RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 I3L521 148 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 K7EMT4 169 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 OR7C2O60412 319 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 YIF1AO95070 293 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 IGKV1-17P01599 117 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 IL4P05112 153 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 CTSGP08311 255 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 HIST1H1EP10412 219 aaKnown RBP3.9□□□□□ -1.79
LDLR-209ENST00000558528 BCL2P10415 239 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 ZP3P21754 424 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 GCHFRP30047 84 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 GALR1P47211 349 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 FHL2Q14192 279 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 USF2Q15853 346 aaPredicted RBP3.9□□□□□ -1.79
LDLR-209ENST00000558528 ZNF506Q5JVG8 444 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 SAMD13Q5VXD3 122 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 CLEC19AQ6UXS0 136 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 GPHB5Q86YW7 130 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 SLC7A5P1Q8MH63 180 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 PCNPQ8WW12 178 aaKnown RBP3.9□□□□□ -1.79
LDLR-209ENST00000558528 PAXXQ9BUH6 204 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 SEC11CQ9BY50 192 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 SLC25A39Q9BZJ4 359 aaPredicted RBP3.9□□□□□ -1.79
LDLR-209ENST00000558528 SLC35B3Q9H1N7 401 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 VSIRQ9H7M9 311 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 SLC25A22Q9H936 323 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 GNB4Q9HAV0 340 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 GNG13Q9P2W3 67 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 PRELID1Q9Y255 219 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 UFC1Q9Y3C8 167 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 YLPM1P49750 1951 aaKnown RBP3.9□□□□□ -1.79
LDLR-209ENST00000558528 TENM3Q9P273 2699 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 SACSQ9NZJ4 4579 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 RYR2Q92736 4967 aa3.89□□□□□ -1.79
LDLR-209ENST00000558528 CLPSL1A2RUU4 121 aa3.89□□□□□ -1.79
LDLR-209ENST00000558528 F8W036 122 aa3.89□□□□□ -1.79
LDLR-209ENST00000558528 NUDT3O95989 172 aa3.89□□□□□ -1.79
LDLR-209ENST00000558528 IGHV3-48P01763 117 aa3.89□□□□□ -1.79
LDLR-209ENST00000558528 PRSS1P07477 247 aa3.89□□□□□ -1.79
LDLR-209ENST00000558528 LGALS1P09382 135 aaKnown RBP3.89□□□□□ -1.79
LDLR-209ENST00000558528 NBEAP1P0C6P0 100 aa3.89□□□□□ -1.79
LDLR-209ENST00000558528 GATA2P23769 480 aaPredicted RBP3.89□□□□□ -1.79
LDLR-209ENST00000558528 XGP55808 180 aa3.89□□□□□ -1.79
LDLR-209ENST00000558528 PSG9Q00887 426 aa3.89□□□□□ -1.79
LDLR-209ENST00000558528 MEF2BQ02080 365 aaPredicted RBP3.89□□□□□ -1.79
LDLR-209ENST00000558528 PDE6HQ13956 83 aa3.89□□□□□ -1.79
LDLR-209ENST00000558528 ZNF726P1Q15940 193 aa3.89□□□□□ -1.79
LDLR-209ENST00000558528 RPEL1Q2QD12 228 aa3.89□□□□□ -1.79
LDLR-209ENST00000558528 SOHLH1Q5JUK2 328 aa3.89□□□□□ -1.79
LDLR-209ENST00000558528 MIR17HGQ75NE6 70 aa3.89□□□□□ -1.79
LDLR-209ENST00000558528 RXFP4Q8TDU9 374 aa3.89□□□□□ -1.79
LDLR-209ENST00000558528 NOL4LQ96MY1 436 aaPredicted RBP3.89□□□□□ -1.79
LDLR-209ENST00000558528 RCHY1Q96PM5 261 aa3.89□□□□□ -1.79
LDLR-209ENST00000558528 SHANK2-AS3Q9BTD1 123 aa3.89□□□□□ -1.79
LDLR-209ENST00000558528 MRPL36Q9P0J6 103 aaKnown RBP3.89□□□□□ -1.79
LDLR-209ENST00000558528 LINC00527Q9UJ94 153 aa3.89□□□□□ -1.79
LDLR-209ENST00000558528 PUS1Q9Y606 427 aaKnown RBP eCLIP3.89□□□□□ -1.79
LDLR-209ENST00000558528 DSCAML1Q8TD84 2053 aa3.89□□□□□ -1.79
LDLR-209ENST00000558528 DYNC2H1Q8NCM8 4307 aaKnown RBP3.88□□□□□ -1.79
LDLR-209ENST00000558528 HERC2O95714 4834 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 ZNF98A6NK75 572 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 C11orf94C9JXX5 98 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 H3BRN7 92 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 LGALS9O00182 355 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 ZNF253O75346 499 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 SNAPINO95295 136 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 CA1P00915 261 aaPredicted RBP3.88□□□□□ -1.79
LDLR-209ENST00000558528 SNRPCP09234 159 aaKnown RBP3.88□□□□□ -1.79
LDLR-209ENST00000558528 ARL14EPLP0DKL9 152 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 CRYBB3P26998 211 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 ID1P41134 155 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 CSN1S1P47710 185 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 FGF8P55075 233 aaPredicted RBP3.88□□□□□ -1.79
LDLR-209ENST00000558528 UBE2L3P68036 154 aaKnown RBP3.88□□□□□ -1.79
LDLR-209ENST00000558528 KIAA1644Q3SXP7 199 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 TOMM20LQ6UXN7 152 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 PATE2Q6UY27 113 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 C19orf35Q6ZS72 473 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 ZNF329Q86UD4 541 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 OR8I2Q8N0Y5 310 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 SVBPQ8N300 66 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 NRACQ8N912 160 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 CMTM2Q8TAZ6 248 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 MYOZ3Q8TDC0 251 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 C4orf3Q8WVX3 66 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 HIST1H2BAQ96A08 127 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 SLC50A1Q9BRV3 221 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 BIN3Q9NQY0 253 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 SIGLEC8Q9NYZ4 499 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 DOK5Q9P104 306 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 TSSC4Q9Y5U2 329 aaPredicted RBP3.88□□□□□ -1.79
LDLR-209ENST00000558528 RFNGQ9Y644 331 aa3.88□□□□□ -1.79
LDLR-209ENST00000558528 A0A1B0GV50 99 aa3.87□□□□□ -1.79
LDLR-209ENST00000558528 B4DEV8 164 aa3.87□□□□□ -1.79
LDLR-209ENST00000558528 LINC01619G3V211 115 aa3.87□□□□□ -1.79
LDLR-209ENST00000558528 BUB3O43684 328 aa3.87□□□□□ -1.79
LDLR-209ENST00000558528 IGHV3-23P01764 117 aa3.87□□□□□ -1.79
LDLR-209ENST00000558528 SRP19P09132 144 aaKnown RBP3.87□□□□□ -1.79
LDLR-209ENST00000558528 SFTA3P0C7M3 94 aa3.87□□□□□ -1.79
LDLR-209ENST00000558528 TAS2R60P59551 318 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 201.8 ms