RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 MAPKAPK5-AS1Q8N8E1 139 aa4.06□□□□□ -1.76
CD44-236ENST00000533222 RNASE6Q93091 150 aaKnown RBP4.06□□□□□ -1.76
CD44-236ENST00000533222 ESM1Q9NQ30 184 aa4.06□□□□□ -1.76
CD44-236ENST00000533222 LINC00588Q9Y4M8 146 aa4.06□□□□□ -1.76
CD44-236ENST00000533222 MYO9BQ13459 2157 aa4.06□□□□□ -1.76
CD44-236ENST00000533222 TANC2Q9HCD6 1990 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 ARID1AO14497 2285 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 TRAV41A0A0B4J266 112 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 A0A0J9YY99 117 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 TMEM223A0PJW6 202 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 SDHAF1A6NFY7 115 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 IQCF6A8MYZ5 107 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 H3BP45 60 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 M0R135 149 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 SH2D1AO60880 128 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 IGKV1-5P01602 117 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 IGLV3-27P01718 113 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 IGHV4-34P06331 123 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 CISD3P0C7P0 127 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 LINC00271P0C7V0 271 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 RNASE2P10153 161 aaKnown RBP4.05□□□□□ -1.76
CD44-236ENST00000533222 ZNF22P17026 224 aaPredicted RBP4.05□□□□□ -1.76
CD44-236ENST00000533222 TFF3Q07654 80 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 RHOHQ15669 191 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 ESRGQ1W209 222 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 TMEM30BQ3MIR4 351 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 ZNF876PQ49A33 203 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 ZNF542PQ5EBM4 170 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 FOXL2NBQ6ZUU3 175 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 NOTCH2NLQ7Z3S9 236 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 SPTSSAQ969W0 71 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 NABP2Q9BQ15 211 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 OVOL2Q9BRP0 275 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 COL5A1P20908 1838 aaPredicted RBP4.05□□□□□ -1.76
CD44-236ENST00000533222 LTBP2Q14767 1821 aa4.05□□□□□ -1.76
CD44-236ENST00000533222 A0A0G2JRQ6 117 aa4.04□□□□□ -1.76
CD44-236ENST00000533222 C19orf84I3L1E1 186 aa4.04□□□□□ -1.76
CD44-236ENST00000533222 PRSS1P07477 247 aa4.04□□□□□ -1.76
CD44-236ENST00000533222 CCL4P13236 92 aa4.04□□□□□ -1.76
CD44-236ENST00000533222 GUSBP11Q6P575 273 aa4.04□□□□□ -1.76
CD44-236ENST00000533222 UNQ9165/PRO28630Q6UXU0 137 aa4.04□□□□□ -1.76
CD44-236ENST00000533222 C16orf47Q6ZP98 133 aaPredicted RBP4.04□□□□□ -1.76
CD44-236ENST00000533222 C6orf223Q8N319 242 aa4.04□□□□□ -1.76
CD44-236ENST00000533222 PGLYRP4Q96LB8 373 aa4.04□□□□□ -1.76
CD44-236ENST00000533222 OPRPNQ99935 248 aaPredicted RBP4.04□□□□□ -1.76
CD44-236ENST00000533222 CNFNQ9BYD5 112 aa4.04□□□□□ -1.76
CD44-236ENST00000533222 Q9H3A6 140 aa4.04□□□□□ -1.76
CD44-236ENST00000533222 C11orf68Q9H3H3 251 aaKnown RBP4.04□□□□□ -1.76
CD44-236ENST00000533222 MYO7AQ13402 2215 aa4.04□□□□□ -1.76
CD44-236ENST00000533222 EML6Q6ZMW3 1958 aa4.03□□□□□ -1.76
CD44-236ENST00000533222 SNRNP200O75643 2136 aaKnown RBP4.03□□□□□ -1.76
CD44-236ENST00000533222 IGKV1D-42A0A075B6H8 117 aa4.03□□□□□ -1.76
CD44-236ENST00000533222 IGLV5-37A0A075B6J1 123 aa4.03□□□□□ -1.76
CD44-236ENST00000533222 IGKV1-9A0A0C4DH69 117 aa4.03□□□□□ -1.76
CD44-236ENST00000533222 ZNF73O43830 326 aaPredicted RBP4.03□□□□□ -1.76
CD44-236ENST00000533222 PPP1R17O96001 155 aa4.03□□□□□ -1.76
CD44-236ENST00000533222 IGKV1-39P01597 117 aa4.03□□□□□ -1.76
CD44-236ENST00000533222 IGKV1D-39P04432 117 aa4.03□□□□□ -1.76
CD44-236ENST00000533222 PIRTP0C851 137 aa4.03□□□□□ -1.76
CD44-236ENST00000533222 IAPPP10997 89 aa4.03□□□□□ -1.76
CD44-236ENST00000533222 FAM216BQ8N7L0 139 aa4.03□□□□□ -1.76
CD44-236ENST00000533222 SMCR5Q8TEV8 140 aa4.03□□□□□ -1.76
CD44-236ENST00000533222 DIRC1Q969H9 104 aa4.03□□□□□ -1.76
CD44-236ENST00000533222 KRTAP9-8Q9BYQ0 159 aa4.03□□□□□ -1.76
CD44-236ENST00000533222 RNF186Q9NXI6 227 aa4.03□□□□□ -1.76
CD44-236ENST00000533222 SHANK1Q9Y566 2161 aa4.03□□□□□ -1.76
CD44-236ENST00000533222 FREM3P0C091 2139 aa4.03□□□□□ -1.76
CD44-236ENST00000533222 BPTFQ12830 3046 aa4.02□□□□□ -1.77
CD44-236ENST00000533222 CEP192Q8TEP8 1941 aa4.02□□□□□ -1.77
CD44-236ENST00000533222 IGHV1OR21-1A0A087WYE8 117 aa4.02□□□□□ -1.77
CD44-236ENST00000533222 A0A0J9YXY3 114 aa4.02□□□□□ -1.77
CD44-236ENST00000533222 ZNF815PA8K554 130 aa4.02□□□□□ -1.77
CD44-236ENST00000533222 CRIP2P52943 208 aaPredicted RBP4.02□□□□□ -1.77
CD44-236ENST00000533222 EDDM3BP56851 147 aa4.02□□□□□ -1.77
CD44-236ENST00000533222 SEC61BP60468 96 aaKnown RBP4.02□□□□□ -1.77
CD44-236ENST00000533222 RBM3P98179 157 aaKnown RBP4.02□□□□□ -1.77
CD44-236ENST00000533222 Q8IYB0 196 aa4.02□□□□□ -1.77
CD44-236ENST00000533222 DYNAPQ8N1N2 210 aa4.02□□□□□ -1.77
CD44-236ENST00000533222 FXYD5Q96DB9 178 aa4.02□□□□□ -1.77
CD44-236ENST00000533222 SMAD5-AS1Q9Y6J3 95 aa4.02□□□□□ -1.77
CD44-236ENST00000533222 ADAMTS9Q9P2N4 1935 aa4.01□□□□□ -1.77
CD44-236ENST00000533222 COL4A6Q14031 1691 aa4.01□□□□□ -1.77
CD44-236ENST00000533222 TRAV40A0A0B4J280 105 aa4.01□□□□□ -1.77
CD44-236ENST00000533222 IGHV3OR16-9A0A0B4J2B5 98 aa4.01□□□□□ -1.77
CD44-236ENST00000533222 IGHV1-69DA0A0B4J2H0 117 aa4.01□□□□□ -1.77
CD44-236ENST00000533222 LOC101059948A0A1B0GTJ6 334 aa4.01□□□□□ -1.77
CD44-236ENST00000533222 ZNF80P51504 273 aaPredicted RBP4.01□□□□□ -1.77
CD44-236ENST00000533222 BLCAPP62952 87 aa4.01□□□□□ -1.77
CD44-236ENST00000533222 C7orf65Q6ZTY9 151 aa4.01□□□□□ -1.77
CD44-236ENST00000533222 CCL17Q92583 94 aa4.01□□□□□ -1.77
CD44-236ENST00000533222 OBSCN-AS1Q96MR7 158 aa4.01□□□□□ -1.77
CD44-236ENST00000533222 CCL13Q99616 98 aa4.01□□□□□ -1.77
CD44-236ENST00000533222 CYP4F30PQ9H0H9 118 aa4.01□□□□□ -1.77
CD44-236ENST00000533222 CCL28Q9NRJ3 127 aa4.01□□□□□ -1.77
CD44-236ENST00000533222 MPDZO75970 2070 aa4.01□□□□□ -1.77
CD44-236ENST00000533222 IGHV3OR16-10A0A075B7F0 116 aa4□□□□□ -1.77
CD44-236ENST00000533222 TMEM30CPA0ZSE6 113 aa4□□□□□ -1.77
CD44-236ENST00000533222 C11orf86A6NJI1 115 aa4□□□□□ -1.77
CD44-236ENST00000533222 TMEM256-PLSCR3K7ERE1 68 aa4□□□□□ -1.77
CD44-236ENST00000533222 CD28P10747 220 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms