RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 IGLV3-1P01715 115 aa4.79□□□□□ -1.64
VPS13D-201ENST00000011700 CGB3P0DN86 165 aa4.79□□□□□ -1.64
VPS13D-201ENST00000011700 IGLC7A0M8Q6 106 aa4.79□□□□□ -1.64
VPS13D-201ENST00000011700 DEFB131AP59861 70 aa4.79□□□□□ -1.64
VPS13D-201ENST00000011700 TMEM219Q86XT9 240 aa4.79□□□□□ -1.64
VPS13D-201ENST00000011700 GPHB5Q86YW7 130 aa4.79□□□□□ -1.64
VPS13D-201ENST00000011700 DIRC1Q969H9 104 aa4.79□□□□□ -1.64
VPS13D-201ENST00000011700 A0A0U1RRA0 63 aa4.79□□□□□ -1.64
VPS13D-201ENST00000011700 NDUFC2-KCTD14E9PQ53 114 aa4.79□□□□□ -1.64
VPS13D-201ENST00000011700 CRIPAKQ8N1N5 446 aa4.79□□□□□ -1.64
VPS13D-201ENST00000011700 FGF23Q9GZV9 251 aaPredicted RBP4.79□□□□□ -1.64
VPS13D-201ENST00000011700 IGKV1D-8A0A087WSZ0 117 aa4.79□□□□□ -1.64
VPS13D-201ENST00000011700 TINCRA0A1B0GVN0 87 aa4.79□□□□□ -1.64
VPS13D-201ENST00000011700 TGFBR3LH3BV60 316 aa4.79□□□□□ -1.64
VPS13D-201ENST00000011700 TIRAPP58753 221 aa4.79□□□□□ -1.64
VPS13D-201ENST00000011700 ZNRF2Q8NHG8 242 aa4.79□□□□□ -1.64
VPS13D-201ENST00000011700 FOXI1Q12951 378 aa4.79□□□□□ -1.64
VPS13D-201ENST00000011700 B9D2Q9BPU9 175 aa4.79□□□□□ -1.64
VPS13D-201ENST00000011700 COL27A1Q8IZC6 1860 aaPredicted RBP4.78□□□□□ -1.64
VPS13D-201ENST00000011700 SPINK13Q1W4C9 94 aa4.78□□□□□ -1.64
VPS13D-201ENST00000011700 B3GALT5-AS1P59052 145 aa4.78□□□□□ -1.64
VPS13D-201ENST00000011700 PRR20EP86478 221 aa4.78□□□□□ -1.64
VPS13D-201ENST00000011700 PRR20CP86479 221 aa4.78□□□□□ -1.64
VPS13D-201ENST00000011700 PRR20DP86480 221 aa4.78□□□□□ -1.64
VPS13D-201ENST00000011700 PRR20BP86481 221 aa4.78□□□□□ -1.64
VPS13D-201ENST00000011700 PRR20AP86496 221 aa4.78□□□□□ -1.64
VPS13D-201ENST00000011700 NSUN5P1Q3KNT7 163 aa4.78□□□□□ -1.64
VPS13D-201ENST00000011700 UPK3BQ9BT76 320 aa4.78□□□□□ -1.64
VPS13D-201ENST00000011700 K7ENP7 123 aa4.78□□□□□ -1.64
VPS13D-201ENST00000011700 DKK1O94907 266 aa4.78□□□□□ -1.64
VPS13D-201ENST00000011700 ADCYAP1P18509 176 aa4.78□□□□□ -1.64
VPS13D-201ENST00000011700 ZNF706Q9Y5V0 76 aaPredicted RBP4.78□□□□□ -1.64
VPS13D-201ENST00000011700 Q6ZUT4 128 aa4.78□□□□□ -1.64
VPS13D-201ENST00000011700 SPRY4Q9C004 299 aa4.78□□□□□ -1.64
VPS13D-201ENST00000011700 P0DMU3 169 aa4.78□□□□□ -1.64
VPS13D-201ENST00000011700 FAM231AP0DMU4 169 aa4.78□□□□□ -1.64
VPS13D-201ENST00000011700 FAM231CP0DMU5 169 aa4.78□□□□□ -1.64
VPS13D-201ENST00000011700 S4R3C0 116 aa4.78□□□□□ -1.64
VPS13D-201ENST00000011700 C15orf65H3BRN8 121 aa4.78□□□□□ -1.64
VPS13D-201ENST00000011700 TDRG1Q3Y452 100 aa4.78□□□□□ -1.64
VPS13D-201ENST00000011700 BPESC1Q9GZL8 116 aa4.78□□□□□ -1.64
VPS13D-201ENST00000011700 USP17L23D6RBM5 183 aa4.77□□□□□ -1.65
VPS13D-201ENST00000011700 GNLYP22749 145 aa4.77□□□□□ -1.65
VPS13D-201ENST00000011700 ZNF625Q96I27 306 aaPredicted RBP4.77□□□□□ -1.65
VPS13D-201ENST00000011700 NDPQ00604 133 aa4.77□□□□□ -1.65
VPS13D-201ENST00000011700 IGHV3-73A0A0B4J1V6 119 aa4.77□□□□□ -1.65
VPS13D-201ENST00000011700 G3V4G9 280 aa4.77□□□□□ -1.65
VPS13D-201ENST00000011700 ANXA2RQ3ZCQ2 193 aa4.77□□□□□ -1.65
VPS13D-201ENST00000011700 NAA38Q9BRA0 125 aaKnown RBP4.77□□□□□ -1.65
VPS13D-201ENST00000011700 COL4A5P29400 1685 aa4.77□□□□□ -1.65
VPS13D-201ENST00000011700 NFE4Q86UQ8 179 aa4.77□□□□□ -1.65
VPS13D-201ENST00000011700 ZNF491Q8N8L2 437 aa4.77□□□□□ -1.65
VPS13D-201ENST00000011700 RPL35AP18077 110 aaKnown RBP4.77□□□□□ -1.65
VPS13D-201ENST00000011700 BPTFQ12830 3046 aa4.77□□□□□ -1.65
VPS13D-201ENST00000011700 EPG5Q9HCE0 2579 aa4.77□□□□□ -1.65
VPS13D-201ENST00000011700 CRYGCP07315 174 aa4.77□□□□□ -1.65
VPS13D-201ENST00000011700 NDUFV3P56181 108 aaKnown RBP4.77□□□□□ -1.65
VPS13D-201ENST00000011700 CLUHP3Q96NS8 147 aa4.77□□□□□ -1.65
VPS13D-201ENST00000011700 COL4A4P53420 1690 aaPredicted RBP4.77□□□□□ -1.65
VPS13D-201ENST00000011700 CAMK2N2Q96S95 79 aa4.77□□□□□ -1.65
VPS13D-201ENST00000011700 LINC00474Q9P2X8 69 aa4.77□□□□□ -1.65
VPS13D-201ENST00000011700 WT1-ASQ06250 92 aa4.77□□□□□ -1.65
VPS13D-201ENST00000011700 FAM222AQ5U5X8 452 aa4.77□□□□□ -1.65
VPS13D-201ENST00000011700 UFSP1Q6NVU6 142 aa4.77□□□□□ -1.65
VPS13D-201ENST00000011700 IGF2BP2-AS1Q96M15 143 aa4.76□□□□□ -1.65
VPS13D-201ENST00000011700 LINC01548A6NM66 108 aa4.76□□□□□ -1.65
VPS13D-201ENST00000011700 F8WDY8 70 aa4.76□□□□□ -1.65
VPS13D-201ENST00000011700 MIAQ16674 131 aa4.76□□□□□ -1.65
VPS13D-201ENST00000011700 AJUBAQ96IF1 538 aa4.76□□□□□ -1.65
VPS13D-201ENST00000011700 IGHV3OR16-8A0A075B7F1 116 aa4.76□□□□□ -1.65
VPS13D-201ENST00000011700 DUX4L9Q6RFH8 374 aaPredicted RBP4.76□□□□□ -1.65
VPS13D-201ENST00000011700 IBA57-AS1B1ANH7 110 aa4.76□□□□□ -1.65
VPS13D-201ENST00000011700 CCL24O00175 119 aa4.76□□□□□ -1.65
VPS13D-201ENST00000011700 EFNA2O43921 213 aa4.76□□□□□ -1.65
VPS13D-201ENST00000011700 EIF4EBP1Q13541 118 aaPredicted RBP4.76□□□□□ -1.65
VPS13D-201ENST00000011700 C17orf58Q2M2W7 97 aa4.76□□□□□ -1.65
VPS13D-201ENST00000011700 LINC00527Q9UJ94 153 aa4.75□□□□□ -1.65
VPS13D-201ENST00000011700 TRAV3A0A0B4J244 114 aa4.75□□□□□ -1.65
VPS13D-201ENST00000011700 B5MCH6 92 aa4.75□□□□□ -1.65
VPS13D-201ENST00000011700 MRGPRG-AS1Q2M3A8 158 aa4.75□□□□□ -1.65
VPS13D-201ENST00000011700 Q6ZSR3 168 aa4.75□□□□□ -1.65
VPS13D-201ENST00000011700 BAALCQ8WXS3 180 aa4.75□□□□□ -1.65
VPS13D-201ENST00000011700 FAM201AQ5SY85 155 aa4.75□□□□□ -1.65
VPS13D-201ENST00000011700 C4orf3Q8WVX3 66 aa4.75□□□□□ -1.65
VPS13D-201ENST00000011700 Q6ZRM9 215 aa4.75□□□□□ -1.65
VPS13D-201ENST00000011700 WFDC12Q8WWY7 111 aa4.75□□□□□ -1.65
VPS13D-201ENST00000011700 C14orf132Q9NPU4 83 aa4.75□□□□□ -1.65
VPS13D-201ENST00000011700 IGHV3OR16-10A0A075B7F0 116 aa4.75□□□□□ -1.65
VPS13D-201ENST00000011700 CDPF1Q6NVV7 123 aa4.75□□□□□ -1.65
VPS13D-201ENST00000011700 C8orf49Q96NF6 230 aa4.75□□□□□ -1.65
VPS13D-201ENST00000011700 WIPF3A6NGB9 483 aa4.75□□□□□ -1.65
VPS13D-201ENST00000011700 NTN5Q8WTR8 489 aaPredicted RBP4.75□□□□□ -1.65
VPS13D-201ENST00000011700 CYYR1Q96J86 154 aa4.75□□□□□ -1.65
VPS13D-201ENST00000011700 XCL2Q9UBD3 114 aa4.75□□□□□ -1.65
VPS13D-201ENST00000011700 TP73-AS1Q9UF72 201 aa4.75□□□□□ -1.65
VPS13D-201ENST00000011700 CASC2Q6XLA1 102 aa4.75□□□□□ -1.65
VPS13D-201ENST00000011700 RNF138Q8WVD3 245 aa4.75□□□□□ -1.65
VPS13D-201ENST00000011700 BPY2O14599 106 aa4.74□□□□□ -1.65
VPS13D-201ENST00000011700 HHLA3Q9XRX5 114 aa4.74□□□□□ -1.65
VPS13D-201ENST00000011700 CRYGBP07316 175 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 107.6 ms