RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 GCSAMLQ5JQS6 135 aa3.25□□□□□ -1.89
NUP54-206ENST00000508465 C10orf113Q5VZT2 155 aa3.25□□□□□ -1.89
NUP54-206ENST00000508465 MIC13Q5XKP0 118 aa3.25□□□□□ -1.89
NUP54-206ENST00000508465 EBLN2Q6P2I7 272 aa3.25□□□□□ -1.89
NUP54-206ENST00000508465 MORN3Q6PF18 240 aaPredicted RBP3.25□□□□□ -1.89
NUP54-206ENST00000508465 CEMP1Q6PRD7 247 aaPredicted RBP3.25□□□□□ -1.89
NUP54-206ENST00000508465 LINC00305Q7Z4B0 112 aa3.25□□□□□ -1.89
NUP54-206ENST00000508465 TMEM252Q8N6L7 170 aa3.25□□□□□ -1.89
NUP54-206ENST00000508465 Q8NAQ8 132 aa3.25□□□□□ -1.89
NUP54-206ENST00000508465 ZNF738Q8NE65 137 aa3.25□□□□□ -1.89
NUP54-206ENST00000508465 C11orf45Q8TAV5 145 aa3.25□□□□□ -1.89
NUP54-206ENST00000508465 THAP6Q8TBB0 222 aa3.25□□□□□ -1.89
NUP54-206ENST00000508465 LRRC20Q8TCA0 184 aa3.25□□□□□ -1.89
NUP54-206ENST00000508465 PHLDA1Q8WV24 401 aaPredicted RBP3.25□□□□□ -1.89
NUP54-206ENST00000508465 TMEM37Q8WXS4 190 aa3.25□□□□□ -1.89
NUP54-206ENST00000508465 MARVELD1Q9BSK0 173 aa3.25□□□□□ -1.89
NUP54-206ENST00000508465 SHANK2-AS3Q9BTD1 123 aa3.25□□□□□ -1.89
NUP54-206ENST00000508465 RNF126Q9BV68 326 aa3.25□□□□□ -1.89
NUP54-206ENST00000508465 SAV1Q9H4B6 383 aaPredicted RBP3.25□□□□□ -1.89
NUP54-206ENST00000508465 DNAJC4Q9NNZ3 241 aa3.25□□□□□ -1.89
NUP54-206ENST00000508465 RPRMQ9NS64 109 aa3.25□□□□□ -1.89
NUP54-206ENST00000508465 UQCC1Q9NVA1 299 aa3.25□□□□□ -1.89
NUP54-206ENST00000508465 RFNGQ9Y644 331 aa3.25□□□□□ -1.89
NUP54-206ENST00000508465 HLA-DRB4X5D2U9 266 aa3.25□□□□□ -1.89
NUP54-206ENST00000508465 DYNC2H1Q8NCM8 4307 aaKnown RBP3.25□□□□□ -1.89
NUP54-206ENST00000508465 TRAV12-2A0A075B6T6 113 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 UBE2L5PA0A1B0GUS4 154 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 FNDC10F2Z333 226 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 H3BQ15 152 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 H3BRN7 92 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 M0R2Z0 102 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 LY6G6CO95867 125 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 S100A11P31949 105 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 SULT1A1P50225 295 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 DEFA1P59665 94 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 DEFA3P59666 94 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 PLP1P60201 277 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 NUTF2P61970 127 aaKnown RBP3.24□□□□□ -1.89
NUP54-206ENST00000508465 RHOBP62745 196 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 BAXQ07812 192 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 GAGE2BQ13066 116 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 RAB31Q13636 194 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 CLINT1Q14677 625 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 OPCMLQ14982 345 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 PSG3Q16557 428 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 GAGE2EQ4V326 116 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 PRR27Q6MZM9 219 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 GAGE2AQ6NT46 116 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 FOXI2Q6ZQN5 318 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 ZNF546Q86UE3 836 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 ZNF709Q8N972 641 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 RNASE8Q8TDE3 154 aaKnown RBP3.24□□□□□ -1.89
NUP54-206ENST00000508465 GGACTQ9BVM4 153 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 SMIM3Q9BZL3 60 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 MFFQ9GZY8 342 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 ARV1Q9H2C2 271 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 LYRM2Q9NU23 88 aaPredicted RBP3.24□□□□□ -1.89
NUP54-206ENST00000508465 GAGE2DQ9UEU5 116 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 CELA1Q9UNI1 258 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 WDR83OSQ9Y284 106 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 ALG5Q9Y673 324 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 DNAH1Q9P2D7 4330 aa3.24□□□□□ -1.89
NUP54-206ENST00000508465 A0A1W2PPQ1 181 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 ZNF705GA8MUZ8 300 aaPredicted RBP3.23□□□□□ -1.89
NUP54-206ENST00000508465 ZNF705EA8MWA4 302 aaPredicted RBP3.23□□□□□ -1.89
NUP54-206ENST00000508465 IGLL5B9A064 214 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 E5RGE8 158 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 SLC17A3O00476 420 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 MRPS12O15235 138 aaKnown RBP3.23□□□□□ -1.89
NUP54-206ENST00000508465 PRAF2O60831 178 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 EIF3GO75821 320 aaKnown RBP eCLIP3.23□□□□□ -1.89
NUP54-206ENST00000508465 MIFP14174 115 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 HTN1P15515 57 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 RPL7P18124 248 aaKnown RBP3.23□□□□□ -1.89
NUP54-206ENST00000508465 CXCL3P19876 107 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 AZU1P20160 251 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 MEOX2P50222 304 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 CNN1P51911 297 aaKnown RBP3.23□□□□□ -1.89
NUP54-206ENST00000508465 HBG1P69891 147 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 HBG2P69892 147 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 HIST1H1AQ02539 215 aaPredicted RBP3.23□□□□□ -1.89
NUP54-206ENST00000508465 ERCC8Q13216 396 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 ATP6V1FQ16864 119 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 SPINK13Q1W4C9 94 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 C12orf74Q32Q52 190 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 SPATA31B1PQ5VZV4 182 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 AMTNQ6UX39 209 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 Q6ZRG5 221 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 STX12Q86Y82 276 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 C1orf158Q8N1D5 194 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 OR5C1Q8NGR4 320 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 BLNKQ8WV28 456 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 PPP1R1CQ8WVI7 109 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 RPUSD4Q96CM3 377 aaKnown RBP3.23□□□□□ -1.89
NUP54-206ENST00000508465 GPR82Q96P67 336 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 PARD6GQ9BYG4 376 aaPredicted RBP3.23□□□□□ -1.89
NUP54-206ENST00000508465 NMES1Q9C002 83 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 SLC25A31Q9H0C2 315 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 WFDC1Q9HC57 220 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 SLC39A9Q9NUM3 307 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 157.1 ms