RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 CD70P32970 193 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 CXCL5P42830 114 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 MTPNP58546 118 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 NPC2P61916 151 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 SSBP1Q04837 148 aaKnown RBP2.29□□□□□ -2.04
CD44-217ENST00000525348 INSL4Q14641 139 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 DEFB121Q5J5C9 76 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 LINC01545Q5VT33 79 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 MIC13Q5XKP0 118 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 LCA10Q71F78 164 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 ZNF645Q8N7E2 425 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 TMEM75Q8N9X5 138 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 C11orf72Q8NBR9 251 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 OR5C1Q8NGR4 320 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 LRRC29Q8WV35 223 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 RNASE6Q93091 150 aaKnown RBP2.29□□□□□ -2.04
CD44-217ENST00000525348 RNF185Q96GF1 192 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 HDHD3Q9BSH5 251 aaPredicted RBP2.29□□□□□ -2.04
CD44-217ENST00000525348 ARL2-SNX15V9GYD0 113 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 CDH23Q9H251 3354 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 IGKV2D-24A0A075B6R9 120 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 TRAV8-1A0A0A6YYK1 113 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 IGKV1D-13A0A0B4J2D9 117 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 TRBV27A0A0K0K1C4 114 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 IRGMA1A4Y4 181 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 K7ERJ3 54 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 M0R381 172 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 ATOX1O00244 68 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 CCL16O15467 120 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 IGKV1-13P0DP09 117 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 LINC00313P59037 77 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 PRR3P79522 188 aaKnown RBP2.28□□□□□ -2.04
CD44-217ENST00000525348 CCL8P80075 99 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 MRPS36P82909 103 aaKnown RBP2.28□□□□□ -2.04
CD44-217ENST00000525348 ABCA11PQ4W5N1 156 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 ZFP2Q6ZN57 461 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 SDIM1Q6ZPB5 146 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 PHF5AQ7RTV0 110 aaKnown RBP2.28□□□□□ -2.04
CD44-217ENST00000525348 FAM19A2Q8N3H0 131 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 Q8N8P6 123 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 ZNF563Q8TA94 476 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 H1FXQ92522 213 aaKnown RBP2.28□□□□□ -2.04
CD44-217ENST00000525348 C2orf50Q96LR7 162 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 CALYQ9NYX4 217 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 LINC00474Q9P2X8 69 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 CKLFQ9UBR5 152 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 LINC00527Q9UJ94 153 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 SLC25A15Q9Y619 301 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 DOCK11Q5JSL3 2073 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 WDFY4Q6ZS81 3184 aa2.28□□□□□ -2.04
CD44-217ENST00000525348 ZFHX4Q86UP3 3567 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 MUC6Q6W4X9 2439 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 A0A1W2PQD3 144 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 TCRBV4S1A1TA0A5B7 111 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 C19orf71A6NCJ1 209 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 PGPA6NDG6 321 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 A6NDX4 124 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 IBA57-AS1B1ANH7 110 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 PRH1P02810 166 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 RBMY1CP0DJD4 496 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 CCL23P55773 120 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 UBE2D3P61077 147 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 UBE2D2P62837 147 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 LYPD5Q6UWN5 251 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 PRNTQ86SH4 94 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 SERP2Q8N6R1 65 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 Q8N9W7 124 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 MORN4Q8NDC4 146 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 TMEM230Q96A57 120 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 ZNF286AQ9HBT8 521 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 ZNF492Q9P255 531 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 USP34Q70CQ2 3546 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 LCTP09848 1927 aa2.27□□□□□ -2.05
CD44-217ENST00000525348 DNAH12Q6ZR08 3092 aa2.26□□□□□ -2.05
CD44-217ENST00000525348 BAHCC1Q9P281 2608 aa2.26□□□□□ -2.05
CD44-217ENST00000525348 XIRP2A4UGR9 3374 aa2.26□□□□□ -2.05
CD44-217ENST00000525348 TRAV8-3A0A0A6YYJ7 113 aa2.26□□□□□ -2.05
CD44-217ENST00000525348 IGHV1-24A0A0C4DH33 117 aa2.26□□□□□ -2.05
CD44-217ENST00000525348 LRCOL1A6NCL2 159 aa2.26□□□□□ -2.05
CD44-217ENST00000525348 TMEM256-PLSCR3K7ERE1 68 aa2.26□□□□□ -2.05
CD44-217ENST00000525348 NDUFB3O43676 98 aa2.26□□□□□ -2.05
CD44-217ENST00000525348 CST7O76096 145 aa2.26□□□□□ -2.05
CD44-217ENST00000525348 HLA-DQA1P01909 254 aa2.26□□□□□ -2.05
CD44-217ENST00000525348 SCGB1C2P0DMR2 95 aa2.26□□□□□ -2.05
CD44-217ENST00000525348 GCHFRP30047 84 aa2.26□□□□□ -2.05
CD44-217ENST00000525348 HERVK_113P61574 105 aa2.26□□□□□ -2.05
CD44-217ENST00000525348 EIF4EBP1Q13541 118 aaPredicted RBP2.26□□□□□ -2.05
CD44-217ENST00000525348 NSUN5P1Q3KNT7 163 aa2.26□□□□□ -2.05
CD44-217ENST00000525348 CLEC19AQ6UXS0 136 aa2.26□□□□□ -2.05
CD44-217ENST00000525348 LINC00173Q6ZV60 143 aa2.26□□□□□ -2.05
CD44-217ENST00000525348 GPHB5Q86YW7 130 aa2.26□□□□□ -2.05
CD44-217ENST00000525348 COPS9Q8WXC6 57 aa2.26□□□□□ -2.05
CD44-217ENST00000525348 TRGV9Q99603 122 aa2.26□□□□□ -2.05
CD44-217ENST00000525348 SMIM7Q9BQ49 75 aa2.26□□□□□ -2.05
CD44-217ENST00000525348 NXT2Q9NPJ8 142 aaKnown RBP2.26□□□□□ -2.05
CD44-217ENST00000525348 KMT2BQ9UMN6 2715 aaPredicted RBP2.26□□□□□ -2.05
CD44-217ENST00000525348 IGKV1-9A0A0C4DH69 117 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 A0A0G2JRQ6 117 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 UBE2L5PA0A1B0GUS4 154 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 RBMY1BA6NDE4 496 aaKnown RBP2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms