RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 LINC01548A6NM66 108 aa8.45□□□□□ -1.06
CLN3-244ENST00000636147 RASL10AQ92737 203 aa8.45□□□□□ -1.06
CLN3-244ENST00000636147 NPFFO15130 113 aa8.45□□□□□ -1.06
CLN3-244ENST00000636147 IGFL3Q6UXB1 125 aa8.45□□□□□ -1.06
CLN3-244ENST00000636147 DUX5Q96PT3 197 aa8.45□□□□□ -1.06
CLN3-244ENST00000636147 RBAKDNA6NC62 111 aa8.44□□□□□ -1.06
CLN3-244ENST00000636147 HOXB4P17483 251 aaPredicted RBP8.44□□□□□ -1.06
CLN3-244ENST00000636147 MRGPRG-AS1Q2M3A8 158 aa8.44□□□□□ -1.06
CLN3-244ENST00000636147 NPBQ8NG41 125 aa8.44□□□□□ -1.06
CLN3-244ENST00000636147 TRBV7-3A0A075B6L6 115 aa8.44□□□□□ -1.06
CLN3-244ENST00000636147 OOSP1A8MZH6 123 aa8.44□□□□□ -1.06
CLN3-244ENST00000636147 MRPS12O15235 138 aaKnown RBP8.44□□□□□ -1.06
CLN3-244ENST00000636147 SPINK13Q1W4C9 94 aa8.44□□□□□ -1.06
CLN3-244ENST00000636147 NRACQ8N912 160 aa8.44□□□□□ -1.06
CLN3-244ENST00000636147 PHLDA1Q8WV24 401 aaPredicted RBP8.44□□□□□ -1.06
CLN3-244ENST00000636147 MAP1AP78559 2803 aaPredicted RBP8.44□□□□□ -1.06
CLN3-244ENST00000636147 CFAP126Q5VTH2 177 aa8.44□□□□□ -1.06
CLN3-244ENST00000636147 Q8N9W7 124 aa8.43□□□□□ -1.06
CLN3-244ENST00000636147 TOMM7Q9P0U1 55 aa8.43□□□□□ -1.06
CLN3-244ENST00000636147 NEXN-AS1Q8NBZ9 246 aa8.43□□□□□ -1.06
CLN3-244ENST00000636147 DUX3Q96PT4 197 aa8.43□□□□□ -1.06
CLN3-244ENST00000636147 TMEM141Q96I45 108 aa8.43□□□□□ -1.06
CLN3-244ENST00000636147 BPESC1Q9GZL8 116 aa8.43□□□□□ -1.06
CLN3-244ENST00000636147 CHD8Q9HCK8 2581 aa8.42□□□□□ -1.06
CLN3-244ENST00000636147 SUMO4Q6EEV6 95 aa8.42□□□□□ -1.06
CLN3-244ENST00000636147 MORN3Q6PF18 240 aaPredicted RBP8.42□□□□□ -1.06
CLN3-244ENST00000636147 H3BUX3 64 aa8.42□□□□□ -1.06
CLN3-244ENST00000636147 LINC01620Q4KN68 170 aa8.42□□□□□ -1.06
CLN3-244ENST00000636147 Q6ZS46 218 aa8.42□□□□□ -1.06
CLN3-244ENST00000636147 NDUFA12Q9UI09 145 aa8.42□□□□□ -1.06
CLN3-244ENST00000636147 RNASE1P07998 156 aaKnown RBP8.42□□□□□ -1.06
CLN3-244ENST00000636147 NFE4Q86UQ8 179 aa8.42□□□□□ -1.06
CLN3-244ENST00000636147 CARD19Q96LW7 228 aa8.42□□□□□ -1.06
CLN3-244ENST00000636147 MOB4Q9Y3A3 225 aa8.42□□□□□ -1.06
CLN3-244ENST00000636147 A0A0J9YY99 117 aa8.41□□□□□ -1.06
CLN3-244ENST00000636147 RS1O15537 224 aa8.41□□□□□ -1.06
CLN3-244ENST00000636147 TEX49A0A1B0GTD5 131 aa8.41□□□□□ -1.06
CLN3-244ENST00000636147 DNAL4O96015 105 aa8.41□□□□□ -1.06
CLN3-244ENST00000636147 UNQ9165/PRO28630Q6UXU0 137 aa8.41□□□□□ -1.06
CLN3-244ENST00000636147 DAND5Q8N907 189 aa8.41□□□□□ -1.06
CLN3-244ENST00000636147 ATP6V0E2Q8NHE4 81 aa8.41□□□□□ -1.06
CLN3-244ENST00000636147 ZMAT4Q9H898 229 aa8.41□□□□□ -1.06
CLN3-244ENST00000636147 RAI1Q7Z5J4 1906 aaPredicted RBP8.41□□□□□ -1.06
CLN3-244ENST00000636147 IGHV3-38A0A0C4DH36 116 aa8.41□□□□□ -1.06
CLN3-244ENST00000636147 OR13C6PQ8NH95 151 aa8.41□□□□□ -1.06
CLN3-244ENST00000636147 TRBV12-3P01733 135 aa8.4□□□□□ -1.06
CLN3-244ENST00000636147 C19orf54Q5BKX5 351 aa8.4□□□□□ -1.06
CLN3-244ENST00000636147 PRR9Q5T870 116 aa8.4□□□□□ -1.06
CLN3-244ENST00000636147 C9orf47Q6ZRZ4 202 aa8.4□□□□□ -1.06
CLN3-244ENST00000636147 PIFOQ8TCI5 191 aa8.4□□□□□ -1.06
CLN3-244ENST00000636147 PCSK5Q92824 1860 aa8.4□□□□□ -1.06
CLN3-244ENST00000636147 LY6G5BQ8NDX9 201 aa8.4□□□□□ -1.06
CLN3-244ENST00000636147 IGHV7-4-1A0A0J9YVY3 117 aa8.4□□□□□ -1.07
CLN3-244ENST00000636147 Q8N1Y9 231 aa8.4□□□□□ -1.07
CLN3-244ENST00000636147 GATA3P23771 443 aa8.39□□□□□ -1.07
CLN3-244ENST00000636147 UBE2E1P51965 193 aa8.39□□□□□ -1.07
CLN3-244ENST00000636147 CCDC140Q96MF4 163 aa8.39□□□□□ -1.07
CLN3-244ENST00000636147 IGHV3-16A0A0C4DH30 117 aa8.39□□□□□ -1.07
CLN3-244ENST00000636147 CLEC2BQ92478 149 aa8.39□□□□□ -1.07
CLN3-244ENST00000636147 ZFP36P26651 326 aaKnown RBP8.39□□□□□ -1.07
CLN3-244ENST00000636147 DAZ1Q9NQZ3 744 aaKnown RBP8.39□□□□□ -1.07
CLN3-244ENST00000636147 MYO18BQ8IUG5 2567 aa8.39□□□□□ -1.07
CLN3-244ENST00000636147 CFAP47Q6ZTR5 3102 aa8.39□□□□□ -1.07
CLN3-244ENST00000636147 TRAV13-1A0A0B4J241 112 aa8.38□□□□□ -1.07
CLN3-244ENST00000636147 LINC01587Q99440 93 aa8.38□□□□□ -1.07
CLN3-244ENST00000636147 MSRB2Q9Y3D2 182 aa8.38□□□□□ -1.07
CLN3-244ENST00000636147 NOTCH2Q04721 2471 aa8.38□□□□□ -1.07
CLN3-244ENST00000636147 TRAV4A0A0B4J268 109 aa8.38□□□□□ -1.07
CLN3-244ENST00000636147 LY6LH3BQJ8 138 aa8.38□□□□□ -1.07
CLN3-244ENST00000636147 IGHV1-69DA0A0B4J2H0 117 aa8.38□□□□□ -1.07
CLN3-244ENST00000636147 CEMP1Q6PRD7 247 aaPredicted RBP8.38□□□□□ -1.07
CLN3-244ENST00000636147 DYNLRB2Q8TF09 96 aa8.38□□□□□ -1.07
CLN3-244ENST00000636147 C20orf173Q96LM9 149 aa8.38□□□□□ -1.07
CLN3-244ENST00000636147 CNFNQ9BYD5 112 aa8.38□□□□□ -1.07
CLN3-244ENST00000636147 KALRNO60229 2985 aa8.38□□□□□ -1.07
CLN3-244ENST00000636147 SYNJ2BPP57105 145 aa8.37□□□□□ -1.07
CLN3-244ENST00000636147 SRSF2Q01130 221 aaKnown RBP8.37□□□□□ -1.07
CLN3-244ENST00000636147 C9orf153Q5TBE3 101 aa8.37□□□□□ -1.07
CLN3-244ENST00000636147 ITLN2Q8WWU7 325 aaPredicted RBP8.37□□□□□ -1.07
CLN3-244ENST00000636147 TMEM101Q96IK0 257 aa8.37□□□□□ -1.07
CLN3-244ENST00000636147 YAE1D1Q9NRH1 226 aa8.37□□□□□ -1.07
CLN3-244ENST00000636147 TRBV7-9A0A0J9YWB2 115 aa8.37□□□□□ -1.07
CLN3-244ENST00000636147 F8W735 103 aaPredicted RBP8.37□□□□□ -1.07
CLN3-244ENST00000636147 I3L3M4 83 aa8.37□□□□□ -1.07
CLN3-244ENST00000636147 CRIP2P52943 208 aaPredicted RBP8.37□□□□□ -1.07
CLN3-244ENST00000636147 NDUFV3P56181 108 aaKnown RBP8.37□□□□□ -1.07
CLN3-244ENST00000636147 HERV-K104P63124 156 aa8.37□□□□□ -1.07
CLN3-244ENST00000636147 SLC25A29Q8N8R3 303 aa8.37□□□□□ -1.07
CLN3-244ENST00000636147 ZFAND3Q9H8U3 227 aa8.37□□□□□ -1.07
CLN3-244ENST00000636147 TNRC18O15417 2968 aaPredicted RBP8.37□□□□□ -1.07
CLN3-244ENST00000636147 ADGRG4Q8IZF6 3080 aa8.37□□□□□ -1.07
CLN3-244ENST00000636147 EDA2RQ9HAV5 297 aa8.37□□□□□ -1.07
CLN3-244ENST00000636147 LENEPQ9Y5L5 61 aa8.37□□□□□ -1.07
CLN3-244ENST00000636147 TACC2O95359 2948 aa8.37□□□□□ -1.07
CLN3-244ENST00000636147 CENPVL3A0A0U1RRI6 287 aa8.36□□□□□ -1.07
CLN3-244ENST00000636147 FAM223BA6NKX1 122 aa8.36□□□□□ -1.07
CLN3-244ENST00000636147 IGHG4P01861 327 aa8.36□□□□□ -1.07
CLN3-244ENST00000636147 ATP5J2P56134 94 aa8.36□□□□□ -1.07
CLN3-244ENST00000636147 GAGE2AQ6NT46 116 aa8.36□□□□□ -1.07
CLN3-244ENST00000636147 FAM223AQ8IWN6 122 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms