTPN4-201ENST00000263708 REG3AQ06141 175 aa8.76□□□□□ -1.01
PTPN4-201ENST00000263708 IGHV1-58A0A0C4DH39 117 aa8.76□□□□□ -1.01
PTPN4-201ENST00000263708 PIK3CD-AS1Q5SR53 167 aa8.76□□□□□ -1.01
PTPN4-201ENST00000263708 X6R8D5 127 aa8.76□□□□□ -1.01
PTPN4-201ENST00000263708 MSRB1Q9NZV6 116 aa8.75□□□□□ -1.01
PTPN4-201ENST00000263708 C3orf84H3BNL1 204 aa8.75□□□□□ -1.01
PTPN4-201ENST00000263708 ZFHX2Q9C0A1 2572 aaPredicted RBP8.75□□□□□ -1.01
PTPN4-201ENST00000263708 ENHOQ6UWT2 76 aa8.75□□□□□ -1.01
PTPN4-201ENST00000263708 FAM236DA0A1B0GTK5 79 aa8.75□□□□□ -1.01
PTPN4-201ENST00000263708 PRYO14603 147 aa8.75□□□□□ -1.01
PTPN4-201ENST00000263708 FAM236CP0DP71 79 aa8.75□□□□□ -1.01
PTPN4-201ENST00000263708 UBE2D2P62837 147 aa8.75□□□□□ -1.01
PTPN4-201ENST00000263708 C1orf158Q8N1D5 194 aa8.75□□□□□ -1.01
PTPN4-201ENST00000263708 FXYD2P54710 66 aa8.75□□□□□ -1.01
PTPN4-201ENST00000263708 PRO0255Q9UI72 69 aa8.75□□□□□ -1.01
PTPN4-201ENST00000263708 UFSP1Q6NVU6 142 aa8.74□□□□□ -1.01
PTPN4-201ENST00000263708 SERP2Q8N6R1 65 aa8.74□□□□□ -1.01
PTPN4-201ENST00000263708 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.74□□□□□ -1.01
PTPN4-201ENST00000263708 PPDPFQ9H3Y8 114 aa8.74□□□□□ -1.01
PTPN4-201ENST00000263708 LTBP1Q14766 1721 aa8.74□□□□□ -1.01
PTPN4-201ENST00000263708 MYCNOSP40205 109 aa8.74□□□□□ -1.01
PTPN4-201ENST00000263708 C20orf197Q8N268 126 aa8.74□□□□□ -1.01
PTPN4-201ENST00000263708 LINC00173Q6ZV60 143 aa8.74□□□□□ -1.01
PTPN4-201ENST00000263708 MYO18BQ8IUG5 2567 aa8.74□□□□□ -1.01
PTPN4-201ENST00000263708 IGLV9-49A0A0B4J1Y8 123 aa8.74□□□□□ -1.01
PTPN4-201ENST00000263708 Q6ZVQ6 151 aa8.74□□□□□ -1.01
PTPN4-201ENST00000263708 MDFICQ9P1T7 246 aa8.74□□□□□ -1.01
PTPN4-201ENST00000263708 C17orf82Q86X59 251 aaPredicted RBP8.74□□□□□ -1.01
PTPN4-201ENST00000263708 DEFB131BA0A096LNP1 70 aa8.73□□□□□ -1.01
PTPN4-201ENST00000263708 IGLV1-44P01699 117 aa8.73□□□□□ -1.01
PTPN4-201ENST00000263708 IGLV2-18A0A075B6J9 118 aa8.73□□□□□ -1.01
PTPN4-201ENST00000263708 KAAG1Q9UBP8 84 aa8.73□□□□□ -1.01
PTPN4-201ENST00000263708 C11orf86A6NJI1 115 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms