RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 IGHV4OR15-8A0A075B7B6 117 aa12.67□□□□□ -0.38
PCDHA3-201ENST00000522353 A0A087WW49 117 aa12.67□□□□□ -0.38
PCDHA3-201ENST00000522353 K7EMI3 77 aa12.66□□□□□ -0.38
PCDHA3-201ENST00000522353 IGHG2P01859 326 aa12.66□□□□□ -0.38
PCDHA3-201ENST00000522353 COX11Q9Y6N1 276 aa12.66□□□□□ -0.38
PCDHA3-201ENST00000522353 MRPL35Q9NZE8 188 aaKnown RBP12.66□□□□□ -0.38
PCDHA3-201ENST00000522353 C2orf70A6NJV1 201 aa12.66□□□□□ -0.38
PCDHA3-201ENST00000522353 IGKV1-17P01599 117 aa12.66□□□□□ -0.38
PCDHA3-201ENST00000522353 IGLV1-47P01700 117 aa12.66□□□□□ -0.38
PCDHA3-201ENST00000522353 ADAMTSL5Q6ZMM2 481 aa12.66□□□□□ -0.38
PCDHA3-201ENST00000522353 C16orf54Q6UWD8 224 aa12.66□□□□□ -0.38
PCDHA3-201ENST00000522353 GPHB5Q86YW7 130 aa12.65□□□□□ -0.38
PCDHA3-201ENST00000522353 XCL1P47992 114 aa12.65□□□□□ -0.38
PCDHA3-201ENST00000522353 ATP6V0E2Q8NHE4 81 aa12.65□□□□□ -0.38
PCDHA3-201ENST00000522353 GYPEP15421 78 aa12.65□□□□□ -0.38
PCDHA3-201ENST00000522353 SCRT2Q9NQ03 307 aa12.65□□□□□ -0.38
PCDHA3-201ENST00000522353 TAL2Q16559 108 aa12.65□□□□□ -0.39
PCDHA3-201ENST00000522353 KLK5Q9Y337 293 aaPredicted RBP12.65□□□□□ -0.39
PCDHA3-201ENST00000522353 SIRPDQ9H106 197 aa12.64□□□□□ -0.39
PCDHA3-201ENST00000522353 COX8AP10176 69 aa12.64□□□□□ -0.39
PCDHA3-201ENST00000522353 Q8N7P7 452 aa12.64□□□□□ -0.39
PCDHA3-201ENST00000522353 BUB3O43684 328 aa12.64□□□□□ -0.39
PCDHA3-201ENST00000522353 IGLC2P0DOY2 106 aa12.64□□□□□ -0.39
PCDHA3-201ENST00000522353 IGLC3P0DOY3 106 aa12.64□□□□□ -0.39
PCDHA3-201ENST00000522353 Q6ZQT7 251 aa12.64□□□□□ -0.39
PCDHA3-201ENST00000522353 C4orf3Q8WVX3 66 aa12.64□□□□□ -0.39
PCDHA3-201ENST00000522353 EGR2P11161 476 aaPredicted RBP12.63□□□□□ -0.39
PCDHA3-201ENST00000522353 EDA2RQ9HAV5 297 aa12.63□□□□□ -0.39
PCDHA3-201ENST00000522353 IL17DQ8TAD2 202 aa12.63□□□□□ -0.39
PCDHA3-201ENST00000522353 CFHR4Q92496 578 aa12.63□□□□□ -0.39
PCDHA3-201ENST00000522353 TRAV13-2A0A0B4J235 113 aa12.63□□□□□ -0.39
PCDHA3-201ENST00000522353 NAV2Q8IVL1 2488 aa12.63□□□□□ -0.39
PCDHA3-201ENST00000522353 J3QQQ9 107 aa12.62□□□□□ -0.39
PCDHA3-201ENST00000522353 DYSFO75923 2080 aa12.62□□□□□ -0.39
PCDHA3-201ENST00000522353 NCOR2Q9Y618 2525 aa12.62□□□□□ -0.39
PCDHA3-201ENST00000522353 CCDC168Q8NDH2 2452 aa12.62□□□□□ -0.39
PCDHA3-201ENST00000522353 Q6ZWC4 215 aa12.62□□□□□ -0.39
PCDHA3-201ENST00000522353 SPANXA1Q9NS26 97 aa12.62□□□□□ -0.39
PCDHA3-201ENST00000522353 CRYGCP07315 174 aa12.62□□□□□ -0.39
PCDHA3-201ENST00000522353 EML6Q6ZMW3 1958 aa12.62□□□□□ -0.39
PCDHA3-201ENST00000522353 TNFRSF13BO14836 293 aaPredicted RBP12.61□□□□□ -0.39
PCDHA3-201ENST00000522353 RBMY1FQ15415 496 aaKnown RBP12.61□□□□□ -0.39
PCDHA3-201ENST00000522353 CITED2Q99967 270 aaPredicted RBP12.61□□□□□ -0.39
PCDHA3-201ENST00000522353 CRLF1O75462 422 aa12.61□□□□□ -0.39
PCDHA3-201ENST00000522353 K7EQD1 137 aa12.61□□□□□ -0.39
PCDHA3-201ENST00000522353 PRO1854Q9UHT4 67 aa12.61□□□□□ -0.39
PCDHA3-201ENST00000522353 C9orf118A6NHY6 69 aa12.6□□□□□ -0.39
PCDHA3-201ENST00000522353 RITA1Q96K30 269 aa12.6□□□□□ -0.39
PCDHA3-201ENST00000522353 LYPD6BQ8NI32 183 aa12.6□□□□□ -0.39
PCDHA3-201ENST00000522353 DNAJC9-AS1A6NH13 148 aa12.6□□□□□ -0.39
PCDHA3-201ENST00000522353 DAZ2Q13117 558 aaKnown RBP12.6□□□□□ -0.39
PCDHA3-201ENST00000522353 DAZ4Q86SG3 579 aaKnown RBP12.6□□□□□ -0.39
PCDHA3-201ENST00000522353 DAZ3Q9NR90 486 aaKnown RBP12.6□□□□□ -0.39
PCDHA3-201ENST00000522353 FGF6P10767 208 aa12.6□□□□□ -0.39
PCDHA3-201ENST00000522353 IGLL1P15814 213 aa12.6□□□□□ -0.39
PCDHA3-201ENST00000522353 SPINK8P0C7L1 97 aa12.59□□□□□ -0.39
PCDHA3-201ENST00000522353 UBL5Q9BZL1 73 aa12.59□□□□□ -0.39
PCDHA3-201ENST00000522353 A6NDX4 124 aa12.59□□□□□ -0.39
PCDHA3-201ENST00000522353 TM2D2Q9BX73 214 aa12.59□□□□□ -0.39
PCDHA3-201ENST00000522353 SLC25A29Q8N8R3 303 aa12.59□□□□□ -0.39
PCDHA3-201ENST00000522353 GTSF1LQ9H1H1 148 aa12.59□□□□□ -0.39
PCDHA3-201ENST00000522353 RNASE13Q5GAN3 156 aaKnown RBP12.58□□□□□ -0.4
PCDHA3-201ENST00000522353 UTF1Q5T230 341 aa12.58□□□□□ -0.4
PCDHA3-201ENST00000522353 CAMK2N2Q96S95 79 aa12.58□□□□□ -0.4
PCDHA3-201ENST00000522353 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.58□□□□□ -0.4
PCDHA3-201ENST00000522353 IGKV2-29A2NJV5 120 aaPredicted RBP12.58□□□□□ -0.4
PCDHA3-201ENST00000522353 F8W735 103 aaPredicted RBP12.58□□□□□ -0.4
PCDHA3-201ENST00000522353 K7EN84 100 aa12.58□□□□□ -0.4
PCDHA3-201ENST00000522353 DEFB135Q30KP9 77 aa12.58□□□□□ -0.4
PCDHA3-201ENST00000522353 BOD1L2Q8IYS8 172 aa12.58□□□□□ -0.4
PCDHA3-201ENST00000522353 PPDPFLQ8WWR9 84 aa12.57□□□□□ -0.4
PCDHA3-201ENST00000522353 SIVA1O15304 175 aa12.57□□□□□ -0.4
PCDHA3-201ENST00000522353 LMO4P61968 165 aa12.57□□□□□ -0.4
PCDHA3-201ENST00000522353 SUMO4Q6EEV6 95 aa12.57□□□□□ -0.4
PCDHA3-201ENST00000522353 MORN5Q5VZ52 161 aa12.56□□□□□ -0.4
PCDHA3-201ENST00000522353 TEX22C9J3V5 150 aa12.56□□□□□ -0.4
PCDHA3-201ENST00000522353 HERV-K104P63124 156 aa12.56□□□□□ -0.4
PCDHA3-201ENST00000522353 WISP2O76076 250 aa12.56□□□□□ -0.4
PCDHA3-201ENST00000522353 C5orf38Q86SI9 138 aa12.55□□□□□ -0.4
PCDHA3-201ENST00000522353 CEND1Q8N111 149 aa12.55□□□□□ -0.4
PCDHA3-201ENST00000522353 HIVEP3Q5T1R4 2406 aa12.55□□□□□ -0.4
PCDHA3-201ENST00000522353 F8W1H4 67 aa12.55□□□□□ -0.4
PCDHA3-201ENST00000522353 C19orf84I3L1E1 186 aa12.55□□□□□ -0.4
PCDHA3-201ENST00000522353 IGHV3-30P01768 117 aa12.55□□□□□ -0.4
PCDHA3-201ENST00000522353 IGHV3-33P01772 117 aa12.55□□□□□ -0.4
PCDHA3-201ENST00000522353 IGHV3-30-3P0DP02 117 aa12.55□□□□□ -0.4
PCDHA3-201ENST00000522353 IGHV3-30-5P0DP03 117 aa12.55□□□□□ -0.4
PCDHA3-201ENST00000522353 MSMPQ1L6U9 139 aa12.55□□□□□ -0.4
PCDHA3-201ENST00000522353 ZNF503Q96F45 646 aa12.55□□□□□ -0.4
PCDHA3-201ENST00000522353 WI2-2373I1.2A0A1W2PRP0 233 aa12.54□□□□□ -0.4
PCDHA3-201ENST00000522353 COX7A2LO14548 114 aa12.54□□□□□ -0.4
PCDHA3-201ENST00000522353 AMTNQ6UX39 209 aa12.54□□□□□ -0.4
PCDHA3-201ENST00000522353 NDUFA11Q86Y39 141 aa12.54□□□□□ -0.4
PCDHA3-201ENST00000522353 SORL1Q92673 2214 aa12.54□□□□□ -0.4
PCDHA3-201ENST00000522353 DSCR8Q96T75 97 aa12.54□□□□□ -0.4
PCDHA3-201ENST00000522353 ZNF747Q9BV97 191 aa12.54□□□□□ -0.4
PCDHA3-201ENST00000522353 SPANXDQ9BXN6 97 aa12.54□□□□□ -0.4
PCDHA3-201ENST00000522353 HHLA3Q9XRX5 114 aa12.54□□□□□ -0.4
PCDHA3-201ENST00000522353 RPL18AQ02543 176 aaKnown RBP12.54□□□□□ -0.4
PCDHA3-201ENST00000522353 BVES-AS1Q5T3Y7 98 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms