RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 CSNK1G2-AS1Q8NCQ2 148 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 OR51G1Q8NGK1 321 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 C11orf45Q8TAV5 145 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 DCANP1Q8TF63 244 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 IL22RA2Q969J5 263 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 BORCS7Q96B45 105 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 ATP5SQ99766 215 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 RTBDNQ9BSG5 229 aaPredicted RBP4.87□□□□□ -1.63
VPS53-213ENST00000572334 SMIM3Q9BZL3 60 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 NAA60Q9H7X0 242 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 WFDC1Q9HC57 220 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 SPANXA1Q9NS26 97 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 FUT9Q9Y231 359 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 U3KQE9 123 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 X6R8D5 127 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 IGHV4-28A0A0C4DH34 117 aa4.86□□□□□ -1.63
VPS53-213ENST00000572334 C17orf112F2Z3M2 114 aa4.86□□□□□ -1.63
VPS53-213ENST00000572334 ATP6V0CP27449 155 aa4.86□□□□□ -1.63
VPS53-213ENST00000572334 PIGPP57054 158 aa4.86□□□□□ -1.63
VPS53-213ENST00000572334 SUPT4H1P63272 117 aaKnown RBP4.86□□□□□ -1.63
VPS53-213ENST00000572334 ERHP84090 104 aaKnown RBP4.86□□□□□ -1.63
VPS53-213ENST00000572334 TMEM187Q14656 261 aa4.86□□□□□ -1.63
VPS53-213ENST00000572334 VAMP3Q15836 100 aa4.86□□□□□ -1.63
VPS53-213ENST00000572334 MAJINQ3KP22 176 aa4.86□□□□□ -1.63
VPS53-213ENST00000572334 SP6Q3SY56 376 aa4.86□□□□□ -1.63
VPS53-213ENST00000572334 OCIAD2Q56VL3 154 aa4.86□□□□□ -1.63
VPS53-213ENST00000572334 MRPL54Q6P161 138 aaKnown RBP4.86□□□□□ -1.63
VPS53-213ENST00000572334 CFAP161Q6P656 301 aa4.86□□□□□ -1.63
VPS53-213ENST00000572334 Q6ZN92 141 aa4.86□□□□□ -1.63
VPS53-213ENST00000572334 NIT1Q86X76 327 aa4.86□□□□□ -1.63
VPS53-213ENST00000572334 TMEM230Q96A57 120 aa4.86□□□□□ -1.63
VPS53-213ENST00000572334 AP1S3Q96PC3 154 aa4.86□□□□□ -1.63
VPS53-213ENST00000572334 RAB40CQ96S21 281 aa4.86□□□□□ -1.63
VPS53-213ENST00000572334 PMCHL2Q9BQD1 86 aa4.86□□□□□ -1.63
VPS53-213ENST00000572334 GNG13Q9P2W3 67 aa4.86□□□□□ -1.63
VPS53-213ENST00000572334 TIMM9Q9Y5J7 89 aa4.86□□□□□ -1.63
VPS53-213ENST00000572334 PCLOQ9Y6V0 5065 aa4.85□□□□□ -1.63
VPS53-213ENST00000572334 C3orf85A0A1B0GTC6 90 aa4.85□□□□□ -1.63
VPS53-213ENST00000572334 KNCNA6PVL3 124 aa4.85□□□□□ -1.63
VPS53-213ENST00000572334 NXPH3O95157 252 aa4.85□□□□□ -1.63
VPS53-213ENST00000572334 IGLC1P0CG04 106 aa4.85□□□□□ -1.63
VPS53-213ENST00000572334 SMIM17P0DL12 118 aa4.85□□□□□ -1.63
VPS53-213ENST00000572334 CRISP2P16562 243 aa4.85□□□□□ -1.63
VPS53-213ENST00000572334 YPEL3P61236 119 aaPredicted RBP4.85□□□□□ -1.63
VPS53-213ENST00000572334 MEF2BQ02080 365 aaPredicted RBP4.85□□□□□ -1.63
VPS53-213ENST00000572334 Q0VG73 95 aa4.85□□□□□ -1.63
VPS53-213ENST00000572334 TIGITQ495A1 244 aa4.85□□□□□ -1.63
VPS53-213ENST00000572334 OR10J3Q5JRS4 329 aa4.85□□□□□ -1.63
VPS53-213ENST00000572334 Q6ZTC4 211 aa4.85□□□□□ -1.63
VPS53-213ENST00000572334 BAGE3Q86Y29 109 aa4.85□□□□□ -1.63
VPS53-213ENST00000572334 BAGE2Q86Y30 109 aa4.85□□□□□ -1.63
VPS53-213ENST00000572334 GLMPQ8WWB7 406 aa4.85□□□□□ -1.63
VPS53-213ENST00000572334 TMEM37Q8WXS4 190 aa4.85□□□□□ -1.63
VPS53-213ENST00000572334 GRAMD2BQ96HH9 432 aa4.85□□□□□ -1.63
VPS53-213ENST00000572334 SLC39A9Q9NUM3 307 aa4.85□□□□□ -1.63
VPS53-213ENST00000572334 CELA1Q9UNI1 258 aa4.85□□□□□ -1.63
VPS53-213ENST00000572334 RCL1Q9Y2P8 373 aaKnown RBP4.85□□□□□ -1.63
VPS53-213ENST00000572334 PXMP4Q9Y6I8 212 aa4.85□□□□□ -1.63
VPS53-213ENST00000572334 A0A1B0GVY2 172 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 ZFP92A6NM28 416 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 CEBPZOSA8MTT3 80 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 IGLL5B9A064 214 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 DIRC3C9JPN6 131 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 ZNF253O75346 499 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 NBEAP1P0C6P0 100 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 ZNF688P0C7X2 276 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 LORP23490 312 aaPredicted RBP4.84□□□□□ -1.63
VPS53-213ENST00000572334 NPPCP23582 126 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 HLA-DMBP28068 263 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 TCTAP57738 103 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 SPATA45Q537H7 98 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 PSMG4Q5JS54 123 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 CST9LP1Q5W188 147 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 C16orf54Q6UWD8 224 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 STHQ8IWL8 128 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 STXBP6Q8NFX7 210 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 OR5C1Q8NGR4 320 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 RNASE8Q8TDE3 154 aaKnown RBP4.84□□□□□ -1.63
VPS53-213ENST00000572334 CST9LQ9H4G1 147 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 CLEC5AQ9NY25 188 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 RABAC1Q9UI14 185 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 PAM16Q9Y3D7 125 aa4.84□□□□□ -1.63
VPS53-213ENST00000572334 RYR1P21817 5038 aa4.84□□□□□ -1.64
VPS53-213ENST00000572334 IGHV4-4A0A075B6R2 117 aa4.83□□□□□ -1.64
VPS53-213ENST00000572334 PRSS47A8MTI9 375 aa4.83□□□□□ -1.64
VPS53-213ENST00000572334 H0Y8G0 127 aa4.83□□□□□ -1.64
VPS53-213ENST00000572334 CORTO00230 105 aa4.83□□□□□ -1.64
VPS53-213ENST00000572334 CCL25O15444 150 aa4.83□□□□□ -1.64
VPS53-213ENST00000572334 MIFP14174 115 aa4.83□□□□□ -1.64
VPS53-213ENST00000572334 OPRK1P41145 380 aa4.83□□□□□ -1.64
VPS53-213ENST00000572334 RPL11P62913 178 aaKnown RBP4.83□□□□□ -1.64
VPS53-213ENST00000572334 C12orf74Q32Q52 190 aa4.83□□□□□ -1.64
VPS53-213ENST00000572334 C2orf83Q53S99 150 aa4.83□□□□□ -1.64
VPS53-213ENST00000572334 MORN3Q6PF18 240 aaPredicted RBP4.83□□□□□ -1.64
VPS53-213ENST00000572334 SELENOHQ8IZQ5 122 aaKnown RBP4.83□□□□□ -1.64
VPS53-213ENST00000572334 TMEM252Q8N6L7 170 aa4.83□□□□□ -1.64
VPS53-213ENST00000572334 ZNF709Q8N972 641 aa4.83□□□□□ -1.64
VPS53-213ENST00000572334 OR10P1Q8NGE3 313 aa4.83□□□□□ -1.64
VPS53-213ENST00000572334 OR52E5Q8NH55 327 aa4.83□□□□□ -1.64
VPS53-213ENST00000572334 GPR146Q96CH1 333 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms