RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 CT45A10P0DMU9 189 aa7.54□□□□□ -1.2
MSH2-202ENST00000406134 LGALS9BQ3B8N2 356 aa7.54□□□□□ -1.2
MSH2-202ENST00000406134 LGALS9CQ6DKI2 356 aa7.54□□□□□ -1.2
MSH2-202ENST00000406134 PRSS3P2Q8NHM4 247 aa7.54□□□□□ -1.2
MSH2-202ENST00000406134 RBAKDNA6NC62 111 aa7.53□□□□□ -1.2
MSH2-202ENST00000406134 NOTCH2Q04721 2471 aa7.53□□□□□ -1.2
MSH2-202ENST00000406134 DPF1Q92782 380 aa7.53□□□□□ -1.2
MSH2-202ENST00000406134 C20orf173Q96LM9 149 aa7.53□□□□□ -1.2
MSH2-202ENST00000406134 BPESC1Q9GZL8 116 aa7.53□□□□□ -1.2
MSH2-202ENST00000406134 AGPAT4-IT1Q9H0P7 198 aa7.53□□□□□ -1.2
MSH2-202ENST00000406134 ZMAT4Q9H898 229 aa7.53□□□□□ -1.2
MSH2-202ENST00000406134 SNAI2O43623 268 aa7.53□□□□□ -1.2
MSH2-202ENST00000406134 ECSCRQ19T08 205 aa7.53□□□□□ -1.2
MSH2-202ENST00000406134 FA2HQ7L5A8 372 aa7.53□□□□□ -1.2
MSH2-202ENST00000406134 THYN1Q9P016 225 aa7.53□□□□□ -1.2
MSH2-202ENST00000406134 NBPF19A0A087WUL8 3843 aa7.53□□□□□ -1.2
MSH2-202ENST00000406134 CSN1S1P47710 185 aa7.53□□□□□ -1.2
MSH2-202ENST00000406134 HIST1H1AQ02539 215 aaPredicted RBP7.53□□□□□ -1.2
MSH2-202ENST00000406134 BOD1L2Q8IYS8 172 aa7.53□□□□□ -1.2
MSH2-202ENST00000406134 TIMM8BQ9Y5J9 83 aaPredicted RBP7.53□□□□□ -1.2
MSH2-202ENST00000406134 CACNG7P62955 275 aa7.52□□□□□ -1.21
MSH2-202ENST00000406134 TWIST1Q15672 202 aa7.52□□□□□ -1.21
MSH2-202ENST00000406134 ADAMTSL5Q6ZMM2 481 aa7.52□□□□□ -1.21
MSH2-202ENST00000406134 OR8A1Q8NGG7 326 aa7.52□□□□□ -1.21
MSH2-202ENST00000406134 DKK2Q9UBU2 259 aa7.52□□□□□ -1.21
MSH2-202ENST00000406134 IGF1P05019 195 aa7.52□□□□□ -1.21
MSH2-202ENST00000406134 PPIFP30405 207 aaKnown RBP7.52□□□□□ -1.21
MSH2-202ENST00000406134 CLEC19AQ6UXS0 136 aa7.52□□□□□ -1.21
MSH2-202ENST00000406134 NRACQ8N912 160 aa7.52□□□□□ -1.21
MSH2-202ENST00000406134 ITLN2Q8WWU7 325 aaPredicted RBP7.52□□□□□ -1.21
MSH2-202ENST00000406134 ACACBO00763 2458 aa7.52□□□□□ -1.21
MSH2-202ENST00000406134 IGHV3OR16-13A0A075B7E8 117 aa7.52□□□□□ -1.21
MSH2-202ENST00000406134 IGHV3-74A0A0B4J1X5 117 aa7.52□□□□□ -1.21
MSH2-202ENST00000406134 FBLL1A6NHQ2 334 aaKnown RBP7.52□□□□□ -1.21
MSH2-202ENST00000406134 HBDP02042 147 aa7.52□□□□□ -1.21
MSH2-202ENST00000406134 CRIP2P52943 208 aaPredicted RBP7.52□□□□□ -1.21
MSH2-202ENST00000406134 HHLA3Q9XRX5 114 aa7.52□□□□□ -1.21
MSH2-202ENST00000406134 MUC4Q99102 2169 aa7.51□□□□□ -1.21
MSH2-202ENST00000406134 TRAV8-6A0A0B4J262 113 aa7.51□□□□□ -1.21
MSH2-202ENST00000406134 SAMD13Q5VXD3 122 aa7.51□□□□□ -1.21
MSH2-202ENST00000406134 SOCS3O14543 225 aa7.51□□□□□ -1.21
MSH2-202ENST00000406134 TRBV12-3P01733 135 aa7.51□□□□□ -1.21
MSH2-202ENST00000406134 UQCRFS1P47985 274 aa7.51□□□□□ -1.21
MSH2-202ENST00000406134 C8orf86Q6ZUL3 223 aa7.51□□□□□ -1.21
MSH2-202ENST00000406134 WFDC3Q8IUB2 231 aa7.51□□□□□ -1.21
MSH2-202ENST00000406134 COL25A1Q9BXS0 654 aaPredicted RBP7.51□□□□□ -1.21
MSH2-202ENST00000406134 SELENOKQ9Y6D0 94 aa7.51□□□□□ -1.21
MSH2-202ENST00000406134 FLNCQ14315 2725 aa7.51□□□□□ -1.21
MSH2-202ENST00000406134 IGKV2D-26A0A0A0MRZ7 120 aa7.51□□□□□ -1.21
MSH2-202ENST00000406134 IGHV3-49A0A0A0MS15 119 aa7.51□□□□□ -1.21
MSH2-202ENST00000406134 RNF223E7ERA6 249 aa7.51□□□□□ -1.21
MSH2-202ENST00000406134 NPFFO15130 113 aa7.51□□□□□ -1.21
MSH2-202ENST00000406134 ZNF207O43670 478 aaKnown RBP7.51□□□□□ -1.21
MSH2-202ENST00000406134 RPS20P60866 119 aaKnown RBP7.51□□□□□ -1.21
MSH2-202ENST00000406134 TMEM219Q86XT9 240 aa7.51□□□□□ -1.21
MSH2-202ENST00000406134 JMJD8Q96S16 334 aa7.51□□□□□ -1.21
MSH2-202ENST00000406134 EVI2AP22794 236 aa7.5□□□□□ -1.21
MSH2-202ENST00000406134 EFNA4P52798 201 aa7.5□□□□□ -1.21
MSH2-202ENST00000406134 C9orf47Q6ZRZ4 202 aa7.5□□□□□ -1.21
MSH2-202ENST00000406134 PCP2Q8IVA1 136 aa7.5□□□□□ -1.21
MSH2-202ENST00000406134 FABP5P3A8MUU1 101 aa7.5□□□□□ -1.21
MSH2-202ENST00000406134 SMAD7O15105 426 aaKnown RBP7.5□□□□□ -1.21
MSH2-202ENST00000406134 SAP30O75446 220 aa7.5□□□□□ -1.21
MSH2-202ENST00000406134 CKS2P33552 79 aa7.5□□□□□ -1.21
MSH2-202ENST00000406134 ODF1Q14990 250 aa7.5□□□□□ -1.21
MSH2-202ENST00000406134 UNQ9165/PRO28630Q6UXU0 137 aa7.5□□□□□ -1.21
MSH2-202ENST00000406134 GLMPQ8WWB7 406 aa7.5□□□□□ -1.21
MSH2-202ENST00000406134 UBTD1Q9HAC8 227 aa7.5□□□□□ -1.21
MSH2-202ENST00000406134 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.5□□□□□ -1.211e-18■■■■■ 36.7
MSH2-202ENST00000406134 ZFYVE26Q68DK2 2539 aa7.5□□□□□ -1.21
MSH2-202ENST00000406134 A0A1B0GV72 72 aa7.5□□□□□ -1.21
MSH2-202ENST00000406134 TNFRSF6BO95407 300 aa7.5□□□□□ -1.21
MSH2-202ENST00000406134 TCTAP57738 103 aa7.5□□□□□ -1.21
MSH2-202ENST00000406134 LY6DQ14210 128 aa7.5□□□□□ -1.21
MSH2-202ENST00000406134 IFI27L1Q96BM0 104 aa7.5□□□□□ -1.21
MSH2-202ENST00000406134 MYO18BQ8IUG5 2567 aa7.49□□□□□ -1.21
MSH2-202ENST00000406134 ZANQ9Y493 2812 aa7.49□□□□□ -1.21
MSH2-202ENST00000406134 IGHV4-4A0A075B6R2 117 aa7.49□□□□□ -1.21
MSH2-202ENST00000406134 CD5LO43866 347 aa7.49□□□□□ -1.21
MSH2-202ENST00000406134 IGHV4-39P01824 125 aa7.49□□□□□ -1.21
MSH2-202ENST00000406134 UCNP55089 124 aa7.49□□□□□ -1.21
MSH2-202ENST00000406134 FAM19A4Q96LR4 140 aa7.49□□□□□ -1.21
MSH2-202ENST00000406134 ORM1P02763 201 aa7.49□□□□□ -1.21
MSH2-202ENST00000406134 LINC00527Q9UJ94 153 aa7.49□□□□□ -1.21
MSH2-202ENST00000406134 MXRA5Q9NR99 2828 aa7.49□□□□□ -1.21
MSH2-202ENST00000406134 TRAV26-2A0A0B4J265 109 aa7.48□□□□□ -1.21
MSH2-202ENST00000406134 DEFB1P60022 68 aa7.48□□□□□ -1.21
MSH2-202ENST00000406134 OR1N2Q8NGR9 330 aa7.48□□□□□ -1.21
MSH2-202ENST00000406134 MRPL53Q96EL3 112 aaKnown RBP7.48□□□□□ -1.21
MSH2-202ENST00000406134 SLC50A1Q9BRV3 221 aa7.48□□□□□ -1.21
MSH2-202ENST00000406134 TRBV7-1A0A0A6YYK4 115 aa7.48□□□□□ -1.21
MSH2-202ENST00000406134 C12orf54Q6X4T0 127 aa7.48□□□□□ -1.21
MSH2-202ENST00000406134 UFSP1Q6NVU6 142 aa7.48□□□□□ -1.21
MSH2-202ENST00000406134 Q6ZS46 218 aa7.48□□□□□ -1.21
MSH2-202ENST00000406134 GAGE12BA1L429 117 aa7.47□□□□□ -1.21
MSH2-202ENST00000406134 AMMECR1LQ6DCA0 310 aa7.47□□□□□ -1.21
MSH2-202ENST00000406134 TTTY13Q9BZ97 58 aa7.47□□□□□ -1.21
MSH2-202ENST00000406134 IGHV3OR16-10A0A075B7F0 116 aa7.47□□□□□ -1.21
MSH2-202ENST00000406134 EDN2P20800 178 aa7.47□□□□□ -1.21
MSH2-202ENST00000406134 TMEM97Q5BJF2 176 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 169.8 ms