RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 MST1P26927 711 aa10.97□□□□□ -0.65
CCDC88A-201ENST00000263630 WDR86Q86TI4 376 aa10.97□□□□□ -0.65
CCDC88A-201ENST00000263630 Q8TCH9 128 aa10.97□□□□□ -0.65
CCDC88A-201ENST00000263630 HIGD1BQ9P298 99 aa10.97□□□□□ -0.65
CCDC88A-201ENST00000263630 IGHV3-30P01768 117 aa10.97□□□□□ -0.65
CCDC88A-201ENST00000263630 IGHV3-33P01772 117 aa10.97□□□□□ -0.65
CCDC88A-201ENST00000263630 IGHV3-30-3P0DP02 117 aa10.97□□□□□ -0.65
CCDC88A-201ENST00000263630 IGHV3-30-5P0DP03 117 aa10.97□□□□□ -0.65
CCDC88A-201ENST00000263630 TET2Q6N021 2002 aaPredicted RBP10.97□□□□□ -0.65
CCDC88A-201ENST00000263630 QRFPP83859 136 aa10.96□□□□□ -0.66
CCDC88A-201ENST00000263630 GNRH2O43555 120 aa10.96□□□□□ -0.66
CCDC88A-201ENST00000263630 VPREB3Q9UKI3 123 aa10.95□□□□□ -0.66
CCDC88A-201ENST00000263630 SPAG11BQ08648 103 aa10.95□□□□□ -0.66
CCDC88A-201ENST00000263630 COL18A1P39060 1754 aa10.95□□□□□ -0.66
CCDC88A-201ENST00000263630 IGLV2-23P01705 113 aa10.95□□□□□ -0.66
CCDC88A-201ENST00000263630 NUP210Q8TEM1 1887 aaPredicted RBP10.95□□□□□ -0.66
CCDC88A-201ENST00000263630 PIFOQ8TCI5 191 aa10.95□□□□□ -0.66
CCDC88A-201ENST00000263630 LYPD3O95274 346 aa10.95□□□□□ -0.66
CCDC88A-201ENST00000263630 UNQ6494/PRO21346Q6UXR6 183 aa10.94□□□□□ -0.66
CCDC88A-201ENST00000263630 Q6ZRM9 215 aa10.94□□□□□ -0.66
CCDC88A-201ENST00000263630 A0A0G2JRQ6 117 aa10.94□□□□□ -0.66
CCDC88A-201ENST00000263630 G3V4G9 280 aa10.94□□□□□ -0.66
CCDC88A-201ENST00000263630 WISP1O95388 367 aa10.94□□□□□ -0.66
CCDC88A-201ENST00000263630 HIST2H2BDQ6DRA6 164 aa10.94□□□□□ -0.66
CCDC88A-201ENST00000263630 LINC00205P59089 165 aa10.94□□□□□ -0.66
CCDC88A-201ENST00000263630 IGKV2D-26A0A0A0MRZ7 120 aa10.94□□□□□ -0.66
CCDC88A-201ENST00000263630 NDUFV3P56181 108 aaKnown RBP10.93□□□□□ -0.66
CCDC88A-201ENST00000263630 PRR30Q53SZ7 412 aaPredicted RBP10.93□□□□□ -0.66
CCDC88A-201ENST00000263630 IGHV2-5P01817 119 aa10.93□□□□□ -0.66
CCDC88A-201ENST00000263630 RETNQ9HD89 108 aa10.93□□□□□ -0.66
CCDC88A-201ENST00000263630 KIF26AQ9ULI4 1882 aaPredicted RBP10.93□□□□□ -0.66
CCDC88A-201ENST00000263630 A0A087WV48 116 aa10.93□□□□□ -0.66
CCDC88A-201ENST00000263630 GP9P14770 177 aa10.93□□□□□ -0.66
CCDC88A-201ENST00000263630 MLST8Q9BVC4 326 aa10.93□□□□□ -0.66
CCDC88A-201ENST00000263630 SPG11Q96JI7 2443 aa10.93□□□□□ -0.66
CCDC88A-201ENST00000263630 IGHV4-59P01825 116 aa10.92□□□□□ -0.66
CCDC88A-201ENST00000263630 C10orf91Q5T1B1 145 aa10.92□□□□□ -0.66
CCDC88A-201ENST00000263630 C16orf54Q6UWD8 224 aa10.92□□□□□ -0.66
CCDC88A-201ENST00000263630 C11orf86A6NJI1 115 aa10.92□□□□□ -0.66
CCDC88A-201ENST00000263630 PLXNA4Q9HCM2 1894 aa10.92□□□□□ -0.66
CCDC88A-201ENST00000263630 NPBQ8NG41 125 aa10.92□□□□□ -0.66
CCDC88A-201ENST00000263630 THSD7AQ9UPZ6 1657 aa10.91□□□□□ -0.66
CCDC88A-201ENST00000263630 LY6HO94772 140 aa10.91□□□□□ -0.66
CCDC88A-201ENST00000263630 Q0VFX4 171 aa10.91□□□□□ -0.66
CCDC88A-201ENST00000263630 TOMM6Q96B49 74 aa10.91□□□□□ -0.66
CCDC88A-201ENST00000263630 RPL39LQ96EH5 51 aaKnown RBP10.91□□□□□ -0.66
CCDC88A-201ENST00000263630 RNF138Q8WVD3 245 aa10.91□□□□□ -0.66
CCDC88A-201ENST00000263630 CD59P13987 128 aa10.91□□□□□ -0.66
CCDC88A-201ENST00000263630 CLEC2BQ92478 149 aa10.91□□□□□ -0.66
CCDC88A-201ENST00000263630 CSPG4Q6UVK1 2322 aa10.9□□□□□ -0.66
CCDC88A-201ENST00000263630 E9PLD3 99 aa10.9□□□□□ -0.66
CCDC88A-201ENST00000263630 C20orf197Q8N268 126 aa10.9□□□□□ -0.66
CCDC88A-201ENST00000263630 FAM120AOSQ5T036 256 aa10.9□□□□□ -0.66
CCDC88A-201ENST00000263630 WFDC10BQ8IUB3 73 aa10.9□□□□□ -0.66
CCDC88A-201ENST00000263630 WFDC2Q14508 124 aa10.9□□□□□ -0.66
CCDC88A-201ENST00000263630 LOXP28300 417 aaPredicted RBP10.9□□□□□ -0.67
CCDC88A-201ENST00000263630 PTPRQQ9UMZ3 2332 aa10.89□□□□□ -0.67
CCDC88A-201ENST00000263630 TEX49A0A1B0GTD5 131 aa10.89□□□□□ -0.67
CCDC88A-201ENST00000263630 ATG2AQ2TAZ0 1938 aa10.89□□□□□ -0.67
CCDC88A-201ENST00000263630 CSRP3P50461 194 aa10.89□□□□□ -0.67
CCDC88A-201ENST00000263630 RIF1Q5UIP0 2472 aaKnown RBP10.89□□□□□ -0.67
CCDC88A-201ENST00000263630 MIR7-3HGQ8N6C7 128 aa10.89□□□□□ -0.67
CCDC88A-201ENST00000263630 Q8N9L7 120 aa10.89□□□□□ -0.67
CCDC88A-201ENST00000263630 COL11A2P13942 1736 aaPredicted RBP10.88□□□□□ -0.67
CCDC88A-201ENST00000263630 EPOPA6NHQ4 379 aa10.88□□□□□ -0.67
CCDC88A-201ENST00000263630 C1orf195Q5TG92 126 aa10.88□□□□□ -0.67
CCDC88A-201ENST00000263630 TRAV26-1A0A087WT03 109 aa10.88□□□□□ -0.67
CCDC88A-201ENST00000263630 C17orf58Q2M2W7 97 aa10.88□□□□□ -0.67
CCDC88A-201ENST00000263630 SERP2Q8N6R1 65 aa10.88□□□□□ -0.67
CCDC88A-201ENST00000263630 DAND5Q8N907 189 aa10.88□□□□□ -0.67
CCDC88A-201ENST00000263630 ZNF491Q8N8L2 437 aa10.88□□□□□ -0.67
CCDC88A-201ENST00000263630 WT1-ASQ06250 92 aa10.87□□□□□ -0.67
CCDC88A-201ENST00000263630 UFSP1Q6NVU6 142 aa10.87□□□□□ -0.67
CCDC88A-201ENST00000263630 Q6ZS92 163 aa10.87□□□□□ -0.67
CCDC88A-201ENST00000263630 IGKV1-6A0A0C4DH72 117 aa10.87□□□□□ -0.67
CCDC88A-201ENST00000263630 GATA1P15976 413 aaPredicted RBP10.87□□□□□ -0.67
CCDC88A-201ENST00000263630 IGLV3-9A0A075B6K5 115 aa10.87□□□□□ -0.67
CCDC88A-201ENST00000263630 ASPHD1Q5U4P2 390 aa10.87□□□□□ -0.67
CCDC88A-201ENST00000263630 MAPK1IP1LQ8NDC0 245 aa10.86□□□□□ -0.67
CCDC88A-201ENST00000263630 GTSF1Q8WW33 167 aa10.86□□□□□ -0.67
CCDC88A-201ENST00000263630 C9orf85Q96MD7 179 aa10.86□□□□□ -0.67
CCDC88A-201ENST00000263630 OTOGLQ3ZCN5 2332 aa10.86□□□□□ -0.67
CCDC88A-201ENST00000263630 ZNRD1Q9P1U0 126 aa10.86□□□□□ -0.67
CCDC88A-201ENST00000263630 PIK3CD-AS1Q5SR53 167 aa10.86□□□□□ -0.67
CCDC88A-201ENST00000263630 MIAQ16674 131 aa10.86□□□□□ -0.67
CCDC88A-201ENST00000263630 TMEM105Q8N8V8 129 aa10.86□□□□□ -0.67
CCDC88A-201ENST00000263630 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.85□□□□□ -0.67
CCDC88A-201ENST00000263630 ZNF106Q9H2Y7 1883 aaKnown RBP10.85□□□□□ -0.67
CCDC88A-201ENST00000263630 K7EN84 100 aa10.85□□□□□ -0.67
CCDC88A-201ENST00000263630 LYPD6Q86Y78 171 aa10.85□□□□□ -0.67
CCDC88A-201ENST00000263630 MED14OSP0DP75 135 aa10.85□□□□□ -0.67
CCDC88A-201ENST00000263630 KLK12Q9UKR0 248 aa10.85□□□□□ -0.67
CCDC88A-201ENST00000263630 SDIM1Q6ZPB5 146 aa10.84□□□□□ -0.67
CCDC88A-201ENST00000263630 C7orf33Q8WU49 177 aa10.84□□□□□ -0.67
CCDC88A-201ENST00000263630 A0A0J9YXV3 536 aa10.84□□□□□ -0.67
CCDC88A-201ENST00000263630 APRG1Q8IVJ8 170 aa10.84□□□□□ -0.67
CCDC88A-201ENST00000263630 AGPAT4-IT1Q9H0P7 198 aa10.84□□□□□ -0.67
CCDC88A-201ENST00000263630 ZNF706Q9Y5V0 76 aaPredicted RBP10.84□□□□□ -0.67
CCDC88A-201ENST00000263630 CENPVL3A0A0U1RRI6 287 aa10.84□□□□□ -0.67
CCDC88A-201ENST00000263630 ZNF726P1Q15940 193 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms