RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 UBE2L3P68036 154 aaKnown RBP9.27□□□□□ -0.93
SQSTM1-208ENST00000485412 C10orf126Q8N4M7 172 aa9.27□□□□□ -0.93
SQSTM1-208ENST00000485412 TVP23CQ96ET8 276 aa9.27□□□□□ -0.93
SQSTM1-208ENST00000485412 TRAV4A0A0B4J268 109 aa9.26□□□□□ -0.93
SQSTM1-208ENST00000485412 RBAKDNA6NC62 111 aa9.26□□□□□ -0.93
SQSTM1-208ENST00000485412 KRTAP29-1A8MX34 341 aaPredicted RBP9.26□□□□□ -0.93
SQSTM1-208ENST00000485412 F6UZH7 168 aa9.26□□□□□ -0.93
SQSTM1-208ENST00000485412 AKAP14Q86UN6 197 aa9.26□□□□□ -0.93
SQSTM1-208ENST00000485412 HYLS1Q96M11 299 aa9.26□□□□□ -0.93
SQSTM1-208ENST00000485412 FAM30AQ9NZY2 134 aa9.26□□□□□ -0.93
SQSTM1-208ENST00000485412 RPH3ALQ9UNE2 315 aa9.26□□□□□ -0.93
SQSTM1-208ENST00000485412 TRAV8-1A0A0A6YYK1 113 aa9.25□□□□□ -0.93
SQSTM1-208ENST00000485412 CSN1S1P47710 185 aa9.25□□□□□ -0.93
SQSTM1-208ENST00000485412 FAM159AQ6UWV7 190 aa9.25□□□□□ -0.93
SQSTM1-208ENST00000485412 SYT8Q8NBV8 401 aa9.25□□□□□ -0.93
SQSTM1-208ENST00000485412 SPXQ9BT56 116 aa9.25□□□□□ -0.93
SQSTM1-208ENST00000485412 FAT3Q8TDW7 4589 aa9.25□□□□□ -0.93
SQSTM1-208ENST00000485412 TRGV11A0A075B6L2 103 aa9.24□□□□□ -0.93
SQSTM1-208ENST00000485412 C9JCJ5 164 aa9.24□□□□□ -0.93
SQSTM1-208ENST00000485412 ORM1P02763 201 aa9.24□□□□□ -0.93
SQSTM1-208ENST00000485412 TYMSP04818 313 aa9.24□□□□□ -0.93
SQSTM1-208ENST00000485412 GATA1P15976 413 aaPredicted RBP9.24□□□□□ -0.93
SQSTM1-208ENST00000485412 WFDC2Q14508 124 aa9.24□□□□□ -0.93
SQSTM1-208ENST00000485412 TDRG1Q3Y452 100 aa9.24□□□□□ -0.93
SQSTM1-208ENST00000485412 FFAR4Q5NUL3 377 aa9.24□□□□□ -0.93
SQSTM1-208ENST00000485412 SERTAD4-AS1Q5TG53 156 aa9.24□□□□□ -0.93
SQSTM1-208ENST00000485412 Q8N3U1 123 aa9.24□□□□□ -0.93
SQSTM1-208ENST00000485412 NHLRC2Q8NBF2 726 aa9.24□□□□□ -0.93
SQSTM1-208ENST00000485412 OR4C5Q8NGB2 326 aa9.24□□□□□ -0.93
SQSTM1-208ENST00000485412 TXNDC17Q9BRA2 123 aa9.24□□□□□ -0.93
SQSTM1-208ENST00000485412 Q9HAA7 133 aa9.24□□□□□ -0.93
SQSTM1-208ENST00000485412 IGHV3-38A0A0C4DH36 116 aa9.23□□□□□ -0.93
SQSTM1-208ENST00000485412 M0R2P5 195 aa9.23□□□□□ -0.93
SQSTM1-208ENST00000485412 H2BFSP57053 126 aa9.23□□□□□ -0.93
SQSTM1-208ENST00000485412 GNG5P63218 68 aa9.23□□□□□ -0.93
SQSTM1-208ENST00000485412 DPPA3Q6W0C5 159 aa9.23□□□□□ -0.93
SQSTM1-208ENST00000485412 Q8N814 137 aa9.23□□□□□ -0.93
SQSTM1-208ENST00000485412 DEFB104AQ8WTQ1 72 aa9.23□□□□□ -0.93
SQSTM1-208ENST00000485412 SMIM3Q9BZL3 60 aa9.23□□□□□ -0.93
SQSTM1-208ENST00000485412 MED28Q9H204 178 aa9.23□□□□□ -0.93
SQSTM1-208ENST00000485412 C11orf21Q9P2W6 132 aa9.23□□□□□ -0.93
SQSTM1-208ENST00000485412 GOLT1AQ6ZVE7 132 aa9.22□□□□□ -0.93
SQSTM1-208ENST00000485412 LINC00528Q8N1L1 170 aa9.22□□□□□ -0.93
SQSTM1-208ENST00000485412 SGK494Q96LW2 274 aa9.22□□□□□ -0.93
SQSTM1-208ENST00000485412 ATP5SQ99766 215 aa9.22□□□□□ -0.93
SQSTM1-208ENST00000485412 NMES1Q9C002 83 aa9.22□□□□□ -0.93
SQSTM1-208ENST00000485412 KCNIP2Q9NS61 270 aa9.22□□□□□ -0.93
SQSTM1-208ENST00000485412 LENEPQ9Y5L5 61 aa9.22□□□□□ -0.93
SQSTM1-208ENST00000485412 PKHD1L1Q86WI1 4243 aa9.21□□□□□ -0.93
SQSTM1-208ENST00000485412 IGHV3-73A0A0B4J1V6 119 aa9.21□□□□□ -0.94
SQSTM1-208ENST00000485412 PGPA6NDG6 321 aa9.21□□□□□ -0.94
SQSTM1-208ENST00000485412 IBA57-AS1B1ANH7 110 aa9.21□□□□□ -0.94
SQSTM1-208ENST00000485412 HMGB3O15347 200 aaKnown RBP9.21□□□□□ -0.94
SQSTM1-208ENST00000485412 IGHV3-30P01768 117 aa9.21□□□□□ -0.94
SQSTM1-208ENST00000485412 IGHV3-33P01772 117 aa9.21□□□□□ -0.94
SQSTM1-208ENST00000485412 C1QBP02746 253 aa9.21□□□□□ -0.94
SQSTM1-208ENST00000485412 IGHV3-30-3P0DP02 117 aa9.21□□□□□ -0.94
SQSTM1-208ENST00000485412 IGHV3-30-5P0DP03 117 aa9.21□□□□□ -0.94
SQSTM1-208ENST00000485412 PPT1P50897 306 aa9.21□□□□□ -0.94
SQSTM1-208ENST00000485412 KHDC3LQ587J8 217 aa9.21□□□□□ -0.94
SQSTM1-208ENST00000485412 LINC01556Q5JQF7 62 aa9.21□□□□□ -0.94
SQSTM1-208ENST00000485412 SLC25A29Q8N8R3 303 aa9.21□□□□□ -0.94
SQSTM1-208ENST00000485412 WFDC1Q9HC57 220 aa9.21□□□□□ -0.94
SQSTM1-208ENST00000485412 OTORQ9NRC9 128 aa9.21□□□□□ -0.94
SQSTM1-208ENST00000485412 HMCN2Q8NDA2 5059 aa9.21□□□□□ -0.94
SQSTM1-208ENST00000485412 C17orf112F2Z3M2 114 aa9.2□□□□□ -0.94
SQSTM1-208ENST00000485412 ZNF80P51504 273 aaPredicted RBP9.2□□□□□ -0.94
SQSTM1-208ENST00000485412 TCTE3Q8IZS6 198 aa9.2□□□□□ -0.94
SQSTM1-208ENST00000485412 TMEM75Q8N9X5 138 aa9.2□□□□□ -0.94
SQSTM1-208ENST00000485412 PPP1R1CQ8WVI7 109 aa9.2□□□□□ -0.94
SQSTM1-208ENST00000485412 TMED6Q8WW62 240 aa9.2□□□□□ -0.94
SQSTM1-208ENST00000485412 MBD2Q9UBB5 411 aa9.2□□□□□ -0.94
SQSTM1-208ENST00000485412 HSPB11Q9Y547 144 aa9.2□□□□□ -0.94
SQSTM1-208ENST00000485412 TRAV21A0A0B4J279 112 aa9.19□□□□□ -0.94
SQSTM1-208ENST00000485412 SSNA1O43805 119 aa9.19□□□□□ -0.94
SQSTM1-208ENST00000485412 NKX2-5P52952 324 aaPredicted RBP9.19□□□□□ -0.94
SQSTM1-208ENST00000485412 TIRAPP58753 221 aa9.19□□□□□ -0.94
SQSTM1-208ENST00000485412 RAB2AP61019 212 aa9.19□□□□□ -0.94
SQSTM1-208ENST00000485412 IFITM2Q01629 132 aa9.19□□□□□ -0.94
SQSTM1-208ENST00000485412 ASB13Q8WXK3 278 aa9.19□□□□□ -0.94
SQSTM1-208ENST00000485412 TREM1Q9NP99 234 aa9.19□□□□□ -0.94
SQSTM1-208ENST00000485412 UBR4Q5T4S7 5183 aa9.19□□□□□ -0.94
SQSTM1-208ENST00000485412 FBLL1A6NHQ2 334 aaKnown RBP9.18□□□□□ -0.94
SQSTM1-208ENST00000485412 OR10J3Q5JRS4 329 aa9.18□□□□□ -0.94
SQSTM1-208ENST00000485412 CFAP126Q5VTH2 177 aa9.18□□□□□ -0.94
SQSTM1-208ENST00000485412 SH2D6Q7Z4S9 175 aa9.18□□□□□ -0.94
SQSTM1-208ENST00000485412 CMTM2Q8TAZ6 248 aa9.18□□□□□ -0.94
SQSTM1-208ENST00000485412 SDF2L1Q9HCN8 221 aa9.18□□□□□ -0.94
SQSTM1-208ENST00000485412 Q9UF83 564 aa9.18□□□□□ -0.94
SQSTM1-208ENST00000485412 TRAV8-6A0A0B4J262 113 aa9.17□□□□□ -0.94
SQSTM1-208ENST00000485412 LECT2O14960 151 aa9.17□□□□□ -0.94
SQSTM1-208ENST00000485412 RS1O15537 224 aa9.17□□□□□ -0.94
SQSTM1-208ENST00000485412 MPC2O95563 127 aa9.17□□□□□ -0.94
SQSTM1-208ENST00000485412 TAS2R45P59539 299 aa9.17□□□□□ -0.94
SQSTM1-208ENST00000485412 ZNF876PQ49A33 203 aa9.17□□□□□ -0.94
SQSTM1-208ENST00000485412 LINC01620Q4KN68 170 aa9.17□□□□□ -0.94
SQSTM1-208ENST00000485412 PGPEP1LA6NFU8 196 aa9.16□□□□□ -0.94
SQSTM1-208ENST00000485412 RPL12P30050 165 aaKnown RBP9.16□□□□□ -0.94
SQSTM1-208ENST00000485412 C9orf85Q96MD7 179 aa9.16□□□□□ -0.94
SQSTM1-208ENST00000485412 PLA2G2DQ9UNK4 145 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 376.5 ms