RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 TMEM75Q8N9X5 138 aa9.92□□□□□ -0.82
VPS28-215ENST00000531924 ATP6V0E2Q8NHE4 81 aa9.92□□□□□ -0.82
VPS28-215ENST00000531924 SUN5Q8TC36 379 aa9.92□□□□□ -0.82
VPS28-215ENST00000531924 C11orf21Q9P2W6 132 aa9.92□□□□□ -0.82
VPS28-215ENST00000531924 TNFSF18Q9UNG2 199 aa9.92□□□□□ -0.82
VPS28-215ENST00000531924 PGPEP1LA6NFU8 196 aa9.91□□□□□ -0.82
VPS28-215ENST00000531924 GGTLC3B5MD39 225 aa9.91□□□□□ -0.82
VPS28-215ENST00000531924 LGALSLQ3ZCW2 172 aaPredicted RBP9.91□□□□□ -0.82
VPS28-215ENST00000531924 ZNF506Q5JVG8 444 aa9.91□□□□□ -0.82
VPS28-215ENST00000531924 LELP1Q5T871 98 aa9.91□□□□□ -0.82
VPS28-215ENST00000531924 Q5VSD8 79 aa9.91□□□□□ -0.82
VPS28-215ENST00000531924 DPPA3Q6W0C5 159 aa9.91□□□□□ -0.82
VPS28-215ENST00000531924 NTN5Q8WTR8 489 aaPredicted RBP9.91□□□□□ -0.82
VPS28-215ENST00000531924 PTH2Q96A98 100 aa9.91□□□□□ -0.82
VPS28-215ENST00000531924 C9orf85Q96MD7 179 aa9.91□□□□□ -0.82
VPS28-215ENST00000531924 GTSF1LQ9H1H1 148 aa9.91□□□□□ -0.82
VPS28-215ENST00000531924 A8MWV9 139 aa9.9□□□□□ -0.82
VPS28-215ENST00000531924 PTTG1O95997 202 aa9.9□□□□□ -0.82
VPS28-215ENST00000531924 IGLV2-11P01706 119 aa9.9□□□□□ -0.82
VPS28-215ENST00000531924 ASIPP42127 132 aa9.9□□□□□ -0.82
VPS28-215ENST00000531924 TM2D2Q9BX73 214 aa9.9□□□□□ -0.82
VPS28-215ENST00000531924 A0A1W2PRE2 83 aa9.89□□□□□ -0.83
VPS28-215ENST00000531924 FABP5P3A8MUU1 101 aa9.89□□□□□ -0.83
VPS28-215ENST00000531924 FAM229AH3BQW9 127 aa9.89□□□□□ -0.83
VPS28-215ENST00000531924 UBE2G2P60604 165 aa9.89□□□□□ -0.83
VPS28-215ENST00000531924 BATF3Q9NR55 127 aa9.89□□□□□ -0.83
VPS28-215ENST00000531924 FXYD6-FXYD2A0A087WZ82 144 aa9.88□□□□□ -0.83
VPS28-215ENST00000531924 TRAV34A0A0B4J273 112 aa9.88□□□□□ -0.83
VPS28-215ENST00000531924 GAGE12JA6NER3 117 aa9.88□□□□□ -0.83
VPS28-215ENST00000531924 SMR3BP02814 79 aaPredicted RBP9.88□□□□□ -0.83
VPS28-215ENST00000531924 GIPP09681 153 aaPredicted RBP9.88□□□□□ -0.83
VPS28-215ENST00000531924 RNASE3P12724 160 aaKnown RBP9.88□□□□□ -0.83
VPS28-215ENST00000531924 GAGE1Q13065 139 aa9.88□□□□□ -0.83
VPS28-215ENST00000531924 GAGE4Q13068 117 aa9.88□□□□□ -0.83
VPS28-215ENST00000531924 GAGE5Q13069 117 aa9.88□□□□□ -0.83
VPS28-215ENST00000531924 GAGE13Q4V321 117 aa9.88□□□□□ -0.83
VPS28-215ENST00000531924 ZFP2Q6ZN57 461 aa9.88□□□□□ -0.83
VPS28-215ENST00000531924 SYT8Q8NBV8 401 aa9.88□□□□□ -0.83
VPS28-215ENST00000531924 LINC00479Q96M42 142 aa9.88□□□□□ -0.83
VPS28-215ENST00000531924 ARL2-SNX15V9GYD0 113 aa9.88□□□□□ -0.83
VPS28-215ENST00000531924 CTXND1A0A1B0GTU2 59 aa9.87□□□□□ -0.83
VPS28-215ENST00000531924 LRCOL1A6NCL2 159 aa9.87□□□□□ -0.83
VPS28-215ENST00000531924 AKR1C8PQ5T2L2 129 aa9.87□□□□□ -0.83
VPS28-215ENST00000531924 RPL7L1Q6DKI1 246 aaKnown RBP9.87□□□□□ -0.83
VPS28-215ENST00000531924 Q8N814 137 aa9.87□□□□□ -0.83
VPS28-215ENST00000531924 OR2T35Q8NGX2 323 aa9.87□□□□□ -0.83
VPS28-215ENST00000531924 NKX6-2Q9C056 277 aaPredicted RBP9.87□□□□□ -0.83
VPS28-215ENST00000531924 PARLQ9H300 379 aa9.87□□□□□ -0.83
VPS28-215ENST00000531924 B4DEV8 164 aa9.86□□□□□ -0.83
VPS28-215ENST00000531924 PEX7O00628 323 aa9.86□□□□□ -0.83
VPS28-215ENST00000531924 FGF8P55075 233 aaPredicted RBP9.86□□□□□ -0.83
VPS28-215ENST00000531924 LAGE3Q14657 143 aa9.86□□□□□ -0.83
VPS28-215ENST00000531924 Q5BKY6 102 aa9.86□□□□□ -0.83
VPS28-215ENST00000531924 TOR2AQ5JU69 321 aa9.86□□□□□ -0.83
VPS28-215ENST00000531924 PIK3CD-AS1Q5SR53 167 aa9.86□□□□□ -0.83
VPS28-215ENST00000531924 TMEM70Q9BUB7 260 aa9.86□□□□□ -0.83
VPS28-215ENST00000531924 URGCP-MRPS24S4R325 110 aa9.86□□□□□ -0.83
VPS28-215ENST00000531924 A0A087WWC5 75 aa9.85□□□□□ -0.83
VPS28-215ENST00000531924 TRAV8-3A0A0A6YYJ7 113 aa9.85□□□□□ -0.83
VPS28-215ENST00000531924 IGKV3D-20A0A0C4DH25 116 aa9.85□□□□□ -0.83
VPS28-215ENST00000531924 Q6ZSN1 163 aa9.85□□□□□ -0.83
VPS28-215ENST00000531924 HIST1H2BAQ96A08 127 aa9.85□□□□□ -0.83
VPS28-215ENST00000531924 H3BVH4 76 aa9.84□□□□□ -0.83
VPS28-215ENST00000531924 M0R036 132 aa9.84□□□□□ -0.83
VPS28-215ENST00000531924 RHODO00212 210 aa9.84□□□□□ -0.83
VPS28-215ENST00000531924 UBE2G1P62253 170 aa9.84□□□□□ -0.83
VPS28-215ENST00000531924 HAMPP81172 84 aa9.84□□□□□ -0.83
VPS28-215ENST00000531924 Q86TA4 180 aa9.84□□□□□ -0.83
VPS28-215ENST00000531924 OR11H4Q8NGC9 324 aa9.84□□□□□ -0.83
VPS28-215ENST00000531924 IL36BQ9NZH7 164 aa9.84□□□□□ -0.83
VPS28-215ENST00000531924 ZNF726P1Q15940 193 aa9.83□□□□□ -0.84
VPS28-215ENST00000531924 FAM162BQ5T6X4 162 aa9.83□□□□□ -0.84
VPS28-215ENST00000531924 FAM74A4Q5TZK3 123 aa9.83□□□□□ -0.84
VPS28-215ENST00000531924 STOML3Q8TAV4 291 aa9.83□□□□□ -0.84
VPS28-215ENST00000531924 ZFP30Q9Y2G7 519 aa9.83□□□□□ -0.84
VPS28-215ENST00000531924 PHLDA3Q9Y5J5 127 aa9.83□□□□□ -0.84
VPS28-215ENST00000531924 FAT1Q14517 4588 aa9.83□□□□□ -0.84
VPS28-215ENST00000531924 GRIFINA4D1Z8 144 aa9.82□□□□□ -0.84
VPS28-215ENST00000531924 RNF222A6NCQ9 220 aa9.82□□□□□ -0.84
VPS28-215ENST00000531924 FAM74A7A6NL05 159 aa9.82□□□□□ -0.84
VPS28-215ENST00000531924 ARMS2P0C7Q2 107 aa9.82□□□□□ -0.84
VPS28-215ENST00000531924 SEC11BP0C7V7 166 aa9.82□□□□□ -0.84
VPS28-215ENST00000531924 DMRTA1Q5VZB9 504 aa9.82□□□□□ -0.84
VPS28-215ENST00000531924 KCNIP4Q6PIL6 250 aa9.82□□□□□ -0.84
VPS28-215ENST00000531924 RMI2Q96E14 147 aa9.82□□□□□ -0.84
VPS28-215ENST00000531924 FMC1Q96HJ9 113 aa9.82□□□□□ -0.84
VPS28-215ENST00000531924 SAMD10Q9BYL1 202 aa9.82□□□□□ -0.84
VPS28-215ENST00000531924 JPT2Q9H910 190 aa9.82□□□□□ -0.84
VPS28-215ENST00000531924 COX11Q9Y6N1 276 aa9.82□□□□□ -0.84
VPS28-215ENST00000531924 HERC1Q15751 4861 aa9.81□□□□□ -0.84
VPS28-215ENST00000531924 MAP1LC3B2A6NCE7 125 aa9.81□□□□□ -0.84
VPS28-215ENST00000531924 KRBOX1C9JBD0 128 aa9.81□□□□□ -0.84
VPS28-215ENST00000531924 SH2D1AO60880 128 aa9.81□□□□□ -0.84
VPS28-215ENST00000531924 TPT1P13693 172 aaKnown RBP9.81□□□□□ -0.84
VPS28-215ENST00000531924 CST9LP1Q5W188 147 aa9.81□□□□□ -0.84
VPS28-215ENST00000531924 DAZ4Q86SG3 579 aaKnown RBP9.81□□□□□ -0.84
VPS28-215ENST00000531924 Q8N3U1 123 aa9.81□□□□□ -0.84
VPS28-215ENST00000531924 C14orf178Q8N769 122 aaPredicted RBP9.81□□□□□ -0.84
VPS28-215ENST00000531924 ZC2HC1AQ96GY0 325 aa9.81□□□□□ -0.84
VPS28-215ENST00000531924 MAP1LC3BQ9GZQ8 125 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms