RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 IGKV2D-40P01614 121 aaPredicted RBP3.19□□□□□ -1.9
NUP54-206ENST00000508465 CXCL2P19875 107 aa3.19□□□□□ -1.9
NUP54-206ENST00000508465 DAD1P61803 113 aa3.19□□□□□ -1.9
NUP54-206ENST00000508465 CD300CQ08708 224 aa3.19□□□□□ -1.9
NUP54-206ENST00000508465 HYLS1Q96M11 299 aa3.19□□□□□ -1.9
NUP54-206ENST00000508465 SLC50A1Q9BRV3 221 aa3.19□□□□□ -1.9
NUP54-206ENST00000508465 NOP10Q9NPE3 64 aaKnown RBP3.19□□□□□ -1.9
NUP54-206ENST00000508465 RNF24Q9Y225 148 aa3.19□□□□□ -1.9
NUP54-206ENST00000508465 FUT9Q9Y231 359 aa3.19□□□□□ -1.9
NUP54-206ENST00000508465 EPPK1P58107 5090 aaKnown RBP3.19□□□□□ -1.9
NUP54-206ENST00000508465 FXYD6-FXYD2A0A087WZ82 144 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 PLAC8L1A1L4L8 177 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 TMEM189A5PLL7 270 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 PGPA6NDG6 321 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 C11orf94C9JXX5 98 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 C17orf112F2Z3M2 114 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 M0R2N4 97 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 GAGE7O76087 117 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 GAGE12FP0CL80 117 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 GAGE12GP0CL81 117 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 GAGE12IP0CL82 117 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 PET100P0DJ07 73 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 TSPOP30536 169 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 LEPP41159 167 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 CDKN1BP46527 198 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 TAS2R60P59551 318 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 RAB2AP61019 212 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 PNRC1Q12796 327 aaPredicted RBP3.18□□□□□ -1.9
NUP54-206ENST00000508465 GAGE1Q13065 139 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 GAGE4Q13068 117 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 BTN1A1Q13410 526 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 RGS21Q2M5E4 152 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 LGALS9CQ6DKI2 356 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 KRTAP7-1Q8IUC3 87 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 HSD17B11Q8NBQ5 300 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 OR10G4Q8NGN3 311 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 OR10G9Q8NGN4 311 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 OR10G7Q8NGN6 311 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 PHYHIPLQ96FC7 376 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 SH3BGRL3Q9H299 93 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 GSN-AS1Q9NRJ2 163 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 TP53TG3Q9ULZ0 132 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 RPH3ALQ9UNE2 315 aa3.18□□□□□ -1.9
NUP54-206ENST00000508465 FRAS1Q86XX4 4008 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 IGLV2-18A0A075B6J9 118 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 A0A1W2PPV4 95 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 F5H768 121 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 H7BYZ3 331 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 ZNF253O75346 499 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 ZNF324O75467 553 aaPredicted RBP3.17□□□□□ -1.9
NUP54-206ENST00000508465 GPX1P07203 203 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 GIPP09681 153 aaPredicted RBP3.17□□□□□ -1.9
NUP54-206ENST00000508465 M6PRP20645 277 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 ATP6V0CP27449 155 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 ZNF138P52744 262 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 UBE2L3P68036 154 aaKnown RBP3.17□□□□□ -1.9
NUP54-206ENST00000508465 ACOT6Q3I5F7 207 aaPredicted RBP3.17□□□□□ -1.9
NUP54-206ENST00000508465 MAJINQ3KP22 176 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 TMEM78Q5T7P6 136 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 PRR9Q5T870 116 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 RPL7L1Q6DKI1 246 aaKnown RBP3.17□□□□□ -1.9
NUP54-206ENST00000508465 Q75L30 129 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 TMEM256Q8N2U0 113 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 INO80EQ8NBZ0 244 aaPredicted RBP3.17□□□□□ -1.9
NUP54-206ENST00000508465 OR2T35Q8NGX2 323 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 Q8TAT8 98 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 SGK494Q96LW2 274 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 LINC00477Q96M19 166 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 AQP10Q96PS8 301 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 PYGO2Q9BRQ0 406 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 NDUFAF3Q9BU61 184 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 MRPL32Q9BYC8 188 aaKnown RBP3.17□□□□□ -1.9
NUP54-206ENST00000508465 Q9H3A6 140 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 KCNIP2Q9NS61 270 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 PRELID1Q9Y255 219 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 KLF12Q9Y4X4 402 aa3.17□□□□□ -1.9
NUP54-206ENST00000508465 TIMM8BQ9Y5J9 83 aaPredicted RBP3.17□□□□□ -1.9
NUP54-206ENST00000508465 TRAV8-1A0A0A6YYK1 113 aa3.16□□□□□ -1.9
NUP54-206ENST00000508465 A0A0J9YY99 117 aa3.16□□□□□ -1.9
NUP54-206ENST00000508465 C7orf71A4D174 169 aa3.16□□□□□ -1.9
NUP54-206ENST00000508465 RNF222A6NCQ9 220 aa3.16□□□□□ -1.9
NUP54-206ENST00000508465 LYRM9A8MSI8 78 aa3.16□□□□□ -1.9
NUP54-206ENST00000508465 G3V3Q6 166 aa3.16□□□□□ -1.9
NUP54-206ENST00000508465 SLC25A5P05141 298 aaKnown RBP3.16□□□□□ -1.9
NUP54-206ENST00000508465 ARL14EPLP0DKL9 152 aa3.16□□□□□ -1.9
NUP54-206ENST00000508465 CSN1S1P47710 185 aa3.16□□□□□ -1.9
NUP54-206ENST00000508465 GNG5P63218 68 aa3.16□□□□□ -1.9
NUP54-206ENST00000508465 ZNF415Q09FC8 603 aa3.16□□□□□ -1.9
NUP54-206ENST00000508465 OR5I1Q13606 314 aa3.16□□□□□ -1.9
NUP54-206ENST00000508465 PDE6HQ13956 83 aa3.16□□□□□ -1.9
NUP54-206ENST00000508465 OXA1LQ15070 435 aa3.16□□□□□ -1.9
NUP54-206ENST00000508465 KHDC3LQ587J8 217 aa3.16□□□□□ -1.9
NUP54-206ENST00000508465 MUC21Q5SSG8 566 aa3.16□□□□□ -1.9
NUP54-206ENST00000508465 Q6ZTI0 123 aa3.16□□□□□ -1.9
NUP54-206ENST00000508465 GOLT1AQ6ZVE7 132 aa3.16□□□□□ -1.9
NUP54-206ENST00000508465 SSX7Q7RTT5 188 aa3.16□□□□□ -1.9
NUP54-206ENST00000508465 IQCF2Q8IXL9 164 aa3.16□□□□□ -1.9
NUP54-206ENST00000508465 ZFAND2AQ8N6M9 145 aa3.16□□□□□ -1.9
NUP54-206ENST00000508465 OR2G3Q8NGZ4 309 aa3.16□□□□□ -1.9
NUP54-206ENST00000508465 MRPL53Q96EL3 112 aaKnown RBP3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms