RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 HERVK_113P63121 156 aa13.56□□□□□ -0.24
SHANK1-201ENST00000293441 FAM231DQ6ZW35 169 aa13.56□□□□□ -0.24
SHANK1-201ENST00000293441 ZNF664Q8N3J9 261 aa13.56□□□□□ -0.24
SHANK1-201ENST00000293441 POU2AF1Q16633 256 aa13.55□□□□□ -0.24
SHANK1-201ENST00000293441 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.55□□□□□ -0.24
SHANK1-201ENST00000293441 IGKV2-29A2NJV5 120 aaPredicted RBP13.55□□□□□ -0.24
SHANK1-201ENST00000293441 UBE2BP63146 152 aa13.55□□□□□ -0.24
SHANK1-201ENST00000293441 TAL2Q16559 108 aa13.55□□□□□ -0.24
SHANK1-201ENST00000293441 PYGO2Q9BRQ0 406 aa13.55□□□□□ -0.24
SHANK1-201ENST00000293441 IGHV7-81A0A0B4J1V7 117 aa13.55□□□□□ -0.24
SHANK1-201ENST00000293441 AJUBAQ96IF1 538 aa13.55□□□□□ -0.24
SHANK1-201ENST00000293441 NBASA2RRP1 2371 aa13.54□□□□□ -0.24
SHANK1-201ENST00000293441 SRSF2Q01130 221 aaKnown RBP13.54□□□□□ -0.24
SHANK1-201ENST00000293441 FGF23Q9GZV9 251 aaPredicted RBP13.54□□□□□ -0.24
SHANK1-201ENST00000293441 SOCS3O14543 225 aa13.54□□□□□ -0.24
SHANK1-201ENST00000293441 NPBQ8NG41 125 aa13.54□□□□□ -0.24
SHANK1-201ENST00000293441 AGPAT4-IT1Q9H0P7 198 aa13.54□□□□□ -0.24
SHANK1-201ENST00000293441 LTAP01374 205 aa13.53□□□□□ -0.24
SHANK1-201ENST00000293441 EML6Q6ZMW3 1958 aa13.53□□□□□ -0.24
SHANK1-201ENST00000293441 MRPL35Q9NZE8 188 aaKnown RBP13.53□□□□□ -0.24
SHANK1-201ENST00000293441 ADAMTSL5Q6ZMM2 481 aa13.53□□□□□ -0.24
SHANK1-201ENST00000293441 H3BMM0 161 aa13.53□□□□□ -0.24
SHANK1-201ENST00000293441 EGR2P11161 476 aaPredicted RBP13.53□□□□□ -0.24
SHANK1-201ENST00000293441 MORN5Q5VZ52 161 aa13.53□□□□□ -0.24
SHANK1-201ENST00000293441 UBE2WQ96B02 151 aa13.53□□□□□ -0.24
SHANK1-201ENST00000293441 POLR3KQ9Y2Y1 108 aaPredicted RBP13.52□□□□□ -0.24
SHANK1-201ENST00000293441 CD5LO43866 347 aa13.52□□□□□ -0.25
SHANK1-201ENST00000293441 IGHV4OR15-8A0A075B7B6 117 aa13.52□□□□□ -0.25
SHANK1-201ENST00000293441 A0A087WW49 117 aa13.52□□□□□ -0.25
SHANK1-201ENST00000293441 PRR20EP86478 221 aa13.52□□□□□ -0.25
SHANK1-201ENST00000293441 PRR20CP86479 221 aa13.52□□□□□ -0.25
SHANK1-201ENST00000293441 PRR20DP86480 221 aa13.52□□□□□ -0.25
SHANK1-201ENST00000293441 PRR20BP86481 221 aa13.52□□□□□ -0.25
SHANK1-201ENST00000293441 PRR20AP86496 221 aa13.52□□□□□ -0.25
SHANK1-201ENST00000293441 WIPF3A6NGB9 483 aa13.51□□□□□ -0.25
SHANK1-201ENST00000293441 C2orf16Q68DN1 1984 aa13.51□□□□□ -0.25
SHANK1-201ENST00000293441 CRLF1O75462 422 aa13.51□□□□□ -0.25
SHANK1-201ENST00000293441 RPL18AQ02543 176 aaKnown RBP13.51□□□□□ -0.25
SHANK1-201ENST00000293441 C20orf78Q9BR46 151 aa13.51□□□□□ -0.25
SHANK1-201ENST00000293441 C5orf56Q8N8D9 126 aa13.5□□□□□ -0.25
SHANK1-201ENST00000293441 PLXNB3Q9ULL4 1909 aa13.5□□□□□ -0.25
SHANK1-201ENST00000293441 A0A1W2PNU3 283 aaPredicted RBP13.5□□□□□ -0.25
SHANK1-201ENST00000293441 PCNX2A6NKB5 2137 aa13.5□□□□□ -0.25
SHANK1-201ENST00000293441 GYPEP15421 78 aa13.5□□□□□ -0.25
SHANK1-201ENST00000293441 C16orf74Q96GX8 76 aa13.5□□□□□ -0.25
SHANK1-201ENST00000293441 ESM1Q9NQ30 184 aa13.5□□□□□ -0.25
SHANK1-201ENST00000293441 RBAKDNA6NC62 111 aa13.49□□□□□ -0.25
SHANK1-201ENST00000293441 C1orf43Q9BWL3 253 aa13.49□□□□□ -0.25
SHANK1-201ENST00000293441 K7EN84 100 aa13.49□□□□□ -0.25
SHANK1-201ENST00000293441 FGF6P10767 208 aa13.49□□□□□ -0.25
SHANK1-201ENST00000293441 IGHV3-30P01768 117 aa13.49□□□□□ -0.25
SHANK1-201ENST00000293441 IGHV3-33P01772 117 aa13.49□□□□□ -0.25
SHANK1-201ENST00000293441 IGHV3-30-3P0DP02 117 aa13.49□□□□□ -0.25
SHANK1-201ENST00000293441 IGHV3-30-5P0DP03 117 aa13.49□□□□□ -0.25
SHANK1-201ENST00000293441 DEFB105AQ8NG35 78 aa13.49□□□□□ -0.25
SHANK1-201ENST00000293441 WIPF2Q8TF74 440 aaPredicted RBP13.49□□□□□ -0.25
SHANK1-201ENST00000293441 SPART-AS1P0CW21 52 aa13.49□□□□□ -0.25
SHANK1-201ENST00000293441 ICOSQ9Y6W8 199 aa13.49□□□□□ -0.25
SHANK1-201ENST00000293441 F8VRH5 84 aa13.48□□□□□ -0.25
SHANK1-201ENST00000293441 LGALS9BQ3B8N2 356 aa13.48□□□□□ -0.25
SHANK1-201ENST00000293441 LGALS9CQ6DKI2 356 aa13.48□□□□□ -0.25
SHANK1-201ENST00000293441 DSCR8Q96T75 97 aa13.48□□□□□ -0.25
SHANK1-201ENST00000293441 I3L2K1 104 aa13.48□□□□□ -0.25
SHANK1-201ENST00000293441 DLEU1O43261 78 aa13.48□□□□□ -0.25
SHANK1-201ENST00000293441 Q8N9W7 124 aa13.48□□□□□ -0.25
SHANK1-201ENST00000293441 ZFP36P26651 326 aaKnown RBP13.48□□□□□ -0.25
SHANK1-201ENST00000293441 BUB3O43684 328 aa13.47□□□□□ -0.25
SHANK1-201ENST00000293441 CCL18P55774 89 aa13.47□□□□□ -0.25
SHANK1-201ENST00000293441 TRAV13-2A0A0B4J235 113 aa13.47□□□□□ -0.25
SHANK1-201ENST00000293441 J3QQQ9 107 aa13.47□□□□□ -0.25
SHANK1-201ENST00000293441 SEM1Q6ZVN7 128 aa13.47□□□□□ -0.25
SHANK1-201ENST00000293441 SPTAN1Q13813 2472 aaKnown RBP13.47□□□□□ -0.25
SHANK1-201ENST00000293441 DAZAP2Q15038 168 aaPredicted RBP13.47□□□□□ -0.25
SHANK1-201ENST00000293441 GTSF1LQ9H1H1 148 aa13.47□□□□□ -0.25
SHANK1-201ENST00000293441 DYSFO75923 2080 aa13.47□□□□□ -0.25
SHANK1-201ENST00000293441 UBE2V1Q13404 147 aa13.47□□□□□ -0.25
SHANK1-201ENST00000293441 KRTAP27-1Q3LI81 207 aa13.46□□□□□ -0.25
SHANK1-201ENST00000293441 IGLV11-55A0A075B6I3 123 aa13.46□□□□□ -0.25
SHANK1-201ENST00000293441 IGLV10-54A0A075B6I4 117 aa13.46□□□□□ -0.25
SHANK1-201ENST00000293441 F8W735 103 aaPredicted RBP13.46□□□□□ -0.25
SHANK1-201ENST00000293441 C5orf38Q86SI9 138 aa13.46□□□□□ -0.25
SHANK1-201ENST00000293441 Q8NFD4 153 aa13.46□□□□□ -0.25
SHANK1-201ENST00000293441 C11orf52Q96A22 123 aa13.46□□□□□ -0.25
SHANK1-201ENST00000293441 K7EIM0 57 aa13.46□□□□□ -0.25
SHANK1-201ENST00000293441 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.46□□□□□ -0.26
SHANK1-201ENST00000293441 K7EQD1 137 aa13.45□□□□□ -0.26
SHANK1-201ENST00000293441 Q6ZWC4 215 aa13.45□□□□□ -0.26
SHANK1-201ENST00000293441 HAMPP81172 84 aa13.45□□□□□ -0.26
SHANK1-201ENST00000293441 MALRD1Q5VYJ5 2156 aa13.45□□□□□ -0.26
SHANK1-201ENST00000293441 DKK2Q9UBU2 259 aa13.45□□□□□ -0.26
SHANK1-201ENST00000293441 CRYGCP07315 174 aa13.45□□□□□ -0.26
SHANK1-201ENST00000293441 MRPL23Q16540 153 aaKnown RBP13.45□□□□□ -0.26
SHANK1-201ENST00000293441 TEX48A0A1B0GUV7 120 aa13.44□□□□□ -0.26
SHANK1-201ENST00000293441 ATP5G1P05496 136 aa13.44□□□□□ -0.26
SHANK1-201ENST00000293441 COX11Q9Y6N1 276 aa13.44□□□□□ -0.26
SHANK1-201ENST00000293441 C16orf54Q6UWD8 224 aa13.44□□□□□ -0.26
SHANK1-201ENST00000293441 ZNF493Q6ZR52 646 aa13.44□□□□□ -0.26
SHANK1-201ENST00000293441 INAFM2P0DMQ5 153 aa13.44□□□□□ -0.26
SHANK1-201ENST00000293441 CEND1Q8N111 149 aa13.44□□□□□ -0.26
SHANK1-201ENST00000293441 ATP6V0E2Q8NHE4 81 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms