RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 KRBOX1C9JBD0 128 aa9.02□□□□□ -0.97
TRIM28-211ENST00000597968 PLA2G1BP04054 148 aaKnown RBP9.02□□□□□ -0.97
TRIM28-211ENST00000597968 FAM162BQ5T6X4 162 aa9.02□□□□□ -0.97
TRIM28-211ENST00000597968 Q8N976 141 aa9.02□□□□□ -0.97
TRIM28-211ENST00000597968 SFRP2Q96HF1 295 aa9.02□□□□□ -0.97
TRIM28-211ENST00000597968 MAP1LC3BQ9GZQ8 125 aa9.02□□□□□ -0.97
TRIM28-211ENST00000597968 ARMS2P0C7Q2 107 aa9.01□□□□□ -0.97
TRIM28-211ENST00000597968 UBE2G1P62253 170 aa9.01□□□□□ -0.97
TRIM28-211ENST00000597968 ZNF674Q2M3X9 581 aa9.01□□□□□ -0.97
TRIM28-211ENST00000597968 LINC01559Q495D7 138 aa9.01□□□□□ -0.97
TRIM28-211ENST00000597968 DMRTA1Q5VZB9 504 aa9.01□□□□□ -0.97
TRIM28-211ENST00000597968 STOML3Q8TAV4 291 aa9.01□□□□□ -0.97
TRIM28-211ENST00000597968 PHLDA3Q9Y5J5 127 aa9.01□□□□□ -0.97
TRIM28-211ENST00000597968 H3BVH4 76 aa9□□□□□ -0.97
TRIM28-211ENST00000597968 TPT1P13693 172 aaKnown RBP9□□□□□ -0.97
TRIM28-211ENST00000597968 Q0VG73 95 aa9□□□□□ -0.97
TRIM28-211ENST00000597968 KCNIP4Q6PIL6 250 aa9□□□□□ -0.97
TRIM28-211ENST00000597968 DAZ4Q86SG3 579 aaKnown RBP9□□□□□ -0.97
TRIM28-211ENST00000597968 NIT1Q86X76 327 aa9□□□□□ -0.97
TRIM28-211ENST00000597968 ZFP82Q8N141 532 aa9□□□□□ -0.97
TRIM28-211ENST00000597968 ZC2HC1AQ96GY0 325 aa9□□□□□ -0.97
TRIM28-211ENST00000597968 JPT2Q9H910 190 aa9□□□□□ -0.97
TRIM28-211ENST00000597968 DAZ3Q9NR90 486 aaKnown RBP9□□□□□ -0.97
TRIM28-211ENST00000597968 Q9UF83 564 aa9□□□□□ -0.97
TRIM28-211ENST00000597968 A0A1B0GV50 99 aa8.99□□□□□ -0.97
TRIM28-211ENST00000597968 GRIFINA4D1Z8 144 aa8.99□□□□□ -0.97
TRIM28-211ENST00000597968 M0R036 132 aa8.99□□□□□ -0.97
TRIM28-211ENST00000597968 SH2D1AO60880 128 aa8.99□□□□□ -0.97
TRIM28-211ENST00000597968 LTAP01374 205 aa8.99□□□□□ -0.97
TRIM28-211ENST00000597968 S100A9P06702 114 aaKnown RBP8.99□□□□□ -0.97
TRIM28-211ENST00000597968 CXCL1P09341 107 aa8.99□□□□□ -0.97
TRIM28-211ENST00000597968 PKIAP61925 76 aa8.99□□□□□ -0.97
TRIM28-211ENST00000597968 RPL36AP83881 106 aaKnown RBP8.99□□□□□ -0.97
TRIM28-211ENST00000597968 CST9LP1Q5W188 147 aa8.99□□□□□ -0.97
TRIM28-211ENST00000597968 ATRAIDQ6UW56 229 aa8.99□□□□□ -0.97
TRIM28-211ENST00000597968 KCNRGQ8N5I3 272 aa8.99□□□□□ -0.97
TRIM28-211ENST00000597968 C14orf178Q8N769 122 aaPredicted RBP8.99□□□□□ -0.97
TRIM28-211ENST00000597968 RPL36ALQ969Q0 106 aaKnown RBP8.99□□□□□ -0.97
TRIM28-211ENST00000597968 SAMD10Q9BYL1 202 aa8.99□□□□□ -0.97
TRIM28-211ENST00000597968 FAM30AQ9NZY2 134 aa8.99□□□□□ -0.97
TRIM28-211ENST00000597968 TRBV7-3A0A075B6L6 115 aa8.98□□□□□ -0.97
TRIM28-211ENST00000597968 A0A087WX48 190 aa8.98□□□□□ -0.97
TRIM28-211ENST00000597968 TMSB15BA0A087X1C1 80 aa8.98□□□□□ -0.97
TRIM28-211ENST00000597968 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.98□□□□□ -0.97
TRIM28-211ENST00000597968 OR10G8Q8NGN5 311 aa8.98□□□□□ -0.97
TRIM28-211ENST00000597968 PAGE4O60829 102 aa8.97□□□□□ -0.97
TRIM28-211ENST00000597968 C14orf177Q52M58 125 aa8.97□□□□□ -0.97
TRIM28-211ENST00000597968 FAM74A4Q5TZK3 123 aa8.97□□□□□ -0.97
TRIM28-211ENST00000597968 DEFB104AQ8WTQ1 72 aa8.97□□□□□ -0.97
TRIM28-211ENST00000597968 SFT2D1Q8WV19 159 aa8.97□□□□□ -0.97
TRIM28-211ENST00000597968 RAB4BP61018 213 aa8.96□□□□□ -0.98
TRIM28-211ENST00000597968 UBE2D3P61077 147 aa8.96□□□□□ -0.98
TRIM28-211ENST00000597968 UBE2D2P62837 147 aa8.96□□□□□ -0.98
TRIM28-211ENST00000597968 WFDC2Q14508 124 aa8.96□□□□□ -0.98
TRIM28-211ENST00000597968 TMEM97Q5BJF2 176 aa8.96□□□□□ -0.98
TRIM28-211ENST00000597968 Q8N3U1 123 aa8.96□□□□□ -0.98
TRIM28-211ENST00000597968 FAM213BQ8TBF2 198 aa8.96□□□□□ -0.98
TRIM28-211ENST00000597968 ZNF471Q9BX82 626 aaPredicted RBP8.96□□□□□ -0.98
TRIM28-211ENST00000597968 IGKV2D-24A0A075B6R9 120 aa8.95□□□□□ -0.98
TRIM28-211ENST00000597968 RBFOX3A6NFN3 312 aa8.95□□□□□ -0.98
TRIM28-211ENST00000597968 HMSDA8MTL9 139 aa8.95□□□□□ -0.98
TRIM28-211ENST00000597968 KRTAP29-1A8MX34 341 aaPredicted RBP8.95□□□□□ -0.98
TRIM28-211ENST00000597968 UMAD1C9J7I0 102 aa8.95□□□□□ -0.98
TRIM28-211ENST00000597968 M0R381 172 aa8.95□□□□□ -0.98
TRIM28-211ENST00000597968 ZNF345Q14585 488 aa8.95□□□□□ -0.98
TRIM28-211ENST00000597968 MBD3L1Q8WWY6 194 aa8.95□□□□□ -0.98
TRIM28-211ENST00000597968 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.94□□□□□ -0.98
TRIM28-211ENST00000597968 A0A087WWL8 130 aa8.94□□□□□ -0.98
TRIM28-211ENST00000597968 TRBV6-8A0A0A6YYG3 113 aa8.94□□□□□ -0.98
TRIM28-211ENST00000597968 J3QL48 77 aa8.94□□□□□ -0.98
TRIM28-211ENST00000597968 AKR1C3P42330 323 aa8.94□□□□□ -0.98
TRIM28-211ENST00000597968 HAMPP81172 84 aa8.94□□□□□ -0.98
TRIM28-211ENST00000597968 LINC00528Q8N1L1 170 aa8.94□□□□□ -0.98
TRIM28-211ENST00000597968 BAALCQ8WXS3 180 aa8.94□□□□□ -0.98
TRIM28-211ENST00000597968 KLK12Q9UKR0 248 aa8.94□□□□□ -0.98
TRIM28-211ENST00000597968 A0A0D9SG52 128 aa8.93□□□□□ -0.98
TRIM28-211ENST00000597968 SCO2A0A1W2PP80 73 aa8.93□□□□□ -0.98
TRIM28-211ENST00000597968 KANTRA0A1W2PQU2 76 aa8.93□□□□□ -0.98
TRIM28-211ENST00000597968 BCL2L11O43521 198 aa8.93□□□□□ -0.98
TRIM28-211ENST00000597968 OR5AL1P0C617 328 aa8.93□□□□□ -0.98
TRIM28-211ENST00000597968 PRR27Q6MZM9 219 aa8.93□□□□□ -0.98
TRIM28-211ENST00000597968 UBE2WQ96B02 151 aa8.93□□□□□ -0.98
TRIM28-211ENST00000597968 CHAC1Q9BUX1 264 aa8.93□□□□□ -0.98
TRIM28-211ENST00000597968 MLST8Q9BVC4 326 aa8.93□□□□□ -0.98
TRIM28-211ENST00000597968 SSBP4Q9BWG4 385 aaPredicted RBP8.93□□□□□ -0.98
TRIM28-211ENST00000597968 C1orf43Q9BWL3 253 aa8.93□□□□□ -0.98
TRIM28-211ENST00000597968 LECT2O14960 151 aa8.92□□□□□ -0.98
TRIM28-211ENST00000597968 SNAI2O43623 268 aa8.92□□□□□ -0.98
TRIM28-211ENST00000597968 CCL20P78556 96 aa8.92□□□□□ -0.98
TRIM28-211ENST00000597968 RPL19P84098 196 aaKnown RBP8.92□□□□□ -0.98
TRIM28-211ENST00000597968 TMUB2Q71RG4 321 aa8.92□□□□□ -0.98
TRIM28-211ENST00000597968 PFDN1O60925 122 aa8.91□□□□□ -0.98
TRIM28-211ENST00000597968 CRPP02741 224 aa8.91□□□□□ -0.98
TRIM28-211ENST00000597968 H2AFB1P0C5Y9 115 aa8.91□□□□□ -0.98
TRIM28-211ENST00000597968 MIAQ16674 131 aa8.91□□□□□ -0.98
TRIM28-211ENST00000597968 SCXQ7RTU7 201 aa8.91□□□□□ -0.98
TRIM28-211ENST00000597968 VAX2Q9UIW0 290 aa8.91□□□□□ -0.98
TRIM28-211ENST00000597968 FLG2Q5D862 2391 aaPredicted RBP8.91□□□□□ -0.98
TRIM28-211ENST00000597968 TMEM262E9PQX1 116 aa8.9□□□□□ -0.98
TRIM28-211ENST00000597968 IGLV2-8P01709 118 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms