RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 IGHV3-64A0A075B6Q5 118 aa8.34□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 ASIPP42127 132 aa8.34□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 SYNJ2BPP57105 145 aa8.34□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 SHISA2Q6UWI4 295 aa8.34□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 LINC00322Q6ZN03 302 aaPredicted RBP8.34□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 TRBV12-3P01733 135 aa8.34□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 NDUFV3P56181 108 aaKnown RBP8.34□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 PMVKQ15126 192 aa8.34□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 ANKRD29Q8N6D5 301 aa8.34□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 XGP55808 180 aa8.33□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 C10orf99Q6UWK7 81 aa8.33□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 Q8N9W7 124 aa8.33□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 PRO1854Q9UHT4 67 aa8.33□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 IGKV1D-37A0A075B6S9 117 aa8.33□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 F8VRH5 84 aa8.33□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 DTX2Q86UW9 622 aa8.33□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 ATP6V0E2Q8NHE4 81 aa8.33□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 C1orf159Q96HA4 380 aa8.33□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 URB1-AS1Q96HZ7 61 aa8.33□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 TEX15Q9BXT5 2789 aa8.33□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 SRSF2Q01130 221 aaKnown RBP8.33□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 F8P00451 2351 aa8.32□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 DGAT2L7PQ6IED9 249 aa8.32□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 MRPL23Q16540 153 aaKnown RBP8.32□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 Q6ZS46 218 aa8.32□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 Q8N8P6 123 aa8.32□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 SHANK2-AS3Q9BTD1 123 aa8.32□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 IGKV2D-26A0A0A0MRZ7 120 aa8.32□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 I3L2K1 104 aa8.32□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 ODF1Q14990 250 aa8.31□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.31□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 GAGE2AQ6NT46 116 aa8.31□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 TM2D2Q9BX73 214 aa8.31□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 CELSR1Q9NYQ6 3014 aa8.31□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 A0A087WX48 190 aa8.31□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 SIGLEC15Q6ZMC9 328 aa8.31□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 C10orf105Q8TEF2 133 aa8.31□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 CELSR2Q9HCU4 2923 aa8.31□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 TRAV8-3A0A0A6YYJ7 113 aa8.3□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 GATA1P15976 413 aaPredicted RBP8.3□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 C11orf71Q6IPW1 123 aa8.3□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 LINC00477Q96M19 166 aa8.3□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 FANCD2OSQ96PS1 177 aa8.3□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 RHPN1-AS1Q9BWJ2 59 aa8.3□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 TRBV19A0A075B6N1 114 aa8.3□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 C19orf71A6NCJ1 209 aa8.3□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 VWC2LB2RUY7 222 aa8.3□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 CTSGP08311 255 aa8.3□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 LYPD1Q8N2G4 141 aa8.3□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 RNF5Q99942 180 aa8.3□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 SIRPDQ9H106 197 aa8.3□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 GATA3P23771 443 aa8.29□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 LINC01356Q8N9X3 169 aa8.29□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 PRSS22Q9GZN4 317 aa8.29□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 TMEM126AQ9H061 195 aa8.29□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 ITPR2Q14571 2701 aa8.29□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 PPP1R17O96001 155 aa8.29□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 ZFP2Q6ZN57 461 aa8.29□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 TRAV26-2A0A0B4J265 109 aa8.29□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 PRAC2D3DTV9 90 aa8.29□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 CCDC179H3BU77 68 aa8.29□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 M0R2P5 195 aa8.29□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 AVPP01185 164 aa8.29□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 NPC2P61916 151 aa8.29□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 NSUN5P1Q3KNT7 163 aa8.29□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 TRAV12-2A0A075B6T6 113 aa8.29□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 IGHV3-73A0A0B4J1V6 119 aa8.29□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 CFHR4Q92496 578 aa8.29□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 CIRBPQ14011 172 aaKnown RBP8.28□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 C2orf66Q6UXQ4 117 aa8.28□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 LINC00574Q9H8X3 128 aa8.28□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 UNQ9165/PRO28630Q6UXU0 137 aa8.28□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 ZNF843Q8N446 348 aa8.28□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 MSRB1Q9NZV6 116 aa8.28□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 DNAL4O96015 105 aa8.28□□□□□ -1.08
MSH5-SAPCD1-207ENST00000493662 OOSP1A8MZH6 123 aa8.27□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 THAP8Q8NA92 274 aa8.27□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 AGRNO00468 2067 aa8.27□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 KLHL30-AS1Q8NEE0 82 aa8.27□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 WFDC11Q8NEX6 87 aa8.27□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 FAM110DQ8TAY7 271 aaPredicted RBP8.27□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 IGLV11-55A0A075B6I3 123 aa8.27□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 CD7P09564 240 aa8.27□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 LY6G5BQ8NDX9 201 aa8.27□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 MLST8Q9BVC4 326 aa8.27□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 GP9P14770 177 aa8.26□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 PRR25Q96S07 402 aa8.26□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 FAM236AA0A1B0GUQ0 79 aa8.26□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 FAM236BA0A1B0GV22 79 aa8.26□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 TNFRSF13BO14836 293 aaPredicted RBP8.26□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 CFC1BP0CG36 223 aa8.26□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 CFC1P0CG37 223 aa8.26□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 ID1P41134 155 aa8.26□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 C14orf178Q8N769 122 aaPredicted RBP8.26□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 NF1P21359 2839 aa8.25□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 TCL1BO95988 128 aa8.25□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 EGR2P11161 476 aaPredicted RBP8.25□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 MAPKAPK5-AS1Q8N8E1 139 aa8.25□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 HRNRQ86YZ3 2850 aaPredicted RBP8.25□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 H3BRN7 92 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms