RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 LINC00310P59036 64 aa11.1□□□□□ -0.63
CCDC47-201ENST00000225726 Q6ZWC4 215 aa11.1□□□□□ -0.63
CCDC47-201ENST00000225726 GTSF1LQ9H1H1 148 aa11.1□□□□□ -0.63
CCDC47-201ENST00000225726 NOTCH2Q04721 2471 aa11.09□□□□□ -0.63
CCDC47-201ENST00000225726 SERF1AO75920 110 aa11.09□□□□□ -0.63
CCDC47-201ENST00000225726 AMMECR1LQ6DCA0 310 aa11.09□□□□□ -0.63
CCDC47-201ENST00000225726 C18orf32Q8TCD1 76 aa11.09□□□□□ -0.63
CCDC47-201ENST00000225726 CD300EQ496F6 205 aaPredicted RBP11.08□□□□□ -0.64
CCDC47-201ENST00000225726 TWIST1Q15672 202 aa11.08□□□□□ -0.64
CCDC47-201ENST00000225726 SPAG8Q99932 426 aaPredicted RBP11.08□□□□□ -0.64
CCDC47-201ENST00000225726 MUC21A0A0G2JKD1 596 aa11.08□□□□□ -0.64
CCDC47-201ENST00000225726 MUC21A0A140T8X8 626 aa11.08□□□□□ -0.64
CCDC47-201ENST00000225726 SNAI2O43623 268 aa11.08□□□□□ -0.64
CCDC47-201ENST00000225726 KIR3DS1Q14943 382 aa11.08□□□□□ -0.64
CCDC47-201ENST00000225726 MUC21Q5SSG8 566 aa11.08□□□□□ -0.64
CCDC47-201ENST00000225726 KIR2DL5BA0A0G2JN68 375 aa11.07□□□□□ -0.64
CCDC47-201ENST00000225726 KIR2DL5BA0A0G2JPC4 375 aa11.07□□□□□ -0.64
CCDC47-201ENST00000225726 OR4C46A6NHA9 309 aa11.07□□□□□ -0.64
CCDC47-201ENST00000225726 OR5AL1P0C617 328 aa11.07□□□□□ -0.64
CCDC47-201ENST00000225726 NDUFA11Q86Y39 141 aa11.07□□□□□ -0.64
CCDC47-201ENST00000225726 KIR2DL5AQ8N109 375 aa11.07□□□□□ -0.64
CCDC47-201ENST00000225726 FAM19A2Q8N3H0 131 aa11.07□□□□□ -0.64
CCDC47-201ENST00000225726 TSPOP30536 169 aa11.07□□□□□ -0.64
CCDC47-201ENST00000225726 DEFB131AP59861 70 aa11.07□□□□□ -0.64
CCDC47-201ENST00000225726 NSUN5P1Q3KNT7 163 aa11.07□□□□□ -0.64
CCDC47-201ENST00000225726 C7orf71A4D174 169 aa11.07□□□□□ -0.64
CCDC47-201ENST00000225726 KRTAP10-3P60369 221 aa11.07□□□□□ -0.64
CCDC47-201ENST00000225726 ANXA2RQ3ZCQ2 193 aa11.07□□□□□ -0.64
CCDC47-201ENST00000225726 CACNG7P62955 275 aa11.06□□□□□ -0.64
CCDC47-201ENST00000225726 FAM104BQ5XKR9 115 aa11.06□□□□□ -0.64
CCDC47-201ENST00000225726 KCNS1Q96KK3 526 aa11.06□□□□□ -0.64
CCDC47-201ENST00000225726 RCHY1Q96PM5 261 aa11.06□□□□□ -0.64
CCDC47-201ENST00000225726 NF1P21359 2839 aa11.06□□□□□ -0.64
CCDC47-201ENST00000225726 A8MTW9 85 aa11.05□□□□□ -0.64
CCDC47-201ENST00000225726 MED14OSP0DP75 135 aa11.05□□□□□ -0.64
CCDC47-201ENST00000225726 ASIPP42127 132 aa11.05□□□□□ -0.64
CCDC47-201ENST00000225726 DNLZQ5SXM8 178 aa11.05□□□□□ -0.64
CCDC47-201ENST00000225726 TMEM191AQ9H0A3 160 aa11.05□□□□□ -0.64
CCDC47-201ENST00000225726 MAP6D1Q9H9H5 199 aa11.05□□□□□ -0.64
CCDC47-201ENST00000225726 IGKV3-20P01619 116 aa11.05□□□□□ -0.64
CCDC47-201ENST00000225726 HLA-DRB4P13762 266 aa11.05□□□□□ -0.64
CCDC47-201ENST00000225726 COX11Q9Y6N1 276 aa11.05□□□□□ -0.64
CCDC47-201ENST00000225726 HLA-DRB4X5D2U9 266 aa11.05□□□□□ -0.64
CCDC47-201ENST00000225726 AMTNQ6UX39 209 aa11.05□□□□□ -0.64
CCDC47-201ENST00000225726 ZNF256Q9Y2P7 627 aaPredicted RBP11.05□□□□□ -0.64
CCDC47-201ENST00000225726 IGHV4-4A0A075B6R2 117 aa11.04□□□□□ -0.64
CCDC47-201ENST00000225726 TMEM238LA0A1B0GVL6 79 aa11.04□□□□□ -0.64
CCDC47-201ENST00000225726 KNCNA6PVL3 124 aa11.04□□□□□ -0.64
CCDC47-201ENST00000225726 H3BVH4 76 aa11.04□□□□□ -0.64
CCDC47-201ENST00000225726 AMTP48728 403 aa11.04□□□□□ -0.64
CCDC47-201ENST00000225726 RPL24P83731 157 aaKnown RBP11.04□□□□□ -0.64
CCDC47-201ENST00000225726 MSRB1Q9NZV6 116 aa11.04□□□□□ -0.64
CCDC47-201ENST00000225726 ZNF324O75467 553 aaPredicted RBP11.04□□□□□ -0.64
CCDC47-201ENST00000225726 CFAP161Q6P656 301 aa11.04□□□□□ -0.64
CCDC47-201ENST00000225726 AMN1Q8IY45 258 aa11.04□□□□□ -0.64
CCDC47-201ENST00000225726 OR10AG1Q8NH19 301 aa11.04□□□□□ -0.64
CCDC47-201ENST00000225726 U3KQK5 164 aa11.04□□□□□ -0.64
CCDC47-201ENST00000225726 TRAV12-3A0A0B4J271 114 aa11.03□□□□□ -0.64
CCDC47-201ENST00000225726 H3BMM0 161 aa11.03□□□□□ -0.64
CCDC47-201ENST00000225726 K7ERU9 68 aa11.03□□□□□ -0.64
CCDC47-201ENST00000225726 M0R2Z0 102 aa11.03□□□□□ -0.64
CCDC47-201ENST00000225726 S100A4P26447 101 aaKnown RBP11.03□□□□□ -0.64
CCDC47-201ENST00000225726 FAM159AQ6UWV7 190 aa11.03□□□□□ -0.64
CCDC47-201ENST00000225726 SPINK13Q1W4C9 94 aa11.03□□□□□ -0.64
CCDC47-201ENST00000225726 MRPL51Q4U2R6 128 aaKnown RBP11.02□□□□□ -0.65
CCDC47-201ENST00000225726 SPANXN1Q5VSR9 72 aa11.02□□□□□ -0.65
CCDC47-201ENST00000225726 MCRIP2Q9BUT9 160 aaKnown RBP11.02□□□□□ -0.65
CCDC47-201ENST00000225726 HIVEP1P15822 2718 aa11.02□□□□□ -0.65
CCDC47-201ENST00000225726 SCRT2Q9NQ03 307 aa11.02□□□□□ -0.65
CCDC47-201ENST00000225726 NSD1Q96L73 2696 aaPredicted RBP11.02□□□□□ -0.65
CCDC47-201ENST00000225726 GNRH2O43555 120 aa11.01□□□□□ -0.65
CCDC47-201ENST00000225726 OR2K2Q8NGT1 345 aa11.01□□□□□ -0.65
CCDC47-201ENST00000225726 TRAV12-2A0A075B6T6 113 aa11.01□□□□□ -0.65
CCDC47-201ENST00000225726 NIT1Q86X76 327 aa11.01□□□□□ -0.65
CCDC47-201ENST00000225726 GAGE12BA1L429 117 aa11.01□□□□□ -0.65
CCDC47-201ENST00000225726 MPV17L2Q567V2 206 aa11.01□□□□□ -0.65
CCDC47-201ENST00000225726 RNF185Q96GF1 192 aa11.01□□□□□ -0.65
CCDC47-201ENST00000225726 FN1P02751 2386 aaKnown RBP11□□□□□ -0.65
CCDC47-201ENST00000225726 D6R8Y8 96 aa11□□□□□ -0.65
CCDC47-201ENST00000225726 RNASEKQ6P5S7 137 aaKnown RBP11□□□□□ -0.65
CCDC47-201ENST00000225726 ORMDL3Q8N138 153 aa11□□□□□ -0.65
CCDC47-201ENST00000225726 RNASE3P12724 160 aaKnown RBP11□□□□□ -0.65
CCDC47-201ENST00000225726 ORAOV1Q8WV07 137 aa11□□□□□ -0.65
CCDC47-201ENST00000225726 ODF3L2Q3SX64 289 aa11□□□□□ -0.65
CCDC47-201ENST00000225726 CHCHD1Q96BP2 118 aaKnown RBP11□□□□□ -0.65
CCDC47-201ENST00000225726 PRELID3AQ96N28 172 aa11□□□□□ -0.65
CCDC47-201ENST00000225726 IGLV1-51P01701 117 aa10.99□□□□□ -0.65
CCDC47-201ENST00000225726 URB1-AS1Q96HZ7 61 aa10.99□□□□□ -0.65
CCDC47-201ENST00000225726 PHLDA3Q9Y5J5 127 aa10.99□□□□□ -0.65
CCDC47-201ENST00000225726 RBMY1BA6NDE4 496 aaKnown RBP10.99□□□□□ -0.65
CCDC47-201ENST00000225726 RBMY1EA6NEQ0 496 aaKnown RBP10.99□□□□□ -0.65
CCDC47-201ENST00000225726 PF4P02776 101 aa10.99□□□□□ -0.65
CCDC47-201ENST00000225726 RBMY1DP0C7P1 496 aaKnown RBP10.99□□□□□ -0.65
CCDC47-201ENST00000225726 CMC4P56277 68 aaPredicted RBP10.99□□□□□ -0.65
CCDC47-201ENST00000225726 UQCR10Q9UDW1 63 aa10.99□□□□□ -0.65
CCDC47-201ENST00000225726 NUDT3O95989 172 aa10.99□□□□□ -0.65
CCDC47-201ENST00000225726 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.99□□□□□ -0.65
CCDC47-201ENST00000225726 IGHV1OR15-1A0A075B7D0 117 aa10.98□□□□□ -0.65
CCDC47-201ENST00000225726 TRAV26-1A0A087WT03 109 aa10.98□□□□□ -0.65
CCDC47-201ENST00000225726 HSBP1O75506 76 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms