RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 DPH3Q96FX2 82 aa11.37□□□□□ -0.59
CLK3-227ENST00000570296 MED28Q9H204 178 aa11.37□□□□□ -0.59
CLK3-227ENST00000570296 TSC22D2O75157 780 aa11.36□□□□□ -0.59
CLK3-227ENST00000570296 ARL16Q0P5N6 197 aa11.36□□□□□ -0.59
CLK3-227ENST00000570296 DIRC3C9JPN6 131 aa11.35□□□□□ -0.59
CLK3-227ENST00000570296 PVALBP20472 110 aaPredicted RBP11.35□□□□□ -0.59
CLK3-227ENST00000570296 KCNIP4Q6PIL6 250 aa11.35□□□□□ -0.59
CLK3-227ENST00000570296 SPINK6Q6UWN8 80 aa11.35□□□□□ -0.59
CLK3-227ENST00000570296 SDF2L1Q9HCN8 221 aa11.35□□□□□ -0.59
CLK3-227ENST00000570296 PLAC8Q9NZF1 115 aa11.35□□□□□ -0.59
CLK3-227ENST00000570296 PGPA6NDG6 321 aa11.34□□□□□ -0.59
CLK3-227ENST00000570296 L7N2F9 121 aa11.34□□□□□ -0.59
CLK3-227ENST00000570296 SIX6O95475 246 aa11.34□□□□□ -0.59
CLK3-227ENST00000570296 HLA-DQA1P01909 254 aa11.34□□□□□ -0.59
CLK3-227ENST00000570296 CAV2P51636 162 aa11.34□□□□□ -0.59
CLK3-227ENST00000570296 TAS2R30P59541 319 aa11.34□□□□□ -0.59
CLK3-227ENST00000570296 S100A10P60903 97 aa11.34□□□□□ -0.59
CLK3-227ENST00000570296 VAMP2P63027 116 aa11.34□□□□□ -0.59
CLK3-227ENST00000570296 SPACA4Q8TDM5 124 aa11.34□□□□□ -0.59
CLK3-227ENST00000570296 KCNS1Q96KK3 526 aa11.34□□□□□ -0.59
CLK3-227ENST00000570296 NMES1Q9C002 83 aa11.34□□□□□ -0.59
CLK3-227ENST00000570296 LSM5Q9Y4Y9 91 aaKnown RBP11.34□□□□□ -0.59
CLK3-227ENST00000570296 MBPP02686 304 aaPredicted RBP11.33□□□□□ -0.6
CLK3-227ENST00000570296 FSIP2Q5CZC0 6907 aa11.32□□□□□ -0.6
CLK3-227ENST00000570296 TRAV21A0A0B4J279 112 aa11.32□□□□□ -0.6
CLK3-227ENST00000570296 CRPP02741 224 aa11.32□□□□□ -0.6
CLK3-227ENST00000570296 CSN1S1P47710 185 aa11.32□□□□□ -0.6
CLK3-227ENST00000570296 FGF8P55075 233 aaPredicted RBP11.32□□□□□ -0.6
CLK3-227ENST00000570296 DMRTA1Q5VZB9 504 aa11.32□□□□□ -0.6
CLK3-227ENST00000570296 ENHOQ6UWT2 76 aa11.32□□□□□ -0.6
CLK3-227ENST00000570296 NBEAP1P0C6P0 100 aa11.31□□□□□ -0.6
CLK3-227ENST00000570296 PET100P0DJ07 73 aa11.31□□□□□ -0.6
CLK3-227ENST00000570296 RPL29P47914 159 aaKnown RBP11.31□□□□□ -0.6
CLK3-227ENST00000570296 CNBPP62633 177 aaKnown RBP11.31□□□□□ -0.6
CLK3-227ENST00000570296 RAB32Q13637 225 aa11.31□□□□□ -0.6
CLK3-227ENST00000570296 TMED6Q8WW62 240 aa11.31□□□□□ -0.6
CLK3-227ENST00000570296 ASB13Q8WXK3 278 aa11.31□□□□□ -0.6
CLK3-227ENST00000570296 PTH2Q96A98 100 aa11.31□□□□□ -0.6
CLK3-227ENST00000570296 IGHV3-64A0A075B6Q5 118 aa11.3□□□□□ -0.6
CLK3-227ENST00000570296 TAAR5O14804 337 aa11.3□□□□□ -0.6
CLK3-227ENST00000570296 CHTF8P0CG12 524 aa11.3□□□□□ -0.6
CLK3-227ENST00000570296 BCAP31P51572 246 aa11.3□□□□□ -0.6
CLK3-227ENST00000570296 H2BFSP57053 126 aa11.3□□□□□ -0.6
CLK3-227ENST00000570296 LRRC37A5PQ49AS3 106 aa11.3□□□□□ -0.6
CLK3-227ENST00000570296 ZFP2Q6ZN57 461 aa11.3□□□□□ -0.6
CLK3-227ENST00000570296 CLRN3Q8NCR9 226 aa11.3□□□□□ -0.6
CLK3-227ENST00000570296 IL15RAQ13261 267 aa11.29□□□□□ -0.6
CLK3-227ENST00000570296 ZNF506Q5JVG8 444 aa11.29□□□□□ -0.6
CLK3-227ENST00000570296 SLC25A2Q9BXI2 301 aa11.29□□□□□ -0.6
CLK3-227ENST00000570296 VAX2Q9UIW0 290 aa11.29□□□□□ -0.6
CLK3-227ENST00000570296 WDR83OSQ9Y284 106 aa11.29□□□□□ -0.6
CLK3-227ENST00000570296 GTSF1Q8WW33 167 aa11.28□□□□□ -0.6
CLK3-227ENST00000570296 LINC00479Q96M42 142 aa11.28□□□□□ -0.6
CLK3-227ENST00000570296 SAMD10Q9BYL1 202 aa11.28□□□□□ -0.6
CLK3-227ENST00000570296 Q9UF83 564 aa11.28□□□□□ -0.6
CLK3-227ENST00000570296 PPP1R1CQ8WVI7 109 aa11.27□□□□□ -0.61
CLK3-227ENST00000570296 PHYHIPLQ96FC7 376 aa11.27□□□□□ -0.61
CLK3-227ENST00000570296 FAM167A-AS1Q96KT0 104 aa11.27□□□□□ -0.61
CLK3-227ENST00000570296 C9orf85Q96MD7 179 aa11.27□□□□□ -0.61
CLK3-227ENST00000570296 PARLQ9H300 379 aa11.27□□□□□ -0.61
CLK3-227ENST00000570296 PGPEP1LA6NFU8 196 aa11.26□□□□□ -0.61
CLK3-227ENST00000570296 GIPP09681 153 aaPredicted RBP11.26□□□□□ -0.61
CLK3-227ENST00000570296 MIAQ16674 131 aa11.26□□□□□ -0.61
CLK3-227ENST00000570296 STX12Q86Y82 276 aa11.26□□□□□ -0.61
CLK3-227ENST00000570296 OR2T35Q8NGX2 323 aa11.26□□□□□ -0.61
CLK3-227ENST00000570296 THAP6Q8TBB0 222 aa11.26□□□□□ -0.61
CLK3-227ENST00000570296 CHAC2Q8WUX2 184 aa11.26□□□□□ -0.61
CLK3-227ENST00000570296 UQCC1Q9NVA1 299 aa11.26□□□□□ -0.61
CLK3-227ENST00000570296 MPC2O95563 127 aa11.25□□□□□ -0.61
CLK3-227ENST00000570296 Q6ZNX1 250 aa11.25□□□□□ -0.61
CLK3-227ENST00000570296 C15orf54Q8N8G6 183 aa11.25□□□□□ -0.61
CLK3-227ENST00000570296 LYRM2Q9NU23 88 aaPredicted RBP11.25□□□□□ -0.61
CLK3-227ENST00000570296 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.24□□□□□ -0.61
CLK3-227ENST00000570296 FAM24AA6NFZ4 105 aa11.24□□□□□ -0.61
CLK3-227ENST00000570296 HBG1P69891 147 aa11.24□□□□□ -0.61
CLK3-227ENST00000570296 HBG2P69892 147 aa11.24□□□□□ -0.61
CLK3-227ENST00000570296 SRSF9Q13242 221 aaKnown RBP eCLIP11.24□□□□□ -0.61
CLK3-227ENST00000570296 OR10G7Q8NGN6 311 aa11.24□□□□□ -0.61
CLK3-227ENST00000570296 FXYD5Q96DB9 178 aa11.24□□□□□ -0.61
CLK3-227ENST00000570296 A8MWV9 139 aa11.23□□□□□ -0.61
CLK3-227ENST00000570296 TMEM252Q8N6L7 170 aa11.23□□□□□ -0.61
CLK3-227ENST00000570296 C14orf178Q8N769 122 aaPredicted RBP11.23□□□□□ -0.61
CLK3-227ENST00000570296 OR5AC2Q9NZP5 309 aa11.23□□□□□ -0.61
CLK3-227ENST00000570296 CRCT1Q9UGL9 99 aa11.23□□□□□ -0.61
CLK3-227ENST00000570296 TMEM262E9PQX1 116 aa11.22□□□□□ -0.61
CLK3-227ENST00000570296 F6UZH7 168 aa11.22□□□□□ -0.61
CLK3-227ENST00000570296 SULT1A1P50225 295 aa11.22□□□□□ -0.61
CLK3-227ENST00000570296 RANP62826 216 aaKnown RBP11.22□□□□□ -0.61
CLK3-227ENST00000570296 BAXQ07812 192 aa11.22□□□□□ -0.61
CLK3-227ENST00000570296 GCSAMLQ5JQS6 135 aa11.22□□□□□ -0.61
CLK3-227ENST00000570296 MIR17HGQ75NE6 70 aa11.22□□□□□ -0.61
CLK3-227ENST00000570296 C11orf1Q9H5F2 150 aa11.22□□□□□ -0.61
CLK3-227ENST00000570296 MBD2Q9UBB5 411 aa11.22□□□□□ -0.61
CLK3-227ENST00000570296 hDV102S1A0JD36 115 aa11.21□□□□□ -0.61
CLK3-227ENST00000570296 FAM231BA6NCW3 169 aa11.21□□□□□ -0.61
CLK3-227ENST00000570296 H0YIZ8 118 aa11.21□□□□□ -0.61
CLK3-227ENST00000570296 H7C1H1 209 aa11.21□□□□□ -0.61
CLK3-227ENST00000570296 CST7O76096 145 aa11.21□□□□□ -0.61
CLK3-227ENST00000570296 ANGP03950 147 aaKnown RBP11.21□□□□□ -0.61
CLK3-227ENST00000570296 S100A11P31949 105 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms