RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 GPN1Q9HCN4 374 aaPredicted RBP4.96□□□□□ -1.62
USP54-211ENST00000474929 TRAV1-1A0A0B4J248 108 aa4.95□□□□□ -1.62
USP54-211ENST00000474929 TRBV7-9A0A0J9YWB2 115 aa4.95□□□□□ -1.62
USP54-211ENST00000474929 PRAC2D3DTV9 90 aa4.95□□□□□ -1.62
USP54-211ENST00000474929 GOSR2O14653 212 aa4.95□□□□□ -1.62
USP54-211ENST00000474929 TSC22D2O75157 780 aa4.95□□□□□ -1.62
USP54-211ENST00000474929 CST7O76096 145 aa4.95□□□□□ -1.62
USP54-211ENST00000474929 RPL13AP40429 203 aaKnown RBP4.95□□□□□ -1.62
USP54-211ENST00000474929 CAV2P51636 162 aa4.95□□□□□ -1.62
USP54-211ENST00000474929 TAS2R30P59541 319 aa4.95□□□□□ -1.62
USP54-211ENST00000474929 RAB32Q13637 225 aa4.95□□□□□ -1.62
USP54-211ENST00000474929 PXDC1Q5TGL8 231 aa4.95□□□□□ -1.62
USP54-211ENST00000474929 Q6ZQT7 251 aa4.95□□□□□ -1.62
USP54-211ENST00000474929 CYP2G1PQ6ZSU1 146 aa4.95□□□□□ -1.62
USP54-211ENST00000474929 FAM19A4Q96LR4 140 aa4.95□□□□□ -1.62
USP54-211ENST00000474929 NPVFQ9HCQ7 196 aa4.95□□□□□ -1.62
USP54-211ENST00000474929 MGAT4CQ9UBM8 478 aa4.95□□□□□ -1.62
USP54-211ENST00000474929 SSNA1O43805 119 aa4.94□□□□□ -1.62
USP54-211ENST00000474929 ZNF253O75346 499 aa4.94□□□□□ -1.62
USP54-211ENST00000474929 IFNA7P01567 189 aa4.94□□□□□ -1.62
USP54-211ENST00000474929 LINC00869P0C866 280 aa4.94□□□□□ -1.62
USP54-211ENST00000474929 PVALBP20472 110 aaPredicted RBP4.94□□□□□ -1.62
USP54-211ENST00000474929 SLC38A11Q08AI6 406 aa4.94□□□□□ -1.62
USP54-211ENST00000474929 IL15RAQ13261 267 aa4.94□□□□□ -1.62
USP54-211ENST00000474929 MIAQ16674 131 aa4.94□□□□□ -1.62
USP54-211ENST00000474929 LRRC37A5PQ49AS3 106 aa4.94□□□□□ -1.62
USP54-211ENST00000474929 TMEM78Q5T7P6 136 aa4.94□□□□□ -1.62
USP54-211ENST00000474929 LINC00474Q9P2X8 69 aa4.94□□□□□ -1.62
USP54-211ENST00000474929 PRELID1Q9Y255 219 aa4.94□□□□□ -1.62
USP54-211ENST00000474929 IGHV3-16A0A0C4DH30 117 aa4.93□□□□□ -1.62
USP54-211ENST00000474929 MRPS12O15235 138 aaKnown RBP4.93□□□□□ -1.62
USP54-211ENST00000474929 HIST1H1EP10412 219 aaKnown RBP4.93□□□□□ -1.62
USP54-211ENST00000474929 FGF8P55075 233 aaPredicted RBP4.93□□□□□ -1.62
USP54-211ENST00000474929 PKIAP61925 76 aa4.93□□□□□ -1.62
USP54-211ENST00000474929 FAM159AQ6UWV7 190 aa4.93□□□□□ -1.62
USP54-211ENST00000474929 ZNF546Q86UE3 836 aa4.93□□□□□ -1.62
USP54-211ENST00000474929 TMEM252Q8N6L7 170 aa4.93□□□□□ -1.62
USP54-211ENST00000474929 TMEM75Q8N9X5 138 aa4.93□□□□□ -1.62
USP54-211ENST00000474929 ARL6Q9H0F7 186 aa4.93□□□□□ -1.62
USP54-211ENST00000474929 MED28Q9H204 178 aa4.93□□□□□ -1.62
USP54-211ENST00000474929 C11orf1Q9H5F2 150 aa4.93□□□□□ -1.62
USP54-211ENST00000474929 hDV102S1A0JD36 115 aa4.92□□□□□ -1.62
USP54-211ENST00000474929 IGSF23A1L1A6 192 aa4.92□□□□□ -1.62
USP54-211ENST00000474929 SLC17A3O00476 420 aa4.92□□□□□ -1.62
USP54-211ENST00000474929 AGPAT2O15120 278 aa4.92□□□□□ -1.62
USP54-211ENST00000474929 SNRPCP09234 159 aaKnown RBP4.92□□□□□ -1.62
USP54-211ENST00000474929 CRYGAP11844 174 aa4.92□□□□□ -1.62
USP54-211ENST00000474929 NHLH2Q02577 135 aa4.92□□□□□ -1.62
USP54-211ENST00000474929 MAJINQ3KP22 176 aa4.92□□□□□ -1.62
USP54-211ENST00000474929 PATE2Q6UY27 113 aa4.92□□□□□ -1.62
USP54-211ENST00000474929 ARL6IP6Q8N6S5 226 aa4.92□□□□□ -1.62
USP54-211ENST00000474929 STPG4Q8N801 248 aa4.92□□□□□ -1.62
USP54-211ENST00000474929 PRR26Q8N8Z3 221 aa4.92□□□□□ -1.62
USP54-211ENST00000474929 FER1L6-AS1Q8NA97 138 aa4.92□□□□□ -1.62
USP54-211ENST00000474929 GGACTQ9BVM4 153 aa4.92□□□□□ -1.62
USP54-211ENST00000474929 ARV1Q9H2C2 271 aa4.92□□□□□ -1.62
USP54-211ENST00000474929 CDIP1Q9H305 208 aa4.92□□□□□ -1.62
USP54-211ENST00000474929 MED9Q9NWA0 146 aa4.92□□□□□ -1.62
USP54-211ENST00000474929 OR5AC2Q9NZP5 309 aa4.92□□□□□ -1.62
USP54-211ENST00000474929 ALG5Q9Y673 324 aa4.92□□□□□ -1.62
USP54-211ENST00000474929 LINC00862A6NCI5 91 aa4.91□□□□□ -1.62
USP54-211ENST00000474929 FNDC10F2Z333 226 aa4.91□□□□□ -1.62
USP54-211ENST00000474929 H0YIZ8 118 aa4.91□□□□□ -1.62
USP54-211ENST00000474929 NDUFS6O75380 124 aaKnown RBP4.91□□□□□ -1.62
USP54-211ENST00000474929 LINC00694P0DN24 101 aa4.91□□□□□ -1.62
USP54-211ENST00000474929 S100A11P31949 105 aa4.91□□□□□ -1.62
USP54-211ENST00000474929 CAMLGP49069 296 aa4.91□□□□□ -1.62
USP54-211ENST00000474929 SULT1A1P50225 295 aa4.91□□□□□ -1.62
USP54-211ENST00000474929 UBE2D1P51668 147 aa4.91□□□□□ -1.62
USP54-211ENST00000474929 ZNF138P52744 262 aa4.91□□□□□ -1.62
USP54-211ENST00000474929 H2BFSP57053 126 aa4.91□□□□□ -1.62
USP54-211ENST00000474929 CYCSP99999 105 aaKnown RBP4.91□□□□□ -1.62
USP54-211ENST00000474929 MIC13Q5XKP0 118 aa4.91□□□□□ -1.62
USP54-211ENST00000474929 STX12Q86Y82 276 aa4.91□□□□□ -1.62
USP54-211ENST00000474929 ZFAND2AQ8N6M9 145 aa4.91□□□□□ -1.62
USP54-211ENST00000474929 DIRC1Q969H9 104 aa4.91□□□□□ -1.62
USP54-211ENST00000474929 DNAJC30Q96LL9 226 aa4.91□□□□□ -1.62
USP54-211ENST00000474929 MGST2Q99735 147 aa4.91□□□□□ -1.62
USP54-211ENST00000474929 LYRM2Q9NU23 88 aaPredicted RBP4.91□□□□□ -1.62
USP54-211ENST00000474929 UQCC1Q9NVA1 299 aa4.91□□□□□ -1.62
USP54-211ENST00000474929 UBE2L5PA0A1B0GUS4 154 aa4.9□□□□□ -1.63
USP54-211ENST00000474929 HMSDA8MTL9 139 aa4.9□□□□□ -1.63
USP54-211ENST00000474929 H3BTX0 84 aa4.9□□□□□ -1.63
USP54-211ENST00000474929 COX7A2P2O60397 106 aa4.9□□□□□ -1.63
USP54-211ENST00000474929 GIPP09681 153 aaPredicted RBP4.9□□□□□ -1.63
USP54-211ENST00000474929 FGF7P21781 194 aa4.9□□□□□ -1.63
USP54-211ENST00000474929 HBG1P69891 147 aa4.9□□□□□ -1.63
USP54-211ENST00000474929 HBG2P69892 147 aa4.9□□□□□ -1.63
USP54-211ENST00000474929 BAXQ07812 192 aa4.9□□□□□ -1.63
USP54-211ENST00000474929 ATP6V1FQ16864 119 aa4.9□□□□□ -1.63
USP54-211ENST00000474929 FAM162BQ5T6X4 162 aa4.9□□□□□ -1.63
USP54-211ENST00000474929 Q6ZRG5 221 aa4.9□□□□□ -1.63
USP54-211ENST00000474929 LINC00305Q7Z4B0 112 aa4.9□□□□□ -1.63
USP54-211ENST00000474929 PPP1R1CQ8WVI7 109 aa4.9□□□□□ -1.63
USP54-211ENST00000474929 SAT2Q96F10 170 aaPredicted RBP4.9□□□□□ -1.63
USP54-211ENST00000474929 KRTAP4-7Q9BYR0 210 aa4.9□□□□□ -1.63
USP54-211ENST00000474929 NMES1Q9C002 83 aa4.9□□□□□ -1.63
USP54-211ENST00000474929 WDR83OSQ9Y284 106 aa4.9□□□□□ -1.63
USP54-211ENST00000474929 MUC17Q685J3 4493 aa4.9□□□□□ -1.63
USP54-211ENST00000474929 IGLV10-54A0A075B6I4 117 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms