RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	FABP4	P15090	132 aa		0.63	□□□□□ -2.31
CD44-238	ENST00000534296	G0S2	P27469	103 aa		0.63	□□□□□ -2.31
CD44-238	ENST00000534296	LTC4S	Q16873	150 aa		0.63	□□□□□ -2.31
CD44-238	ENST00000534296	SPINK9	Q5DT21	86 aa		0.63	□□□□□ -2.31
CD44-238	ENST00000534296	TMEM14EP	Q6UXP3	125 aa		0.63	□□□□□ -2.31
CD44-238	ENST00000534296	C3orf62	Q6ZUJ4	267 aa		0.63	□□□□□ -2.31
CD44-238	ENST00000534296	PHF5A	Q7RTV0	110 aa	Known RBP	0.63	□□□□□ -2.31
CD44-238	ENST00000534296	OR5H6	Q8NGV6	325 aa		0.63	□□□□□ -2.31
CD44-238	ENST00000534296	LAMA4	Q16363	1823 aa		0.63	□□□□□ -2.31
CD44-238	ENST00000534296	F8	P00451	2351 aa		0.63	□□□□□ -2.31
CD44-238	ENST00000534296	NIN	Q8N4C6	2090 aa		0.63	□□□□□ -2.31
CD44-238	ENST00000534296	WDFY3	Q8IZQ1	3526 aa		0.63	□□□□□ -2.31
CD44-238	ENST00000534296	MGAM	O43451	1857 aa		0.63	□□□□□ -2.31
CD44-238	ENST00000534296	USP54	Q70EL1	1684 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	SPTB	P11277	2137 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	NBPF19	A0A087WUL8	3843 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	CIT	O14578	2027 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	MYH1	P12882	1939 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	BCL9L	Q86UU0	1499 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	VIRMA	Q69YN4	1812 aa	Known RBP	0.62	□□□□□ -2.31
CD44-238	ENST00000534296	KIAA1549L	Q6ZVL6	1849 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	SVEP1	Q4LDE5	3571 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	C3orf85	A0A1B0GTC6	90 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296		A0A1B0GV72	72 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	ZNF727	A8MUV8	499 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	BCL2	P10415	239 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	SRP9	P49458	86 aa	Known RBP	0.62	□□□□□ -2.31
CD44-238	ENST00000534296	MIR22HG	Q0VDD5	57 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	NEDD8	Q15843	81 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	OCIAD2	Q56VL3	154 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	TMEM78	Q5T7P6	136 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	SPATA8	Q6RVD6	105 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296		Q6ZQY7	126 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	ANGPTL5	Q86XS5	388 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	ZC2HC1A	Q96GY0	325 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	SELENOS	Q9BQE4	189 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	LXN	Q9BS40	222 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	PCBD2	Q9H0N5	130 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	MYO15A	Q9UKN7	3530 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	ZZEF1	O43149	2961 aa		0.62	□□□□□ -2.31
CD44-238	ENST00000534296	NUPR2	A6NF83	97 aa		0.61	□□□□□ -2.31
CD44-238	ENST00000534296	ARL5C	A6NH57	179 aa		0.61	□□□□□ -2.31
CD44-238	ENST00000534296	FOXI2	Q6ZQN5	318 aa		0.61	□□□□□ -2.31
CD44-238	ENST00000534296		Q6ZS92	163 aa		0.61	□□□□□ -2.31
CD44-238	ENST00000534296		Q86TA4	180 aa		0.61	□□□□□ -2.31
CD44-238	ENST00000534296	PRELID3A	Q96N28	172 aa		0.61	□□□□□ -2.31
CD44-238	ENST00000534296	TECPR2	O15040	1411 aa		0.61	□□□□□ -2.31
CD44-238	ENST00000534296	KIF13A	Q9H1H9	1805 aa		0.61	□□□□□ -2.31
CD44-238	ENST00000534296	ZNF469	Q96JG9	3925 aa	Predicted RBP	0.61	□□□□□ -2.31
CD44-238	ENST00000534296	KNTC1	P50748	2209 aa		0.61	□□□□□ -2.31
CD44-238	ENST00000534296	CSMD2	Q7Z408	3487 aa		0.61	□□□□□ -2.31
CD44-238	ENST00000534296	ATM	Q13315	3056 aa		0.61	□□□□□ -2.31
CD44-238	ENST00000534296	CHD9	Q3L8U1	2897 aa		0.6	□□□□□ -2.31
CD44-238	ENST00000534296	RTL9	Q8NET4	1388 aa		0.6	□□□□□ -2.31
CD44-238	ENST00000534296	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	0.6	□□□□□ -2.31
CD44-238	ENST00000534296	LOC107986453	A0A1B0GWG9	222 aa		0.6	□□□□□ -2.31
CD44-238	ENST00000534296	TRDV1	A0A1B0GX56	115 aa		0.6	□□□□□ -2.31
CD44-238	ENST00000534296	PRORSD1P	A6NEY8	169 aa		0.6	□□□□□ -2.31
CD44-238	ENST00000534296	GABARAP	H6UMI1	98 aa		0.6	□□□□□ -2.31
CD44-238	ENST00000534296	IGHV3-33	P01772	117 aa		0.6	□□□□□ -2.31
CD44-238	ENST00000534296	S100A11	P31949	105 aa		0.6	□□□□□ -2.31
CD44-238	ENST00000534296	FXYD4	P59646	89 aa		0.6	□□□□□ -2.31
CD44-238	ENST00000534296	GLIPR1L1	Q6UWM5	242 aa		0.6	□□□□□ -2.31
CD44-238	ENST00000534296	LINC00305	Q7Z4B0	112 aa		0.6	□□□□□ -2.31
CD44-238	ENST00000534296	PRR15	Q8IV56	129 aa		0.6	□□□□□ -2.31
CD44-238	ENST00000534296	TAF9B	Q9HBM6	251 aa		0.6	□□□□□ -2.31
CD44-238	ENST00000534296	OTOR	Q9NRC9	128 aa		0.6	□□□□□ -2.31
CD44-238	ENST00000534296	ANK1	P16157	1881 aa		0.6	□□□□□ -2.31
CD44-238	ENST00000534296	CSPG4	Q6UVK1	2322 aa		0.6	□□□□□ -2.31
CD44-238	ENST00000534296	TRIO	O75962	3097 aa		0.6	□□□□□ -2.31
CD44-238	ENST00000534296	CDK12	Q9NYV4	1490 aa	Predicted RBP	0.6	□□□□□ -2.31
CD44-238	ENST00000534296	WDR97	A6NE52	1622 aa		0.6	□□□□□ -2.31
CD44-238	ENST00000534296	MGA	Q8IWI9	3026 aa		0.59	□□□□□ -2.31
CD44-238	ENST00000534296	APC2	O95996	2303 aa		0.59	□□□□□ -2.31
CD44-238	ENST00000534296	SYNJ1	O43426	1573 aa		0.59	□□□□□ -2.31
CD44-238	ENST00000534296	LOC107984156	A0A0G2JMH3	177 aa		0.59	□□□□□ -2.31
CD44-238	ENST00000534296		H7BYZ3	331 aa		0.59	□□□□□ -2.31
CD44-238	ENST00000534296	IFNA21	P01568	189 aa		0.59	□□□□□ -2.31
CD44-238	ENST00000534296	CD14	P08571	375 aa		0.59	□□□□□ -2.31
CD44-238	ENST00000534296	KRTAP2-3	P0C7H8	128 aa		0.59	□□□□□ -2.31
CD44-238	ENST00000534296	SAA1	P0DJI8	122 aa	Predicted RBP	0.59	□□□□□ -2.31
CD44-238	ENST00000534296	SPINT3	P49223	89 aa		0.59	□□□□□ -2.31
CD44-238	ENST00000534296	DNAJB13	P59910	316 aa		0.59	□□□□□ -2.31
CD44-238	ENST00000534296	MAX	P61244	160 aa		0.59	□□□□□ -2.31
CD44-238	ENST00000534296	B2M	P61769	119 aa		0.59	□□□□□ -2.31
CD44-238	ENST00000534296	SNRPD3	P62318	126 aa	Known RBP	0.59	□□□□□ -2.31
CD44-238	ENST00000534296	ARL17A	Q8IVW1	177 aa		0.59	□□□□□ -2.31
CD44-238	ENST00000534296	C10orf111	Q8N326	155 aa		0.59	□□□□□ -2.31
CD44-238	ENST00000534296	TMEM229B	Q8NBD8	167 aa		0.59	□□□□□ -2.31
CD44-238	ENST00000534296	CIB3	Q96Q77	187 aa	Predicted RBP	0.59	□□□□□ -2.31
CD44-238	ENST00000534296	KRTAP2-4	Q9BYR9	128 aa		0.59	□□□□□ -2.31
CD44-238	ENST00000534296	CENPH	Q9H3R5	247 aa		0.59	□□□□□ -2.31
CD44-238	ENST00000534296	JPT1	Q9UK76	154 aa		0.59	□□□□□ -2.31
CD44-238	ENST00000534296	FAT3	Q8TDW7	4589 aa		0.59	□□□□□ -2.32
CD44-238	ENST00000534296	TRPM7	Q96QT4	1865 aa		0.58	□□□□□ -2.32
CD44-238	ENST00000534296	TRAPPC8	Q9Y2L5	1435 aa		0.58	□□□□□ -2.32
CD44-238	ENST00000534296	TRAV13-1	A0A0B4J241	112 aa		0.58	□□□□□ -2.32
CD44-238	ENST00000534296		H3BMG7	143 aa		0.58	□□□□□ -2.32
CD44-238	ENST00000534296	FABP1	P07148	127 aa		0.58	□□□□□ -2.32
CD44-238	ENST00000534296	RPS3	P23396	243 aa	Known RBP eCLIP	0.58	□□□□□ -2.32

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