RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 TNFRSF6BO95407 300 aa10.9□□□□□ -0.66
TCOF1-207ENST00000504761 LAGE3Q14657 143 aa10.9□□□□□ -0.66
TCOF1-207ENST00000504761 PCSK5Q92824 1860 aa10.9□□□□□ -0.66
TCOF1-207ENST00000504761 GNRH2O43555 120 aa10.9□□□□□ -0.66
TCOF1-207ENST00000504761 FSTL3O95633 263 aa10.9□□□□□ -0.66
TCOF1-207ENST00000504761 OR2K2Q8NGT1 345 aa10.9□□□□□ -0.66
TCOF1-207ENST00000504761 FAM231BA6NCW3 169 aa10.9□□□□□ -0.66
TCOF1-207ENST00000504761 TNFRSF13BO14836 293 aaPredicted RBP10.9□□□□□ -0.66
TCOF1-207ENST00000504761 TRAV9-2A0A087WT02 112 aa10.9□□□□□ -0.67
TCOF1-207ENST00000504761 WI2-2373I1.2A0A1W2PRP0 233 aa10.9□□□□□ -0.67
TCOF1-207ENST00000504761 APRG1Q8IVJ8 170 aa10.9□□□□□ -0.67
TCOF1-207ENST00000504761 BBC3Q96PG8 261 aaPredicted RBP10.9□□□□□ -0.67
TCOF1-207ENST00000504761 IGHV3-64A0A075B6Q5 118 aa10.89□□□□□ -0.67
TCOF1-207ENST00000504761 hDV102S1A0JD36 115 aa10.89□□□□□ -0.67
TCOF1-207ENST00000504761 FRMD6-AS1P0C7T7 363 aa10.89□□□□□ -0.67
TCOF1-207ENST00000504761 LOC107984156A0A0G2JMH3 177 aa10.89□□□□□ -0.67
TCOF1-207ENST00000504761 IGHV4-31P0DP07 118 aa10.89□□□□□ -0.67
TCOF1-207ENST00000504761 COTL1Q14019 142 aa10.89□□□□□ -0.67
TCOF1-207ENST00000504761 ERASQ7Z444 233 aa10.89□□□□□ -0.67
TCOF1-207ENST00000504761 ARL17AQ8IVW1 177 aa10.89□□□□□ -0.67
TCOF1-207ENST00000504761 CCDC140Q96MF4 163 aa10.89□□□□□ -0.67
TCOF1-207ENST00000504761 DSPP15924 2871 aaKnown RBP10.89□□□□□ -0.67
TCOF1-207ENST00000504761 CRYGBP07316 175 aa10.89□□□□□ -0.67
TCOF1-207ENST00000504761 RPL24P83731 157 aaKnown RBP10.89□□□□□ -0.67
TCOF1-207ENST00000504761 MRPL51Q4U2R6 128 aaKnown RBP10.89□□□□□ -0.67
TCOF1-207ENST00000504761 MEIG1Q5JSS6 88 aa10.89□□□□□ -0.67
TCOF1-207ENST00000504761 C10orf99Q6UWK7 81 aa10.89□□□□□ -0.67
TCOF1-207ENST00000504761 VPS25Q9BRG1 176 aa10.89□□□□□ -0.67
TCOF1-207ENST00000504761 CD300EQ496F6 205 aaPredicted RBP10.88□□□□□ -0.67
TCOF1-207ENST00000504761 PET117Q6UWS5 81 aa10.88□□□□□ -0.67
TCOF1-207ENST00000504761 TMEM101Q96IK0 257 aa10.88□□□□□ -0.67
TCOF1-207ENST00000504761 NEGR1Q7Z3B1 354 aa10.88□□□□□ -0.67
TCOF1-207ENST00000504761 WIPF2Q8TF74 440 aaPredicted RBP10.88□□□□□ -0.67
TCOF1-207ENST00000504761 ALKBH7Q9BT30 221 aaPredicted RBP10.88□□□□□ -0.67
TCOF1-207ENST00000504761 IGHV1OR15-1A0A075B7D0 117 aa10.88□□□□□ -0.67
TCOF1-207ENST00000504761 DEFB121Q5J5C9 76 aa10.88□□□□□ -0.67
TCOF1-207ENST00000504761 A0A1B0GV90 55 aa10.88□□□□□ -0.67
TCOF1-207ENST00000504761 CHCHD5Q9BSY4 110 aa10.88□□□□□ -0.67
TCOF1-207ENST00000504761 CD28P10747 220 aa10.87□□□□□ -0.67
TCOF1-207ENST00000504761 MSRB1Q9NZV6 116 aa10.87□□□□□ -0.67
TCOF1-207ENST00000504761 Q0VG73 95 aa10.87□□□□□ -0.67
TCOF1-207ENST00000504761 CMC4P56277 68 aaPredicted RBP10.87□□□□□ -0.67
TCOF1-207ENST00000504761 DPM2O94777 84 aa10.86□□□□□ -0.67
TCOF1-207ENST00000504761 C16orf54Q6UWD8 224 aa10.86□□□□□ -0.67
TCOF1-207ENST00000504761 MEGF9Q9H1U4 602 aa10.86□□□□□ -0.67
TCOF1-207ENST00000504761 SYS1-DBNDD2H3BUS1 97 aa10.86□□□□□ -0.67
TCOF1-207ENST00000504761 AVPP01185 164 aa10.86□□□□□ -0.67
TCOF1-207ENST00000504761 IGLC2P0DOY2 106 aa10.86□□□□□ -0.67
TCOF1-207ENST00000504761 TSSC4Q9Y5U2 329 aaPredicted RBP10.86□□□□□ -0.67
TCOF1-207ENST00000504761 TNRC6BQ9UPQ9 1833 aaKnown RBP10.85□□□□□ -0.67
TCOF1-207ENST00000504761 A0A0U1RRA0 63 aa10.85□□□□□ -0.67
TCOF1-207ENST00000504761 C2orf88Q9BSF0 95 aa10.85□□□□□ -0.67
TCOF1-207ENST00000504761 C1QTNF4Q9BXJ3 329 aa10.85□□□□□ -0.67
TCOF1-207ENST00000504761 VCYO14598 125 aa10.85□□□□□ -0.67
TCOF1-207ENST00000504761 NPYP01303 97 aa10.85□□□□□ -0.67
TCOF1-207ENST00000504761 IGF2BP2-AS1Q96M15 143 aa10.85□□□□□ -0.67
TCOF1-207ENST00000504761 CHTOPQ9Y3Y2 248 aaKnown RBP10.85□□□□□ -0.67
TCOF1-207ENST00000504761 Q6ZS46 218 aa10.85□□□□□ -0.67
TCOF1-207ENST00000504761 OR9G4Q8NGQ1 327 aa10.84□□□□□ -0.67
TCOF1-207ENST00000504761 NDUFAF3Q9BU61 184 aa10.84□□□□□ -0.67
TCOF1-207ENST00000504761 SPEGQ15772 3267 aa10.84□□□□□ -0.67
TCOF1-207ENST00000504761 GATA1P15976 413 aaPredicted RBP10.84□□□□□ -0.67
TCOF1-207ENST00000504761 IGKCP01834 107 aa10.84□□□□□ -0.67
TCOF1-207ENST00000504761 RPL36AP83881 106 aaKnown RBP10.84□□□□□ -0.67
TCOF1-207ENST00000504761 EBI3Q14213 229 aa10.84□□□□□ -0.67
TCOF1-207ENST00000504761 ZNF664Q8N3J9 261 aa10.84□□□□□ -0.67
TCOF1-207ENST00000504761 RPL36ALQ969Q0 106 aaKnown RBP10.84□□□□□ -0.67
TCOF1-207ENST00000504761 LAMTOR2Q9Y2Q5 125 aa10.84□□□□□ -0.67
TCOF1-207ENST00000504761 MRAP2Q96G30 205 aa10.84□□□□□ -0.67
TCOF1-207ENST00000504761 PTPRBP23467 1997 aa10.83□□□□□ -0.68
TCOF1-207ENST00000504761 GTF2H5Q6ZYL4 71 aa10.83□□□□□ -0.68
TCOF1-207ENST00000504761 ATP6V0BQ99437 205 aa10.83□□□□□ -0.68
TCOF1-207ENST00000504761 MAP1AP78559 2803 aaPredicted RBP10.83□□□□□ -0.68
TCOF1-207ENST00000504761 DNAJC9-AS1A6NH13 148 aa10.83□□□□□ -0.68
TCOF1-207ENST00000504761 C2orf70A6NJV1 201 aa10.83□□□□□ -0.68
TCOF1-207ENST00000504761 CITED2Q99967 270 aaPredicted RBP10.83□□□□□ -0.68
TCOF1-207ENST00000504761 SFTA2Q6UW10 78 aa10.83□□□□□ -0.68
TCOF1-207ENST00000504761 TMEM238LA0A1B0GVL6 79 aa10.82□□□□□ -0.68
TCOF1-207ENST00000504761 GAGE12BA1L429 117 aa10.82□□□□□ -0.68
TCOF1-207ENST00000504761 A6NJY4 79 aa10.82□□□□□ -0.68
TCOF1-207ENST00000504761 GAGE7O76087 117 aa10.82□□□□□ -0.68
TCOF1-207ENST00000504761 GAGE12FP0CL80 117 aa10.82□□□□□ -0.68
TCOF1-207ENST00000504761 GAGE12GP0CL81 117 aa10.82□□□□□ -0.68
TCOF1-207ENST00000504761 GAGE12IP0CL82 117 aa10.82□□□□□ -0.68
TCOF1-207ENST00000504761 SRSF2Q01130 221 aaKnown RBP10.82□□□□□ -0.68
TCOF1-207ENST00000504761 Q6ZWC4 215 aa10.82□□□□□ -0.68
TCOF1-207ENST00000504761 STPG4Q8N801 248 aa10.82□□□□□ -0.68
TCOF1-207ENST00000504761 APOMO95445 188 aa10.82□□□□□ -0.68
TCOF1-207ENST00000504761 GTSF1Q8WW33 167 aa10.82□□□□□ -0.68
TCOF1-207ENST00000504761 C1orf159Q96HA4 380 aa10.82□□□□□ -0.68
TCOF1-207ENST00000504761 GAGE10A6NGK3 116 aa10.82□□□□□ -0.68
TCOF1-207ENST00000504761 SIGLEC8Q9NYZ4 499 aa10.82□□□□□ -0.68
TCOF1-207ENST00000504761 IGHV3-38A0A0C4DH36 116 aa10.82□□□□□ -0.68
TCOF1-207ENST00000504761 ZC2HC1BQ5TFG8 222 aa10.82□□□□□ -0.68
TCOF1-207ENST00000504761 PYGO2Q9BRQ0 406 aa10.82□□□□□ -0.68
TCOF1-207ENST00000504761 CIRBPQ14011 172 aaKnown RBP10.81□□□□□ -0.68
TCOF1-207ENST00000504761 SDHAF1A6NFY7 115 aa10.81□□□□□ -0.68
TCOF1-207ENST00000504761 J3QR89 54 aa10.81□□□□□ -0.68
TCOF1-207ENST00000504761 NUPR1O60356 82 aa10.81□□□□□ -0.68
TCOF1-207ENST00000504761 LINC00322Q6ZN03 302 aaPredicted RBP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms