RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 DYNC2H1Q8NCM8 4307 aaKnown RBP13.98□□□□□ -0.17
UPF3A-211ENST00000618700 TMEM218A2RU14 115 aa13.98□□□□□ -0.17
UPF3A-211ENST00000618700 H3BVH4 76 aa13.98□□□□□ -0.17
UPF3A-211ENST00000618700 M0R2P5 195 aa13.98□□□□□ -0.17
UPF3A-211ENST00000618700 MED14OSP0DP75 135 aa13.98□□□□□ -0.17
UPF3A-211ENST00000618700 RPS20P60866 119 aaKnown RBP13.98□□□□□ -0.17
UPF3A-211ENST00000618700 ADIRFQ15847 76 aa13.98□□□□□ -0.17
UPF3A-211ENST00000618700 MUC7Q8TAX7 377 aa13.98□□□□□ -0.17
UPF3A-211ENST00000618700 RPP21Q9H633 154 aaKnown RBP13.98□□□□□ -0.17
UPF3A-211ENST00000618700 SCRT2Q9NQ03 307 aa13.98□□□□□ -0.17
UPF3A-211ENST00000618700 CSMD3Q7Z407 3707 aa13.98□□□□□ -0.17
UPF3A-211ENST00000618700 GAGE12BA1L429 117 aa13.97□□□□□ -0.17
UPF3A-211ENST00000618700 GAGE7O76087 117 aa13.97□□□□□ -0.17
UPF3A-211ENST00000618700 ARMS2P0C7Q2 107 aa13.97□□□□□ -0.17
UPF3A-211ENST00000618700 GAGE12FP0CL80 117 aa13.97□□□□□ -0.17
UPF3A-211ENST00000618700 GAGE12GP0CL81 117 aa13.97□□□□□ -0.17
UPF3A-211ENST00000618700 GAGE12IP0CL82 117 aa13.97□□□□□ -0.17
UPF3A-211ENST00000618700 ADCYAP1P18509 176 aa13.97□□□□□ -0.17
UPF3A-211ENST00000618700 RASL10AQ92737 203 aa13.97□□□□□ -0.17
UPF3A-211ENST00000618700 PTH2Q96A98 100 aa13.97□□□□□ -0.17
UPF3A-211ENST00000618700 C18orf15Q96N68 181 aa13.97□□□□□ -0.17
UPF3A-211ENST00000618700 ERVFC1-1P60608 527 aa13.96□□□□□ -0.17
UPF3A-211ENST00000618700 OSTCQ9NRP0 149 aa13.96□□□□□ -0.17
UPF3A-211ENST00000618700 MUC4Q99102 2169 aa13.96□□□□□ -0.18
UPF3A-211ENST00000618700 XKRY2A2RUG3 117 aa13.95□□□□□ -0.18
UPF3A-211ENST00000618700 SNAI2O43623 268 aa13.95□□□□□ -0.18
UPF3A-211ENST00000618700 IGLC6P0CF74 106 aa13.95□□□□□ -0.18
UPF3A-211ENST00000618700 GZMBP10144 247 aa13.95□□□□□ -0.18
UPF3A-211ENST00000618700 CT83Q5H943 113 aa13.95□□□□□ -0.18
UPF3A-211ENST00000618700 SSBP4Q9BWG4 385 aaPredicted RBP13.95□□□□□ -0.18
UPF3A-211ENST00000618700 GATCO43716 136 aaKnown RBP13.94□□□□□ -0.18
UPF3A-211ENST00000618700 PIK3CD-AS1Q5SR53 167 aa13.94□□□□□ -0.18
UPF3A-211ENST00000618700 PHLDA1Q8WV24 401 aaPredicted RBP13.94□□□□□ -0.18
UPF3A-211ENST00000618700 SFRP2Q96HF1 295 aa13.94□□□□□ -0.18
UPF3A-211ENST00000618700 NDUFAF3Q9BU61 184 aa13.94□□□□□ -0.18
UPF3A-211ENST00000618700 STARD9Q9P2P6 4700 aa13.94□□□□□ -0.18
UPF3A-211ENST00000618700 TRAV10A0A0B4J240 114 aa13.93□□□□□ -0.18
UPF3A-211ENST00000618700 OR5AL1P0C617 328 aa13.93□□□□□ -0.18
UPF3A-211ENST00000618700 PNRC1Q12796 327 aaPredicted RBP13.93□□□□□ -0.18
UPF3A-211ENST00000618700 ZNF876PQ49A33 203 aa13.93□□□□□ -0.18
UPF3A-211ENST00000618700 SEC11CQ9BY50 192 aa13.93□□□□□ -0.18
UPF3A-211ENST00000618700 TRGV2A0A075B6R0 118 aa13.92□□□□□ -0.18
UPF3A-211ENST00000618700 NXPH4O95158 308 aa13.92□□□□□ -0.18
UPF3A-211ENST00000618700 ATP5G1P05496 136 aa13.92□□□□□ -0.18
UPF3A-211ENST00000618700 C15orf54Q8N8G6 183 aa13.92□□□□□ -0.18
UPF3A-211ENST00000618700 PHLDA3Q9Y5J5 127 aa13.92□□□□□ -0.18
UPF3A-211ENST00000618700 V9GYV3 84 aa13.92□□□□□ -0.18
UPF3A-211ENST00000618700 F8W036 122 aa13.91□□□□□ -0.18
UPF3A-211ENST00000618700 FER1L6-AS1Q8NA97 138 aa13.91□□□□□ -0.18
UPF3A-211ENST00000618700 OR10AG1Q8NH19 301 aa13.91□□□□□ -0.18
UPF3A-211ENST00000618700 DEFB131BA0A096LNP1 70 aa13.9□□□□□ -0.18
UPF3A-211ENST00000618700 A0A1W2PPQ1 181 aa13.9□□□□□ -0.18
UPF3A-211ENST00000618700 NUPR2A6NF83 97 aa13.9□□□□□ -0.18
UPF3A-211ENST00000618700 CTRLP40313 264 aa13.9□□□□□ -0.18
UPF3A-211ENST00000618700 C10orf91Q5T1B1 145 aa13.9□□□□□ -0.18
UPF3A-211ENST00000618700 ZFAND6Q6FIF0 208 aa13.9□□□□□ -0.18
UPF3A-211ENST00000618700 CEMP1Q6PRD7 247 aaPredicted RBP13.9□□□□□ -0.18
UPF3A-211ENST00000618700 ZFP82Q8N141 532 aa13.9□□□□□ -0.18
UPF3A-211ENST00000618700 POM121L12Q8N7R1 296 aa13.9□□□□□ -0.18
UPF3A-211ENST00000618700 SYT8Q8NBV8 401 aa13.9□□□□□ -0.18
UPF3A-211ENST00000618700 OR10G8Q8NGN5 311 aa13.9□□□□□ -0.18
UPF3A-211ENST00000618700 TRAV4A0A0B4J268 109 aa13.89□□□□□ -0.19
UPF3A-211ENST00000618700 A8MWL6 223 aa13.89□□□□□ -0.19
UPF3A-211ENST00000618700 C3orf84H3BNL1 204 aa13.89□□□□□ -0.19
UPF3A-211ENST00000618700 GTSF1Q8WW33 167 aa13.89□□□□□ -0.19
UPF3A-211ENST00000618700 F2Z2F3 143 aa13.88□□□□□ -0.19
UPF3A-211ENST00000618700 M0R381 172 aa13.88□□□□□ -0.19
UPF3A-211ENST00000618700 RS1O15537 224 aa13.88□□□□□ -0.19
UPF3A-211ENST00000618700 HTN3P15516 51 aa13.88□□□□□ -0.19
UPF3A-211ENST00000618700 TSKUQ8WUA8 353 aa13.88□□□□□ -0.19
UPF3A-211ENST00000618700 TPPP3Q9BW30 176 aa13.88□□□□□ -0.19
UPF3A-211ENST00000618700 GFRA4Q9GZZ7 299 aa13.88□□□□□ -0.19
UPF3A-211ENST00000618700 CARHSP1Q9Y2V2 147 aaKnown RBP13.88□□□□□ -0.19
UPF3A-211ENST00000618700 HOXA5P20719 270 aa13.87□□□□□ -0.19
UPF3A-211ENST00000618700 FOXA3P55318 350 aaPredicted RBP13.87□□□□□ -0.19
UPF3A-211ENST00000618700 CFAP126Q5VTH2 177 aa13.87□□□□□ -0.19
UPF3A-211ENST00000618700 LYZL1Q6UWQ5 148 aa13.87□□□□□ -0.19
UPF3A-211ENST00000618700 ZNF479Q96JC4 524 aa13.87□□□□□ -0.19
UPF3A-211ENST00000618700 CNFNQ9BYD5 112 aa13.87□□□□□ -0.19
UPF3A-211ENST00000618700 NACAE9PAV3 2078 aa13.86□□□□□ -0.19
UPF3A-211ENST00000618700 IGHV4-4A0A075B6R2 117 aa13.86□□□□□ -0.19
UPF3A-211ENST00000618700 MUC21A0A0G2JKD1 596 aa13.86□□□□□ -0.19
UPF3A-211ENST00000618700 MUC21A0A140T8X8 626 aa13.86□□□□□ -0.19
UPF3A-211ENST00000618700 FAM231BA6NCW3 169 aa13.86□□□□□ -0.19
UPF3A-211ENST00000618700 F5H768 121 aa13.86□□□□□ -0.19
UPF3A-211ENST00000618700 IGHV3-53P01767 116 aa13.86□□□□□ -0.19
UPF3A-211ENST00000618700 CASC10Q5T4H9 136 aa13.86□□□□□ -0.19
UPF3A-211ENST00000618700 OR4C5Q8NGB2 326 aa13.86□□□□□ -0.19
UPF3A-211ENST00000618700 A8MWV9 139 aa13.85□□□□□ -0.19
UPF3A-211ENST00000618700 CACNG7P62955 275 aa13.85□□□□□ -0.19
UPF3A-211ENST00000618700 SPANXN1Q5VSR9 72 aa13.85□□□□□ -0.19
UPF3A-211ENST00000618700 WDR73Q6P4I2 378 aa13.85□□□□□ -0.19
UPF3A-211ENST00000618700 JPT2Q9H910 190 aa13.85□□□□□ -0.19
UPF3A-211ENST00000618700 PPP1R2P9O14990 202 aa13.84□□□□□ -0.19
UPF3A-211ENST00000618700 FHL2Q14192 279 aa13.84□□□□□ -0.19
UPF3A-211ENST00000618700 RNF212Q495C1 297 aa13.84□□□□□ -0.19
UPF3A-211ENST00000618700 UFSP1Q6NVU6 142 aa13.84□□□□□ -0.19
UPF3A-211ENST00000618700 FAM210BQ96KR6 192 aa13.84□□□□□ -0.19
UPF3A-211ENST00000618700 KLK5Q9Y337 293 aaPredicted RBP13.84□□□□□ -0.19
UPF3A-211ENST00000618700 PLECQ15149 4684 aaKnown RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 121.6 ms